HEADER RNA BINDING PROTEIN 26-DEC-05 2FHO TITLE NMR SOLUTION STRUCTURE OF THE HUMAN SPLICEOSOMAL PROTEIN COMPLEX P14- TITLE 2 SF3B155 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPLICEOSOMAL PROTEIN SF3B155; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES IN DATABASE 379-424; COMPND 5 SYNONYM: SPLICEOSOMAL PROTEIN SF3B155, SPLICEOSOME ASSOCIATED PROTEIN COMPND 6 155, SAP 155, SF3B155, PRE-MRNA SPLICING FACTOR SF3B 155 KDA SUBUNIT; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SPLICEOSOMAL PROTEIN P14; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 12 SYNONYM: SPLICEOSOMAL PROTEIN P14, SF3B 14 KDA SUBUNIT; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SF3B155; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1-SF3B155(379-424)-HIS6-P14(8-93); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: P14; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1-SF3B155(379-424)-HIS6-P14(8-93) KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.KUWASAKO,N.DOHMAE,M.INOUE,M.SHIROUZU,P.GUNTERT,B.SERAPHIN,Y.MUTO, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 09-MAR-22 2FHO 1 REMARK SEQADV REVDAT 3 24-FEB-09 2FHO 1 VERSN REVDAT 2 02-JAN-07 2FHO 1 REMARK REVDAT 1 26-DEC-06 2FHO 0 JRNL AUTH K.KUWASAKO,N.DOHMAE,M.INOUE,M.SHIROUZU,P.GUNTERT,B.SERAPHIN, JRNL AUTH 2 Y.MUTO,S.YOKOYAMA JRNL TITL NMR SOLUTION STRUCTURE OF THE HUMAN SPLICEOSOMAL PROTEIN JRNL TITL 2 COMPLEX P14-SF3B155 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1, OPALP 1.4 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P (CYANA), KORADI, R. REMARK 3 (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FHO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035888. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM SODIUM PHOSPHATE BUFFER (PH REMARK 210 6.5), 100MM NACL, 1MM D-DTT; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8995, CYANA 2.1, OPALP REMARK 210 1.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 6 ARG B 46 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 6 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 17 ARG A 390 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 19 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 386 -165.58 -125.24 REMARK 500 1 CYS B 83 29.61 49.46 REMARK 500 2 GLN A 382 47.19 -145.85 REMARK 500 2 LEU A 383 102.52 -58.52 REMARK 500 2 TRP A 388 120.09 -170.70 REMARK 500 2 ASN A 396 72.01 -116.78 REMARK 500 3 GLN A 382 77.45 -116.49 REMARK 500 3 ILE A 392 176.72 179.90 REMARK 500 3 ARG A 397 154.70 118.87 REMARK 500 3 PRO A 398 91.14 -66.99 REMARK 500 3 TYR A 421 1.32 -65.27 REMARK 500 3 VAL A 422 73.11 64.96 REMARK 500 4 ARG A 390 108.87 -166.92 REMARK 500 4 LEU A 399 57.94 -145.53 REMARK 500 4 ALA A 419 92.98 -66.34 REMARK 500 5 GLU A 389 -158.69 -126.69 REMARK 500 6 THR A 379 80.11 23.97 REMARK 500 6 PRO A 418 152.94 -48.58 REMARK 500 6 CYS B 83 54.95 34.00 REMARK 500 7 THR A 379 47.29 -154.16 REMARK 500 7 GLN A 384 79.86 -67.60 REMARK 500 7 ALA A 385 88.21 -157.92 REMARK 500 7 LEU B 13 85.70 76.33 REMARK 500 8 ASN B 10 73.76 -117.52 REMARK 500 9 GLU A 381 -168.30 -79.88 REMARK 500 9 GLN A 382 -82.46 -129.40 REMARK 500 9 ARG A 390 -164.23 -160.96 REMARK 500 9 ASN A 396 -73.57 -101.10 REMARK 500 9 ARG A 397 151.86 65.46 REMARK 500 9 LEU A 399 -169.43 -128.72 REMARK 500 9 SER A 400 -78.71 -142.45 REMARK 500 9 GLU B 16 84.60 -68.01 REMARK 500 9 ILE B 38 -69.74 -94.06 REMARK 500 9 GLU B 65 -73.64 -86.80 REMARK 500 9 CYS B 83 52.18 39.73 REMARK 500 10 SER A 400 -149.28 -111.04 REMARK 500 10 PRO A 417 174.92 -53.17 REMARK 500 10 VAL A 422 63.88 60.53 REMARK 500 11 ASN A 396 12.10 56.78 REMARK 500 11 PRO A 417 171.84 -59.21 REMARK 500 11 ILE B 38 -72.79 -93.37 REMARK 500 11 PRO B 54 2.63 -64.02 REMARK 500 11 CYS B 83 38.84 38.77 REMARK 500 12 GLU A 381 -164.33 -128.39 REMARK 500 12 ARG A 390 77.85 -171.24 REMARK 500 12 GLU A 394 -73.81 -71.20 REMARK 500 12 ARG A 395 91.97 -171.08 REMARK 500 12 ARG B 12 26.99 -140.55 REMARK 500 12 CYS B 83 58.58 24.47 REMARK 500 13 GLU A 389 -154.97 -71.47 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG B 57 0.15 SIDE CHAIN REMARK 500 2 ARG A 390 0.08 SIDE CHAIN REMARK 500 2 ARG A 397 0.09 SIDE CHAIN REMARK 500 2 TYR B 92 0.07 SIDE CHAIN REMARK 500 3 ARG A 395 0.09 SIDE CHAIN REMARK 500 3 ARG B 46 0.09 SIDE CHAIN REMARK 500 3 TYR B 64 0.10 SIDE CHAIN REMARK 500 3 TYR B 86 0.07 SIDE CHAIN REMARK 500 6 ARG B 46 0.11 SIDE CHAIN REMARK 500 6 ARG B 85 0.08 SIDE CHAIN REMARK 500 9 TYR B 64 0.07 SIDE CHAIN REMARK 500 10 ARG B 12 0.12 SIDE CHAIN REMARK 500 10 TYR B 64 0.10 SIDE CHAIN REMARK 500 12 ARG A 390 0.09 SIDE CHAIN REMARK 500 13 TYR A 412 0.08 SIDE CHAIN REMARK 500 14 ARG A 397 0.13 SIDE CHAIN REMARK 500 14 TYR B 92 0.11 SIDE CHAIN REMARK 500 15 TYR B 22 0.07 SIDE CHAIN REMARK 500 15 TYR B 64 0.09 SIDE CHAIN REMARK 500 16 TYR A 421 0.07 SIDE CHAIN REMARK 500 17 ARG B 49 0.08 SIDE CHAIN REMARK 500 17 ARG B 57 0.12 SIDE CHAIN REMARK 500 19 ARG A 387 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2FHO A 379 424 UNP O75533 SF3B1_HUMAN 379 424 DBREF 2FHO B 8 93 UNP Q9Y3B4 PM14_HUMAN 8 93 SEQADV 2FHO GLY A 378 UNP O75533 CLONING ARTIFACT SEQADV 2FHO GLY B 7 UNP Q9Y3B4 CLONING ARTIFACT SEQRES 1 A 47 GLY THR PRO GLU GLN LEU GLN ALA TRP ARG TRP GLU ARG SEQRES 2 A 47 GLU ILE ASP GLU ARG ASN ARG PRO LEU SER ASP GLU GLU SEQRES 3 A 47 LEU ASP ALA MET PHE PRO GLU GLY TYR LYS VAL LEU PRO SEQRES 4 A 47 PRO PRO ALA GLY TYR VAL PRO ILE SEQRES 1 B 87 GLY ARG ALA ASN ILE ARG LEU PRO PRO GLU VAL ASN ARG SEQRES 2 B 87 ILE LEU TYR ILE ARG ASN LEU PRO TYR LYS ILE THR ALA SEQRES 3 B 87 GLU GLU MET TYR ASP ILE PHE GLY LYS TYR GLY PRO ILE SEQRES 4 B 87 ARG GLN ILE ARG VAL GLY ASN THR PRO GLU THR ARG GLY SEQRES 5 B 87 THR ALA TYR VAL VAL TYR GLU ASP ILE PHE ASP ALA LYS SEQRES 6 B 87 ASN ALA CYS ASP HIS LEU SER GLY PHE ASN VAL CYS ASN SEQRES 7 B 87 ARG TYR LEU VAL VAL LEU TYR TYR ASN HELIX 1 1 GLU A 402 PHE A 408 1 7 HELIX 2 2 THR B 31 GLY B 40 1 10 HELIX 3 3 ILE B 67 LEU B 77 1 11 SHEET 1 A 5 TYR A 412 VAL A 414 0 SHEET 2 A 5 ILE B 45 GLY B 51 -1 O VAL B 50 N LYS A 413 SHEET 3 A 5 THR B 59 TYR B 64 -1 O VAL B 63 N GLN B 47 SHEET 4 A 5 ILE B 20 ARG B 24 -1 N ILE B 23 O ALA B 60 SHEET 5 A 5 VAL B 88 TYR B 91 -1 O LEU B 90 N TYR B 22 SHEET 1 B 2 ASN B 81 VAL B 82 0 SHEET 2 B 2 ARG B 85 TYR B 86 -1 O ARG B 85 N VAL B 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1