HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-05 2FGX TITLE SOLUTION NMR STRUCTURE OF PROTEIN NE2328 FROM NITROSOMONAS EUROPAEA. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET NET3. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915; SOURCE 4 GENE: NE2328; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET P11 KEYWDS NET3, NESG, GFT-NMR, GLUTAREDOXIN-LIKE, PUTATIVE THIOREDOXIN, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,G.LIU,A.YEE,C.H.ARROWSMITH,T.SZYPERSKI,NORTHEAST STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (NESG) REVDAT 3 09-MAR-22 2FGX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2FGX 1 VERSN REVDAT 1 21-FEB-06 2FGX 0 JRNL AUTH A.ELETSKY,G.LIU,A.YEE,C.H.ARROWSMITH,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF NITROSOMONAS EUROPAEA HYPOTHETICAL JRNL TITL 2 PROTEIN NE2328: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET NET3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FGX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035864. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM MOPS, 450 MM NACL, 10 MM REMARK 210 DTT, ~10 UM ZN++, 0.01 % NAN3, 1 REMARK 210 MM BENZAMIDINE, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : GFT (4,3)D HNNCABCA; GFT (4,3)D REMARK 210 CABCA(CO)NHN; GFT (4,3)D REMARK 210 HABCAB(CO)NHN; GFT (4,3)D HCCH; REMARK 210 SIMULTANEOUS 13C-, 15N-RESOLVED REMARK 210 [1H, 1H] NOESY; AROMATIC 13C- REMARK 210 RESOLVED [1H, 1H] NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, CARA 1.5, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, EXPLICIT WATER REMARK 210 BATH REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: B-FACTOR COLUMN STORES ADDITIONAL COORDINATE DIGITS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 THR A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 81 O SER A 85 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 3 114.49 -171.58 REMARK 500 1 GLU A 16 -171.39 61.93 REMARK 500 1 PHE A 37 13.80 -145.46 REMARK 500 1 GLU A 38 179.86 57.64 REMARK 500 1 TYR A 54 -64.18 -108.65 REMARK 500 1 ASN A 55 -85.37 55.37 REMARK 500 1 VAL A 58 -122.71 -85.73 REMARK 500 1 PRO A 59 66.45 -10.33 REMARK 500 1 GLU A 66 -39.38 -157.44 REMARK 500 1 ASP A 67 60.15 69.96 REMARK 500 1 LEU A 70 -64.52 -105.23 REMARK 500 1 TYR A 73 134.05 -39.67 REMARK 500 1 PHE A 74 95.76 73.31 REMARK 500 1 SER A 77 -51.25 69.98 REMARK 500 2 ASN A 3 63.27 -104.44 REMARK 500 2 GLU A 16 17.93 57.68 REMARK 500 2 PHE A 37 16.66 -144.82 REMARK 500 2 GLU A 38 -175.32 58.58 REMARK 500 2 VAL A 58 -135.07 -80.37 REMARK 500 2 PRO A 59 68.21 -5.45 REMARK 500 2 ASN A 65 -49.00 79.02 REMARK 500 2 ASP A 67 82.18 63.02 REMARK 500 2 LEU A 70 -79.21 -94.76 REMARK 500 2 PHE A 74 103.35 70.78 REMARK 500 2 SER A 77 -60.40 71.27 REMARK 500 3 LYS A 9 113.66 72.03 REMARK 500 3 CYS A 18 95.76 70.69 REMARK 500 3 GLU A 38 175.30 59.92 REMARK 500 3 TYR A 54 -67.68 -108.42 REMARK 500 3 ASN A 55 -87.38 50.86 REMARK 500 3 VAL A 58 -127.10 -92.00 REMARK 500 3 PRO A 59 71.33 -12.96 REMARK 500 3 GLU A 66 -44.41 -152.56 REMARK 500 3 ASP A 67 81.41 70.89 REMARK 500 3 TYR A 73 -44.95 74.97 REMARK 500 4 GLN A 4 85.21 55.51 REMARK 500 4 GLU A 38 -178.64 58.67 REMARK 500 4 ASP A 45 98.10 -64.88 REMARK 500 4 ASP A 56 -59.42 -154.34 REMARK 500 4 VAL A 58 -107.06 -80.12 REMARK 500 4 PRO A 59 72.60 -9.62 REMARK 500 4 ASP A 67 74.07 62.23 REMARK 500 4 PHE A 74 98.59 70.67 REMARK 500 4 SER A 77 -54.63 72.91 REMARK 500 5 ARG A 15 110.01 -174.78 REMARK 500 5 GLU A 16 -87.66 65.06 REMARK 500 5 GLU A 38 -178.23 59.01 REMARK 500 5 VAL A 58 -108.09 -83.16 REMARK 500 5 PRO A 59 68.01 -15.01 REMARK 500 5 ASN A 65 -54.46 176.23 REMARK 500 REMARK 500 THIS ENTRY HAS 220 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 58 PRO A 59 1 -142.23 REMARK 500 VAL A 58 PRO A 59 2 -139.80 REMARK 500 VAL A 58 PRO A 59 3 -143.11 REMARK 500 VAL A 58 PRO A 59 4 -140.13 REMARK 500 VAL A 58 PRO A 59 5 -144.68 REMARK 500 VAL A 58 PRO A 59 6 -139.82 REMARK 500 VAL A 58 PRO A 59 7 -149.06 REMARK 500 VAL A 58 PRO A 59 8 -136.75 REMARK 500 VAL A 58 PRO A 59 9 -138.17 REMARK 500 VAL A 58 PRO A 59 10 -139.24 REMARK 500 VAL A 58 PRO A 59 11 -140.82 REMARK 500 VAL A 58 PRO A 59 12 -139.44 REMARK 500 VAL A 58 PRO A 59 13 -141.67 REMARK 500 VAL A 58 PRO A 59 14 -145.01 REMARK 500 VAL A 58 PRO A 59 16 -129.83 REMARK 500 VAL A 58 PRO A 59 17 -144.68 REMARK 500 VAL A 58 PRO A 59 19 -146.27 REMARK 500 VAL A 58 PRO A 59 20 -145.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NET3 RELATED DB: TARGETDB DBREF 2FGX A 1 85 GB 30181050 CAD86240 1 85 SEQADV 2FGX MET A -21 GB 30181050 CLONING ARTIFACT SEQADV 2FGX GLY A -20 GB 30181050 CLONING ARTIFACT SEQADV 2FGX THR A -19 GB 30181050 CLONING ARTIFACT SEQADV 2FGX SER A -18 GB 30181050 CLONING ARTIFACT SEQADV 2FGX HIS A -17 GB 30181050 EXPRESSION TAG SEQADV 2FGX HIS A -16 GB 30181050 EXPRESSION TAG SEQADV 2FGX HIS A -15 GB 30181050 EXPRESSION TAG SEQADV 2FGX HIS A -14 GB 30181050 EXPRESSION TAG SEQADV 2FGX HIS A -13 GB 30181050 EXPRESSION TAG SEQADV 2FGX HIS A -12 GB 30181050 EXPRESSION TAG SEQADV 2FGX SER A -11 GB 30181050 CLONING ARTIFACT SEQADV 2FGX SER A -10 GB 30181050 CLONING ARTIFACT SEQADV 2FGX GLY A -9 GB 30181050 CLONING ARTIFACT SEQADV 2FGX ARG A -8 GB 30181050 CLONING ARTIFACT SEQADV 2FGX GLU A -7 GB 30181050 CLONING ARTIFACT SEQADV 2FGX ASN A -6 GB 30181050 CLONING ARTIFACT SEQADV 2FGX LEU A -5 GB 30181050 CLONING ARTIFACT SEQADV 2FGX TYR A -4 GB 30181050 CLONING ARTIFACT SEQADV 2FGX PHE A -3 GB 30181050 CLONING ARTIFACT SEQADV 2FGX GLN A -2 GB 30181050 CLONING ARTIFACT SEQADV 2FGX GLY A -1 GB 30181050 CLONING ARTIFACT SEQADV 2FGX HIS A 0 GB 30181050 CLONING ARTIFACT SEQRES 1 A 107 MET GLY THR SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 107 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN ASN GLN SEQRES 3 A 107 VAL GLU PRO ARG LYS LEU VAL VAL TYR GLY ARG GLU GLY SEQRES 4 A 107 CYS HIS LEU CYS GLU GLU MET ILE ALA SER LEU ARG VAL SEQRES 5 A 107 LEU GLN LYS LYS SER TRP PHE GLU LEU GLU VAL ILE ASN SEQRES 6 A 107 ILE ASP GLY ASN GLU HIS LEU THR ARG LEU TYR ASN ASP SEQRES 7 A 107 ARG VAL PRO VAL LEU PHE ALA VAL ASN GLU ASP LYS GLU SEQRES 8 A 107 LEU CYS HIS TYR PHE LEU ASP SER ASP VAL ILE GLY ALA SEQRES 9 A 107 TYR LEU SER HELIX 1 1 CYS A 18 SER A 35 1 18 HELIX 2 2 ASN A 47 TYR A 54 1 8 HELIX 3 3 SER A 77 SER A 85 1 9 SHEET 1 A 4 GLU A 40 ASN A 43 0 SHEET 2 A 4 LEU A 10 GLY A 14 1 N VAL A 12 O GLU A 40 SHEET 3 A 4 VAL A 60 ALA A 63 -1 O PHE A 62 N VAL A 11 SHEET 4 A 4 LYS A 68 CYS A 71 -1 O LYS A 68 N ALA A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1