HEADER HYDROLASE 26-DEC-05 2FHM TITLE SOLUTION STRUCTURE OF BACILLUS SUBTILIS ACYLPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ACYLPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYLPHOSPHATASE, ACYLPHOSPHATE PHOSPHOHYDROLASE; COMPND 5 EC: 3.6.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ACYLPHOSPHATASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.XIA,J.C.HU REVDAT 3 24-NOV-10 2FHM 1 JRNL REVDAT 2 24-FEB-09 2FHM 1 VERSN REVDAT 1 02-JAN-07 2FHM 0 JRNL AUTH J.C.HU,D.LI,X.-D.SU,C.W.JIN,B.XIA JRNL TITL SOLUTION STRUCTURE AND CONFORMATIONAL HETEROGENEITY OF JRNL TITL 2 ACYLPHOSPHATASE FROM BACILLUS SUBTILIS JRNL REF FEBS LETT. V. 584 2852 2010 JRNL REFN ISSN 0014-5793 JRNL PMID 20447399 JRNL DOI 10.1016/J.FEBSLET.2010.04.069 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FHM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035886. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM TRIS-HAC REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 0.5MM OF 13C/15N-LABELED YFLL IN REMARK 210 90% H2O/10% 2H2O BUFFER REMARK 210 CONTAINING 50MM TRIS HAC OF PH REMARK 210 7.0, 0.01% SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 15 -30.23 -150.89 REMARK 500 1 PRO A 65 -174.81 -66.23 REMARK 500 1 TYR A 90 36.88 -80.49 REMARK 500 2 SER A 67 176.56 129.48 REMARK 500 2 LEU A 80 175.76 60.82 REMARK 500 2 GLU A 81 -16.52 -141.80 REMARK 500 3 PHE A 66 3.65 -167.48 REMARK 500 3 SER A 79 88.83 -63.27 REMARK 500 3 TYR A 90 50.84 -142.82 REMARK 500 4 PHE A 17 -118.44 36.71 REMARK 500 4 PHE A 66 -31.89 -164.26 REMARK 500 5 PHE A 66 -56.09 179.51 REMARK 500 6 GLN A 13 -73.07 -131.21 REMARK 500 6 PHE A 66 -1.47 -57.94 REMARK 500 6 GLU A 81 -13.78 -141.14 REMARK 500 6 TYR A 90 10.22 -152.51 REMARK 500 7 PHE A 66 -46.04 -166.55 REMARK 500 7 LEU A 80 173.71 57.75 REMARK 500 7 GLU A 81 -13.95 -141.91 REMARK 500 7 TYR A 90 -31.49 -146.79 REMARK 500 8 ARG A 78 35.27 -87.63 REMARK 500 8 GLU A 81 -14.48 -142.78 REMARK 500 9 LEU A 80 179.70 58.68 REMARK 500 9 GLU A 81 -4.24 -153.61 REMARK 500 9 TYR A 90 12.06 -151.02 REMARK 500 10 LEU A 80 -177.26 59.31 REMARK 500 10 GLU A 81 -13.41 -149.45 REMARK 500 10 TYR A 90 36.95 -82.98 REMARK 500 11 PHE A 17 59.64 17.65 REMARK 500 11 ARG A 18 2.14 47.26 REMARK 500 11 SER A 67 175.96 62.55 REMARK 500 12 GLN A 13 35.41 -140.37 REMARK 500 12 VAL A 15 -71.16 55.91 REMARK 500 12 PHE A 17 -162.87 51.17 REMARK 500 12 LEU A 80 174.00 61.48 REMARK 500 12 GLU A 81 -16.44 -144.18 REMARK 500 13 PHE A 17 -147.27 44.58 REMARK 500 13 PRO A 65 -166.53 -79.84 REMARK 500 14 PHE A 17 51.88 21.09 REMARK 500 14 ARG A 18 -1.60 45.06 REMARK 500 15 PRO A 65 -172.29 -65.13 REMARK 500 15 LEU A 80 170.59 58.50 REMARK 500 16 PHE A 66 -48.86 -174.92 REMARK 500 16 LEU A 80 177.38 57.52 REMARK 500 16 HIS A 84 33.11 -140.39 REMARK 500 17 VAL A 15 -56.74 60.39 REMARK 500 17 SER A 67 170.31 62.71 REMARK 500 17 TYR A 90 36.21 -95.51 REMARK 500 18 PHE A 17 -127.65 35.62 REMARK 500 18 LEU A 80 175.16 63.95 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 4 ARG A 5 1 147.76 REMARK 500 SER A 67 LYS A 68 2 145.30 REMARK 500 PHE A 66 SER A 67 3 -120.47 REMARK 500 ARG A 41 VAL A 42 5 149.71 REMARK 500 MET A 1 LEU A 2 13 -149.20 REMARK 500 LYS A 35 ASN A 36 17 148.88 REMARK 500 TYR A 4 ARG A 5 20 149.77 REMARK 500 ARG A 85 PHE A 86 20 139.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 4 0.08 SIDE CHAIN REMARK 500 4 ARG A 28 0.10 SIDE CHAIN REMARK 500 6 TYR A 4 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2FHM A 1 91 UNP O35031 ACYP_BACSU 1 91 SEQRES 1 A 91 MET LEU GLN TYR ARG ILE ILE VAL ASP GLY ARG VAL GLN SEQRES 2 A 91 GLY VAL GLY PHE ARG TYR PHE VAL GLN MET GLU ALA ASP SEQRES 3 A 91 LYS ARG LYS LEU ALA GLY TRP VAL LYS ASN ARG ASP ASP SEQRES 4 A 91 GLY ARG VAL GLU ILE LEU ALA GLU GLY PRO GLU ASN ALA SEQRES 5 A 91 LEU GLN SER PHE VAL GLU ALA VAL LYS ASN GLY SER PRO SEQRES 6 A 91 PHE SER LYS VAL THR ASP ILE SER VAL THR GLU SER ARG SEQRES 7 A 91 SER LEU GLU GLY HIS HIS ARG PHE SER ILE VAL TYR SER HELIX 1 1 GLY A 16 ARG A 28 1 13 HELIX 2 2 PRO A 49 ASN A 62 1 14 SHEET 1 A 5 LYS A 68 SER A 77 0 SHEET 2 A 5 LEU A 2 ARG A 11 -1 N ASP A 9 O THR A 70 SHEET 3 A 5 VAL A 42 GLY A 48 -1 O ILE A 44 N ILE A 6 SHEET 4 A 5 ALA A 31 ASN A 36 -1 N TRP A 33 O LEU A 45 SHEET 5 A 5 PHE A 86 ILE A 88 1 O SER A 87 N GLY A 32 CISPEP 1 SER A 67 LYS A 68 3 -5.09 CISPEP 2 GLN A 13 GLY A 14 7 -0.50 CISPEP 3 ASP A 38 ASP A 39 9 5.66 CISPEP 4 PHE A 66 SER A 67 18 -7.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1