HEADER HYDROLASE 23-DEC-05 2FHF TITLE CRYSTAL STRUCTURE ANALYSIS OF KLEBSIELLA PNEUMONIAE PULLULANASE TITLE 2 COMPLEXED WITH MALTOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-DEXTRIN ENDO-1,6-ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PULLULAN 6-GLUCANOHYDROLASE; COMPND 5 EC: 3.2.1.41; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573 KEYWDS MULTIPLE DOMAIN, BETA-ALPHA-BARREL, ALPHA-AMYLASE-FAMILY, COMPLEX KEYWDS 2 WITH MALTOTETRAOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MIKAMI,H.IWAMOTO,Y.KATSUYA,H.-J.YOON,E.DEMIRKAN-SARIKAYA,D.MALLE REVDAT 7 30-OCT-24 2FHF 1 REMARK REVDAT 6 09-MAR-22 2FHF 1 COMPND SOURCE DBREF SEQADV REVDAT 5 10-NOV-21 2FHF 1 SEQADV HETSYN REVDAT 4 29-JUL-20 2FHF 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 18-OCT-17 2FHF 1 REMARK REVDAT 2 24-FEB-09 2FHF 1 VERSN REVDAT 1 13-JUN-06 2FHF 0 JRNL AUTH B.MIKAMI,H.IWAMOTO,D.MALLE,H.-J.YOON,E.DEMIRKAN-SARIKAYA, JRNL AUTH 2 Y.MEZAKI,Y.KATSUYA JRNL TITL CRYSTAL STRUCTURE OF PULLULANASE: EVIDENCE FOR PARALLEL JRNL TITL 2 BINDING OF OLIGOSACCHARIDES IN THE ACTIVE SITE JRNL REF J.MOL.BIOL. V. 359 690 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16650854 JRNL DOI 10.1016/J.JMB.2006.03.058 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 128887.900 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 115604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11574 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 15121 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1723 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8051 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 1197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.56000 REMARK 3 B22 (A**2) : 4.61000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.73000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.020 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.520 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.310 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 52.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : &_1_TOPOLOGY_INFILE_1 REMARK 3 TOPOLOGY FILE 2 : &_1_TOPOLOGY_INFILE_2 REMARK 3 TOPOLOGY FILE 3 : &_1_TOPOLOGY_INFILE_3 REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL24XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.836 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.9 REMARK 200 DATA REDUNDANCY : 2.760 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.34 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION DETAILS15-25% REMARK 280 POLYETHYLENEGLYCOL 6000 IN 0.2 M MAGNESIUM ACETATE AND 0.2 M REMARK 280 SODIUM ACETATE BUFFER. THE CRYSTAL WAS SOAKED WITH 300 MM REMARK 280 MALTOTETRAOSE FOR 30 MIN AT 20 DEG.C, FOLLOWED BY FLASH-FREEZING REMARK 280 IN A NITROGEN GAS STREAM AT 100 K WITHOUT ANY CRYO-PROTECTANT., REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.07950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.25450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.07950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.25450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2268 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 ASN A 18 REMARK 465 PRO A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 PRO A 28 REMARK 465 ASP A 29 REMARK 465 PRO A 30 REMARK 465 GLN A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 41 48.34 -79.91 REMARK 500 SER A 50 -153.41 -93.02 REMARK 500 ASN A 82 -144.71 -124.91 REMARK 500 ASP A 94 101.08 65.36 REMARK 500 ASP A 136 -81.43 -59.48 REMARK 500 SER A 137 145.29 -35.75 REMARK 500 ASP A 148 3.66 -69.47 REMARK 500 SER A 158 -4.71 74.31 REMARK 500 LEU A 176 -162.95 61.09 REMARK 500 ALA A 177 57.07 -161.81 REMARK 500 ALA A 312 66.94 -155.14 REMARK 500 PRO A 478 104.14 -19.91 REMARK 500 ASN A 539 72.72 -152.13 REMARK 500 ASN A 556 139.33 -175.11 REMARK 500 CYS A 643 -36.80 135.01 REMARK 500 CYS A 644 -118.27 -124.51 REMARK 500 TRP A 708 -162.70 -78.45 REMARK 500 ASN A 835 175.98 65.99 REMARK 500 THR A1028 -7.64 -142.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 148 OD1 REMARK 620 2 ASP A 148 OD2 50.3 REMARK 620 3 THR A 150 O 81.8 132.1 REMARK 620 4 ASP A 162 O 148.9 146.0 75.4 REMARK 620 5 ASP A 162 OD2 87.9 86.2 91.0 71.9 REMARK 620 6 HOH A2275 O 114.0 104.0 96.3 89.5 157.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 481 OD1 REMARK 620 2 LEU A 482 O 89.8 REMARK 620 3 GLU A 487 OE2 99.2 170.7 REMARK 620 4 GLU A 568 OE1 126.4 106.8 66.1 REMARK 620 5 GLU A 568 OE2 89.6 93.4 84.7 40.3 REMARK 620 6 HOH A1253 O 168.1 80.1 90.7 52.1 84.6 REMARK 620 7 HOH A1494 O 92.6 91.0 90.6 136.0 175.1 94.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 550 O REMARK 620 2 ASP A 553 OD1 82.5 REMARK 620 3 TYR A 555 O 170.8 88.4 REMARK 620 4 ASP A 893 OD2 92.4 141.6 93.7 REMARK 620 5 HOH A1271 O 94.1 72.4 81.6 70.0 REMARK 620 6 HOH A1492 O 101.8 141.9 86.3 76.5 143.4 REMARK 620 7 HOH A1493 O 86.1 72.0 92.6 146.0 144.0 70.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 994 OD2 REMARK 620 2 SER A1001 OG 91.8 REMARK 620 3 ASP A1003 O 95.8 94.5 REMARK 620 4 VAL A1006 O 85.2 176.3 83.6 REMARK 620 5 GLN A1070 OE1 168.9 98.5 87.5 84.6 REMARK 620 6 HOH A1521 O 91.7 93.7 168.7 88.7 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1246 O REMARK 620 2 HOH A1252 O 87.3 REMARK 620 3 HOH A1424 O 167.7 82.1 REMARK 620 4 HOH A1736 O 82.0 96.2 93.0 REMARK 620 5 HOH A1737 O 96.8 175.4 94.1 86.4 REMARK 620 6 HOH A1738 O 91.4 90.6 94.8 170.3 87.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FGZ RELATED DB: PDB REMARK 900 APO PULLULANASE REMARK 900 RELATED ID: 2FH6 RELATED DB: PDB REMARK 900 PULLULANASE COMPLEXED WITH GULCOSE REMARK 900 RELATED ID: 2FH8 RELATED DB: PDB REMARK 900 PULLULANASE COMPLEXED WITH ISOMALTOSE REMARK 900 RELATED ID: 2FHB RELATED DB: PDB REMARK 900 PULLULANASE COMPLEXED WITH MALTOSE REMARK 900 RELATED ID: 2FHC RELATED DB: PDB REMARK 900 PULLULANASE COMPLEXED WITH MALTOTRIOSE DBREF 2FHF A 1 1083 UNP W9BQ28 W9BQ28_KLEPN 20 1102 SEQADV 2FHF LEU A 680 UNP W9BQ28 GLY 699 CONFLICT SEQRES 1 A 1083 CYS ASP ASN SER SER SER SER SER THR SER GLY SER PRO SEQRES 2 A 1083 GLY SER PRO GLY ASN PRO GLY ASN PRO GLY THR PRO GLY SEQRES 3 A 1083 THR PRO ASP PRO GLN ASP VAL VAL VAL ARG LEU PRO ASP SEQRES 4 A 1083 VAL ALA VAL PRO GLY GLU ALA VAL GLN ALA SER ALA ARG SEQRES 5 A 1083 GLN ALA VAL ILE HIS LEU VAL ASP ILE ALA GLY ILE THR SEQRES 6 A 1083 SER SER THR PRO ALA ASP TYR ALA THR LYS ASN LEU TYR SEQRES 7 A 1083 LEU TRP ASN ASN GLU THR CYS ASP ALA LEU SER ALA PRO SEQRES 8 A 1083 VAL ALA ASP TRP ASN ASP VAL SER THR THR PRO THR GLY SEQRES 9 A 1083 SER ASP LYS TYR GLY PRO TYR TRP VAL ILE PRO LEU THR SEQRES 10 A 1083 LYS GLU SER GLY CYS ILE ASN VAL ILE VAL ARG ASP GLY SEQRES 11 A 1083 THR ASN LYS LEU ILE ASP SER ASP LEU ARG VAL SER PHE SEQRES 12 A 1083 SER ASP PHE THR ASP ARG THR VAL SER VAL ILE ALA GLY SEQRES 13 A 1083 ASN SER ALA VAL TYR ASP SER ARG ALA ASP ALA PHE ARG SEQRES 14 A 1083 ALA ALA PHE GLY VAL ALA LEU ALA ASP ALA HIS TRP VAL SEQRES 15 A 1083 ASP LYS THR THR LEU LEU TRP PRO GLY GLY GLU ASN LYS SEQRES 16 A 1083 PRO ILE VAL ARG LEU TYR TYR SER HIS SER SER LYS VAL SEQRES 17 A 1083 ALA ALA ASP SER ASN GLY GLU PHE SER ASP LYS TYR VAL SEQRES 18 A 1083 LYS LEU THR PRO THR THR VAL ASN GLN GLN VAL SER MET SEQRES 19 A 1083 ARG PHE PRO HIS LEU ALA SER TYR PRO ALA PHE LYS LEU SEQRES 20 A 1083 PRO ASP ASP VAL ASN VAL ASP GLU LEU LEU GLN GLY GLU SEQRES 21 A 1083 THR VAL ALA ILE ALA ALA GLU SER ASP GLY ILE LEU SER SEQRES 22 A 1083 SER ALA THR GLN VAL GLN THR ALA GLY VAL LEU ASP ASP SEQRES 23 A 1083 THR TYR ALA ALA ALA ALA GLU ALA LEU SER TYR GLY ALA SEQRES 24 A 1083 GLN LEU THR ASP SER GLY VAL THR PHE ARG VAL TRP ALA SEQRES 25 A 1083 PRO THR ALA GLN GLN VAL GLU LEU VAL ILE TYR SER ALA SEQRES 26 A 1083 ASP LYS LYS VAL ILE ALA SER HIS PRO MET THR ARG ASP SEQRES 27 A 1083 SER ALA SER GLY ALA TRP SER TRP GLN GLY GLY SER ASP SEQRES 28 A 1083 LEU LYS GLY ALA PHE TYR ARG TYR ALA MET THR VAL TYR SEQRES 29 A 1083 HIS PRO GLN SER ARG LYS VAL GLU GLN TYR GLU VAL THR SEQRES 30 A 1083 ASP PRO TYR ALA HIS SER LEU SER THR ASN SER GLU TYR SEQRES 31 A 1083 SER GLN VAL VAL ASP LEU ASN ASP SER ALA LEU LYS PRO SEQRES 32 A 1083 GLU GLY TRP ASP GLY LEU THR MET PRO HIS ALA GLN LYS SEQRES 33 A 1083 THR LYS ALA ASP LEU ALA LYS MET THR ILE HIS GLU SER SEQRES 34 A 1083 HIS ILE ARG ASP LEU SER ALA TRP ASP GLN THR VAL PRO SEQRES 35 A 1083 ALA GLU LEU ARG GLY LYS TYR LEU ALA LEU THR ALA GLN SEQRES 36 A 1083 GLU SER ASN MET VAL GLN HIS LEU LYS GLN LEU SER ALA SEQRES 37 A 1083 SER GLY VAL THR HIS ILE GLU LEU LEU PRO VAL PHE ASP SEQRES 38 A 1083 LEU ALA THR VAL ASN GLU PHE SER ASP LYS VAL ALA ASP SEQRES 39 A 1083 ILE GLN GLN PRO PHE SER ARG LEU CYS GLU VAL ASN SER SEQRES 40 A 1083 ALA VAL LYS SER SER GLU PHE ALA GLY TYR CYS ASP SER SEQRES 41 A 1083 GLY SER THR VAL GLU GLU VAL LEU THR GLN LEU LYS GLN SEQRES 42 A 1083 ASN ASP SER LYS ASP ASN PRO GLN VAL GLN ALA LEU ASN SEQRES 43 A 1083 THR LEU VAL ALA GLN THR ASP SER TYR ASN TRP GLY TYR SEQRES 44 A 1083 ASP PRO PHE HIS TYR THR VAL PRO GLU GLY SER TYR ALA SEQRES 45 A 1083 THR ASP PRO GLU GLY THR ALA ARG ILE LYS GLU PHE ARG SEQRES 46 A 1083 THR MET ILE GLN ALA ILE LYS GLN ASP LEU GLY MET ASN SEQRES 47 A 1083 VAL ILE MET ASP VAL VAL TYR ASN HIS THR ASN ALA ALA SEQRES 48 A 1083 GLY PRO THR ASP ARG THR SER VAL LEU ASP LYS ILE VAL SEQRES 49 A 1083 PRO TRP TYR TYR GLN ARG LEU ASN GLU THR THR GLY SER SEQRES 50 A 1083 VAL GLU SER ALA THR CYS CYS SER ASP SER ALA PRO GLU SEQRES 51 A 1083 HIS ARG MET PHE ALA LYS LEU ILE ALA ASP SER LEU ALA SEQRES 52 A 1083 VAL TRP THR THR ASP TYR LYS ILE ASP GLY PHE ARG PHE SEQRES 53 A 1083 ASP LEU MET LEU TYR HIS PRO LYS ALA GLN ILE LEU SER SEQRES 54 A 1083 ALA TRP GLU ARG ILE LYS ALA LEU ASN PRO ASP ILE TYR SEQRES 55 A 1083 PHE PHE GLY GLU GLY TRP ASP SER ASN GLN SER ASP ARG SEQRES 56 A 1083 PHE GLU ILE ALA SER GLN ILE ASN LEU LYS GLY THR GLY SEQRES 57 A 1083 ILE GLY THR PHE SER ASP ARG LEU ARG ASP ALA VAL ARG SEQRES 58 A 1083 GLY GLY GLY PRO PHE ASP SER GLY ASP ALA LEU ARG GLN SEQRES 59 A 1083 ASN GLN GLY VAL GLY SER GLY ALA GLY VAL LEU PRO ASN SEQRES 60 A 1083 GLU LEU THR THR LEU SER ASP ASP GLN ALA ARG HIS LEU SEQRES 61 A 1083 ALA ASP LEU THR ARG LEU GLY MET ALA GLY ASN LEU ALA SEQRES 62 A 1083 ASP PHE VAL LEU ILE ASP LYS ASP GLY ALA VAL LYS ARG SEQRES 63 A 1083 GLY SER GLU ILE ASP TYR ASN GLY ALA PRO GLY GLY TYR SEQRES 64 A 1083 ALA ALA ASP PRO THR GLU VAL VAL ASN TYR VAL SER LYS SEQRES 65 A 1083 HIS ASP ASN GLN THR LEU TRP ASP MET ILE SER TYR LYS SEQRES 66 A 1083 ALA ALA GLN GLU ALA ASP LEU ASP THR ARG VAL ARG MET SEQRES 67 A 1083 GLN ALA VAL SER LEU ALA THR VAL MET LEU GLY GLN GLY SEQRES 68 A 1083 ILE ALA PHE ASP GLN GLN GLY SER GLU LEU LEU ARG SER SEQRES 69 A 1083 LYS SER PHE THR ARG ASP SER TYR ASP SER GLY ASP TRP SEQRES 70 A 1083 PHE ASN ARG VAL ASP TYR SER LEU GLN ASP ASN ASN TYR SEQRES 71 A 1083 ASN VAL GLY MET PRO ARG SER SER ASP ASP GLY SER ASN SEQRES 72 A 1083 TYR ASP ILE ILE ALA ARG VAL LYS ASP ALA VAL ALA THR SEQRES 73 A 1083 PRO GLY GLU THR GLU LEU LYS GLN MET THR ALA PHE TYR SEQRES 74 A 1083 GLN GLU LEU THR ALA LEU ARG LYS SER SER PRO LEU PHE SEQRES 75 A 1083 THR LEU GLY ASP GLY ALA THR VAL MET LYS ARG VAL ASP SEQRES 76 A 1083 PHE ARG ASN THR GLY ALA ASP GLN GLN THR GLY LEU LEU SEQRES 77 A 1083 VAL MET THR ILE ASP ASP GLY MET GLN ALA GLY ALA SER SEQRES 78 A 1083 LEU ASP SER ARG VAL ASP GLY ILE VAL VAL ALA ILE ASN SEQRES 79 A 1083 ALA ALA PRO GLU SER ARG THR LEU GLN ASP PHE ALA GLY SEQRES 80 A 1083 THR SER LEU GLN LEU SER ALA ILE GLN GLN ALA ALA GLY SEQRES 81 A 1083 ASP ARG SER LEU ALA SER GLY VAL GLN VAL ALA ALA ASP SEQRES 82 A 1083 GLY SER VAL THR LEU PRO ALA TRP SER VAL ALA VAL LEU SEQRES 83 A 1083 GLU LEU PRO GLN GLY GLU SER GLN GLY ALA GLY LEU PRO SEQRES 84 A 1083 VAL SER SER LYS HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET GLC C 1 12 HET GLC C 2 11 HET GLC C 3 11 HET GLC C 4 11 HET GLC D 1 12 HET GLC D 2 11 HET CA A2401 1 HET CA A2402 1 HET CA A2403 1 HET CA A2404 1 HET CA A2405 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 10(C6 H12 O6) FORMUL 5 CA 5(CA 2+) FORMUL 10 HOH *1197(H2 O) HELIX 1 1 SER A 163 ALA A 170 1 8 HELIX 2 2 ALA A 171 GLY A 173 5 3 HELIX 3 3 PRO A 190 GLU A 193 5 4 HELIX 4 4 ASN A 229 PHE A 236 1 8 HELIX 5 5 PRO A 237 ALA A 240 5 4 HELIX 6 6 ASN A 252 LEU A 257 1 6 HELIX 7 7 THR A 280 ALA A 294 1 15 HELIX 8 8 GLY A 349 LYS A 353 5 5 HELIX 9 9 SER A 385 GLU A 389 5 5 HELIX 10 10 ASP A 398 LYS A 402 5 5 HELIX 11 11 GLY A 405 LEU A 409 5 5 HELIX 12 12 THR A 417 LYS A 423 1 7 HELIX 13 13 HIS A 430 ALA A 436 1 7 HELIX 14 14 PRO A 442 ARG A 446 5 5 HELIX 15 15 LYS A 448 ALA A 454 5 7 HELIX 16 16 SER A 457 GLY A 470 1 14 HELIX 17 17 PHE A 488 VAL A 492 5 5 HELIX 18 18 PRO A 498 ASN A 506 1 9 HELIX 19 19 ASN A 506 SER A 511 1 6 HELIX 20 20 PHE A 514 CYS A 518 5 5 HELIX 21 21 THR A 523 LYS A 532 1 10 HELIX 22 22 PRO A 540 ALA A 550 1 11 HELIX 23 23 THR A 578 ASP A 594 1 17 HELIX 24 24 VAL A 619 VAL A 624 1 6 HELIX 25 25 HIS A 651 LYS A 670 1 20 HELIX 26 26 LEU A 678 HIS A 682 5 5 HELIX 27 27 PRO A 683 ALA A 696 1 14 HELIX 28 28 SER A 733 GLY A 742 1 10 HELIX 29 29 ASP A 750 ASN A 755 1 6 HELIX 30 30 GLY A 757 GLY A 761 5 5 HELIX 31 31 SER A 773 ALA A 789 1 17 HELIX 32 32 ASP A 822 THR A 824 5 3 HELIX 33 33 THR A 837 ALA A 846 1 10 HELIX 34 34 ASP A 851 LEU A 868 1 18 HELIX 35 35 GLY A 878 LEU A 882 5 5 HELIX 36 36 SER A 894 ARG A 900 1 7 HELIX 37 37 ARG A 916 GLY A 921 1 6 HELIX 38 38 ASN A 923 LYS A 931 1 9 HELIX 39 39 GLY A 938 LYS A 957 1 20 HELIX 40 40 SER A 959 LEU A 964 5 6 HELIX 41 41 ASP A 966 ARG A 973 1 8 HELIX 42 42 SER A 1033 ALA A 1039 1 7 HELIX 43 43 GLY A 1040 SER A 1043 5 4 SHEET 1 A 4 GLY A 104 ASP A 106 0 SHEET 2 A 4 GLY A 109 PRO A 115 -1 O TYR A 111 N GLY A 104 SHEET 3 A 4 GLN A 53 LEU A 58 -1 N ALA A 54 O ILE A 114 SHEET 4 A 4 THR A 150 VAL A 153 1 O VAL A 151 N HIS A 57 SHEET 1 B 3 LYS A 75 TRP A 80 0 SHEET 2 B 3 CYS A 122 ASP A 129 -1 O ARG A 128 N ASN A 76 SHEET 3 B 3 ASN A 132 LYS A 133 -1 O ASN A 132 N ASP A 129 SHEET 1 C 3 LYS A 75 TRP A 80 0 SHEET 2 C 3 CYS A 122 ASP A 129 -1 O ARG A 128 N ASN A 76 SHEET 3 C 3 LEU A 139 SER A 142 -1 O LEU A 139 N VAL A 125 SHEET 1 D 8 LYS A 219 LYS A 222 0 SHEET 2 D 8 ILE A 197 SER A 203 -1 N LEU A 200 O VAL A 221 SHEET 3 D 8 GLU A 260 ALA A 266 -1 O ILE A 264 N ARG A 199 SHEET 4 D 8 LEU A 272 GLN A 279 -1 O SER A 273 N ALA A 265 SHEET 5 D 8 ALA A 179 ASP A 183 1 N ALA A 179 O GLN A 279 SHEET 6 D 8 THR A 186 LEU A 188 -1 O LEU A 188 N HIS A 180 SHEET 7 D 8 ALA A 244 LYS A 246 -1 O PHE A 245 N LEU A 187 SHEET 8 D 8 THR A 224 THR A 226 -1 N THR A 224 O LYS A 246 SHEET 1 E 4 GLY A 298 THR A 302 0 SHEET 2 E 4 GLY A 305 TRP A 311 -1 O GLY A 305 N THR A 302 SHEET 3 E 4 ALA A 343 GLY A 348 -1 O TRP A 346 N PHE A 308 SHEET 4 E 4 THR A 336 ARG A 337 -1 N THR A 336 O SER A 345 SHEET 1 F 4 VAL A 329 PRO A 334 0 SHEET 2 F 4 GLN A 317 TYR A 323 -1 N ILE A 322 O ILE A 330 SHEET 3 F 4 PHE A 356 HIS A 365 -1 O ALA A 360 N GLU A 319 SHEET 4 F 4 LYS A 370 VAL A 376 -1 O TYR A 374 N MET A 361 SHEET 1 G 4 VAL A 329 PRO A 334 0 SHEET 2 G 4 GLN A 317 TYR A 323 -1 N ILE A 322 O ILE A 330 SHEET 3 G 4 PHE A 356 HIS A 365 -1 O ALA A 360 N GLU A 319 SHEET 4 G 4 SER A 391 GLN A 392 -1 O SER A 391 N TYR A 357 SHEET 1 H 9 THR A 425 SER A 429 0 SHEET 2 H 9 HIS A 473 LEU A 476 1 O GLU A 475 N SER A 429 SHEET 3 H 9 ASN A 598 VAL A 603 1 O ILE A 600 N LEU A 476 SHEET 4 H 9 GLY A 673 PHE A 676 1 O ARG A 675 N MET A 601 SHEET 5 H 9 TYR A 702 GLY A 705 1 O PHE A 704 N PHE A 676 SHEET 6 H 9 GLY A 730 PHE A 732 1 O GLY A 730 N PHE A 703 SHEET 7 H 9 VAL A 826 ASN A 828 1 O VAL A 827 N THR A 731 SHEET 8 H 9 ILE A 872 GLN A 876 1 O ILE A 872 N ASN A 828 SHEET 9 H 9 THR A 425 SER A 429 1 N ILE A 426 O ALA A 873 SHEET 1 I 2 PHE A 480 LEU A 482 0 SHEET 2 I 2 PRO A 561 PRO A 567 -1 O PHE A 562 N ASP A 481 SHEET 1 J 2 HIS A 607 THR A 608 0 SHEET 2 J 2 SER A 645 ASP A 646 -1 O SER A 645 N THR A 608 SHEET 1 K 2 VAL A 796 ILE A 798 0 SHEET 2 K 2 VAL A 804 ARG A 806 -1 O LYS A 805 N LEU A 797 SHEET 1 L 2 ASP A 811 TYR A 812 0 SHEET 2 L 2 ALA A 815 PRO A 816 -1 O ALA A 815 N TYR A 812 SHEET 1 M 5 VAL A 974 ARG A 977 0 SHEET 2 M 5 LEU A 987 ASP A 993 -1 O THR A 991 N ASP A 975 SHEET 3 M 5 VAL A1006 ASN A1014 -1 O VAL A1011 N MET A 990 SHEET 4 M 5 SER A1062 PRO A1069 -1 O ALA A1064 N ALA A1012 SHEET 5 M 5 GLN A1031 LEU A1032 -1 N GLN A1031 O GLU A1067 SHEET 1 N 3 ARG A1020 LEU A1022 0 SHEET 2 N 3 VAL A1056 LEU A1058 -1 O VAL A1056 N LEU A1022 SHEET 3 N 3 GLN A1049 VAL A1050 -1 N GLN A1049 O THR A1057 SSBOND 1 CYS A 85 CYS A 122 1555 1555 2.03 SSBOND 2 CYS A 503 CYS A 518 1555 1555 2.04 SSBOND 3 CYS A 643 CYS A 644 1555 1555 2.05 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.40 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.40 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.40 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.40 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.40 LINK O4 GLC C 3 C1 GLC C 4 1555 1555 1.40 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.40 LINK OD1 ASP A 148 CA CA A2405 1555 1555 2.50 LINK OD2 ASP A 148 CA CA A2405 1555 1555 2.65 LINK O THR A 150 CA CA A2405 1555 1555 2.54 LINK O ASP A 162 CA CA A2405 1555 1555 2.31 LINK OD2 ASP A 162 CA CA A2405 1555 1555 2.39 LINK OD1 ASP A 481 CA CA A2404 1555 1555 2.15 LINK O LEU A 482 CA CA A2404 1555 1555 2.29 LINK OE2 GLU A 487 CA CA A2404 1555 1555 2.27 LINK O ALA A 550 CA CA A2401 1555 1555 2.39 LINK OD1 ASP A 553 CA CA A2401 1555 1555 2.44 LINK O TYR A 555 CA CA A2401 1555 1555 2.36 LINK OE1 GLU A 568 CA CA A2404 1555 1555 3.37 LINK OE2 GLU A 568 CA CA A2404 1555 1555 2.34 LINK OD2 ASP A 893 CA CA A2401 1555 1555 2.42 LINK OD2 ASP A 994 CA CA A2402 1555 1555 2.13 LINK OG SER A1001 CA CA A2402 1555 1555 2.15 LINK O ASP A1003 CA CA A2402 1555 1555 2.06 LINK O VAL A1006 CA CA A2402 1555 1555 2.24 LINK OE1 GLN A1070 CA CA A2402 1555 1555 2.04 LINK O HOH A1246 CA CA A2403 1555 1555 2.18 LINK O HOH A1252 CA CA A2403 1555 1555 2.17 LINK O HOH A1253 CA CA A2404 1555 1555 2.24 LINK O HOH A1271 CA CA A2401 1555 1555 2.58 LINK O HOH A1424 CA CA A2403 1555 1555 2.11 LINK O HOH A1492 CA CA A2401 1555 1555 2.50 LINK O HOH A1493 CA CA A2401 1555 1555 2.33 LINK O HOH A1494 CA CA A2404 1555 1555 2.28 LINK O HOH A1521 CA CA A2402 1555 1555 2.12 LINK O HOH A1736 CA CA A2403 1555 1555 2.22 LINK O HOH A1737 CA CA A2403 1555 1555 2.14 LINK O HOH A1738 CA CA A2403 1555 1555 2.14 LINK O HOH A2275 CA CA A2405 1555 1555 2.33 CRYST1 150.159 60.509 134.664 90.00 111.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006660 0.000000 0.002673 0.00000 SCALE2 0.000000 0.016526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008002 0.00000