HEADER HYDROLASE, METAL BINDING PROTEIN 27-DEC-05 2FHX TITLE PSEUDOMONAS AERUGINOSA SPM-1 METALLO-BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPM-1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SPM-1; COMPND 8 CHAIN: B; COMPND 9 EC: 3.5.2.6; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: 48-1997A; SOURCE 5 GENE: BLASPM-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PK18; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 13 ORGANISM_TAXID: 287; SOURCE 14 STRAIN: 48-1997A; SOURCE 15 GENE: BLASPM-1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PK18 KEYWDS METALLO-BETA-LACTAMASE, DINUCLEAR ZINC, ANTIBIOTIC RESISTANCE, KEYWDS 2 HYDROLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.A.MURPHY,L.E.CATTO,S.E.HALFORD,A.T.HADFIELD,W.MINOR,T.R.WALSH, AUTHOR 2 J.SPENCER REVDAT 8 20-NOV-24 2FHX 1 REMARK REVDAT 7 13-APR-22 2FHX 1 AUTHOR JRNL REMARK SEQADV REVDAT 7 2 1 LINK REVDAT 6 18-OCT-17 2FHX 1 REMARK REVDAT 5 12-NOV-14 2FHX 1 HET HETATM HETNAM HETSYN REVDAT 5 2 1 LINK MODRES SEQRES REVDAT 4 13-JUL-11 2FHX 1 VERSN REVDAT 3 24-FEB-09 2FHX 1 VERSN REVDAT 2 04-APR-06 2FHX 1 JRNL REVDAT 1 17-JAN-06 2FHX 0 JRNL AUTH T.A.MURPHY,L.E.CATTO,S.E.HALFORD,A.T.HADFIELD,W.MINOR, JRNL AUTH 2 T.R.WALSH,J.SPENCER JRNL TITL CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA SPM-1 PROVIDES JRNL TITL 2 INSIGHTS INTO VARIABLE ZINC AFFINITY OF JRNL TITL 3 METALLO-BETA-LACTAMASES. JRNL REF J.MOL.BIOL. V. 357 890 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16460758 JRNL DOI 10.1016/J.JMB.2006.01.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2146 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.513 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.780 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3960 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5358 ; 1.232 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 5.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;34.689 ;24.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 691 ;15.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2959 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1991 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2678 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 377 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.230 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2516 ; 0.887 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3967 ; 1.384 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1640 ; 1.900 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1388 ; 2.868 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4156 ; 1.244 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 361 ; 3.967 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3872 ; 2.219 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-03; 28-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-BM; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948; 1.28348, 1.28402, REMARK 200 1.2574 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; DOUBLE CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE; CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42802 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.05, RESOLVE 2.05 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS.CL, 2.0M AMMONIUM SULPHATE, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.46800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.64327 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.15367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 63.46800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 36.64327 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.15367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 63.46800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 36.64327 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.15367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.28653 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.30733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 73.28653 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.30733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 73.28653 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.30733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 34 REMARK 465 SER B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 251 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 134 O HOH A 562 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 315 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 61 54.67 -97.91 REMARK 500 SER A 84 -162.45 73.59 REMARK 500 ASN A 184 -14.07 85.27 REMARK 500 ASN A 184 -10.74 82.56 REMARK 500 ALA A 195 -98.32 -155.60 REMARK 500 LYS A 229 -42.21 -130.06 REMARK 500 PHE B 61 58.40 -97.81 REMARK 500 SER B 84 -164.79 69.96 REMARK 500 LYS B 106 63.41 33.71 REMARK 500 ALA B 195 -96.16 -155.91 REMARK 500 LYS B 229 -41.64 -130.68 REMARK 500 ASP B 255 39.09 -84.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 317 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 100.7 REMARK 620 3 HIS A 196 NE2 106.4 106.2 REMARK 620 4 HOH A 710 O 111.4 117.4 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 317 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 96.3 REMARK 620 3 HIS B 196 NE2 106.9 109.3 REMARK 620 4 HOH B 728 O 110.3 120.2 112.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS STRUCTURE IS NUMBERED ACCORDING TO THE STANDARD REMARK 999 NUMBERING SCHEME FOR CLASS B BETA-LACTAMASES REMARK 999 (GALLENI, M. ET AL. REMARK 999 (2001) "STANDARD REMARK 999 NUMBERING SCHEME FOR CLASS B BETA-LACTAMASES". ANTIMICROB. REMARK 999 AGENTS CHEMOTHER. MARCH, P. 660-663. REMARK 999 DISCONTINUITIES IN SEQUENCE ARISE FROM APPLICATION REMARK 999 OF THIS SCHEME AND ARE NOT A CONSEQUENCE OF REMARK 999 UNRESOLVED REGIONS OF THE PROTEIN. DBREF 2FHX A 34 316 GB 38260156 AAR15341 31 276 DBREF 2FHX B 34 316 GB 38260156 AAR15341 31 276 SEQADV 2FHX CSD A 221 GB 38260156 CYS 214 MODIFIED RESIDUE SEQADV 2FHX CSO B 221 GB 38260156 CYS 214 MODIFIED RESIDUE SEQRES 1 A 246 SER ASP HIS VAL ASP LEU PRO TYR ASN LEU THR ALA THR SEQRES 2 A 246 LYS ILE ASP SER ASP VAL PHE VAL VAL THR ASP ARG ASP SEQRES 3 A 246 PHE TYR SER SER ASN VAL LEU VAL ALA LYS MET LEU ASP SEQRES 4 A 246 GLY THR VAL VAL ILE VAL SER SER PRO PHE GLU ASN LEU SEQRES 5 A 246 GLY THR GLN THR LEU MET ASP TRP VAL ALA LYS THR MET SEQRES 6 A 246 LYS PRO LYS LYS VAL VAL ALA ILE ASN THR HIS PHE HIS SEQRES 7 A 246 LEU ASP GLY THR GLY GLY ASN GLU ILE TYR LYS LYS MET SEQRES 8 A 246 GLY ALA GLU THR TRP SER SER ASP LEU THR LYS GLN LEU SEQRES 9 A 246 ARG LEU GLU GLU ASN LYS LYS ASP ARG ILE LYS ALA ALA SEQRES 10 A 246 GLU PHE TYR LYS ASN GLU ASP LEU LYS ARG ARG ILE LEU SEQRES 11 A 246 SER SER HIS PRO VAL PRO ALA ASP ASN VAL PHE ASP LEU SEQRES 12 A 246 LYS GLN GLY LYS VAL PHE SER PHE SER ASN GLU LEU VAL SEQRES 13 A 246 GLU VAL SER PHE PRO GLY PRO ALA HIS SER PRO ASP ASN SEQRES 14 A 246 VAL VAL VAL TYR PHE PRO LYS LYS LYS LEU LEU PHE GLY SEQRES 15 A 246 GLY CSD MET ILE LYS PRO LYS GLU LEU GLY TYR LEU GLY SEQRES 16 A 246 ASP ALA ASN VAL LYS ALA TRP PRO ASP SER ALA ARG ARG SEQRES 17 A 246 LEU LYS LYS PHE ASP ALA LYS ILE VAL ILE PRO GLY HIS SEQRES 18 A 246 GLY GLU TRP GLY GLY PRO GLU MET VAL ASN LYS THR ILE SEQRES 19 A 246 LYS VAL ALA GLU LYS ALA VAL GLY GLU MET ARG LEU SEQRES 1 B 246 SER ASP HIS VAL ASP LEU PRO TYR ASN LEU THR ALA THR SEQRES 2 B 246 LYS ILE ASP SER ASP VAL PHE VAL VAL THR ASP ARG ASP SEQRES 3 B 246 PHE TYR SER SER ASN VAL LEU VAL ALA LYS MET LEU ASP SEQRES 4 B 246 GLY THR VAL VAL ILE VAL SER SER PRO PHE GLU ASN LEU SEQRES 5 B 246 GLY THR GLN THR LEU MET ASP TRP VAL ALA LYS THR MET SEQRES 6 B 246 LYS PRO LYS LYS VAL VAL ALA ILE ASN THR HIS PHE HIS SEQRES 7 B 246 LEU ASP GLY THR GLY GLY ASN GLU ILE TYR LYS LYS MET SEQRES 8 B 246 GLY ALA GLU THR TRP SER SER ASP LEU THR LYS GLN LEU SEQRES 9 B 246 ARG LEU GLU GLU ASN LYS LYS ASP ARG ILE LYS ALA ALA SEQRES 10 B 246 GLU PHE TYR LYS ASN GLU ASP LEU LYS ARG ARG ILE LEU SEQRES 11 B 246 SER SER HIS PRO VAL PRO ALA ASP ASN VAL PHE ASP LEU SEQRES 12 B 246 LYS GLN GLY LYS VAL PHE SER PHE SER ASN GLU LEU VAL SEQRES 13 B 246 GLU VAL SER PHE PRO GLY PRO ALA HIS SER PRO ASP ASN SEQRES 14 B 246 VAL VAL VAL TYR PHE PRO LYS LYS LYS LEU LEU PHE GLY SEQRES 15 B 246 GLY CSO MET ILE LYS PRO LYS GLU LEU GLY TYR LEU GLY SEQRES 16 B 246 ASP ALA ASN VAL LYS ALA TRP PRO ASP SER ALA ARG ARG SEQRES 17 B 246 LEU LYS LYS PHE ASP ALA LYS ILE VAL ILE PRO GLY HIS SEQRES 18 B 246 GLY GLU TRP GLY GLY PRO GLU MET VAL ASN LYS THR ILE SEQRES 19 B 246 LYS VAL ALA GLU LYS ALA VAL GLY GLU MET ARG LEU MODRES 2FHX CSD A 221 CYS 3-SULFINOALANINE MODRES 2FHX CSO B 221 CYS S-HYDROXYCYSTEINE HET CSD A 221 8 HET CSO B 221 7 HET ZN A 317 1 HET AZI A 401 3 HET AZI A 403 3 HET EDO A 501 4 HET EDO A 502 4 HET ZN B 317 1 HET AZI B 402 3 HET CL B 601 1 HETNAM CSD 3-SULFINOALANINE HETNAM CSO S-HYDROXYCYSTEINE HETNAM ZN ZINC ION HETNAM AZI AZIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 ZN 2(ZN 2+) FORMUL 4 AZI 3(N3 1-) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 10 CL CL 1- FORMUL 11 HOH *358(H2 O) HELIX 1 1 GLU A 88 LYS A 106 1 17 HELIX 2 2 HIS A 118 GLY A 123 1 6 HELIX 3 3 GLY A 124 MET A 131 1 8 HELIX 4 4 ASP A 139 TYR A 151 1 22 HELIX 5 5 ASN A 153 SER A 163 1 11 HELIX 6 6 CSD A 221 ILE A 223 5 3 HELIX 7 7 ALA A 241 LEU A 249 1 9 HELIX 8 8 LYS A 250 PHE A 252 5 3 HELIX 9 9 PRO A 297 ARG A 315 1 19 HELIX 10 10 GLU B 88 LYS B 106 1 17 HELIX 11 11 HIS B 118 GLY B 123 1 6 HELIX 12 12 GLY B 124 MET B 131 1 8 HELIX 13 13 ASP B 139 TYR B 151 1 22 HELIX 14 14 ASN B 153 HIS B 164 1 12 HELIX 15 15 CSO B 221 ILE B 223 5 3 HELIX 16 16 ALA B 241 ARG B 248 1 8 HELIX 17 17 LEU B 249 PHE B 252 5 4 HELIX 18 18 PRO B 297 ARG B 315 1 19 SHEET 1 A 8 HIS A 36 ASP A 38 0 SHEET 2 A 8 LEU A 43 ASP A 49 -1 O ALA A 45 N VAL A 37 SHEET 3 A 8 VAL A 52 ASP A 57 -1 O VAL A 52 N ILE A 48 SHEET 4 A 8 SER A 69 LYS A 75 -1 O VAL A 71 N VAL A 55 SHEET 5 A 8 THR A 79A VAL A 83 -1 O VAL A 81 N ALA A 74 SHEET 6 A 8 LYS A 109 ILE A 113 1 O ILE A 113 N ILE A 82 SHEET 7 A 8 GLU A 134 SER A 138 1 O GLU A 134 N ALA A 112 SHEET 8 A 8 ASN A 170 PHE A 172 1 O ASN A 170 N THR A 135 SHEET 1 B 5 LYS A 178 PHE A 182 0 SHEET 2 B 5 GLU A 185 SER A 190 -1 O VAL A 189 N LYS A 178 SHEET 3 B 5 VAL A 202 PHE A 205 -1 O TYR A 204 N GLU A 188 SHEET 4 B 5 LEU A 216 GLY A 220 -1 O PHE A 218 N VAL A 203 SHEET 5 B 5 ILE A 258 PRO A 261 1 O ILE A 260 N LEU A 217 SHEET 1 C 8 HIS B 36 ASP B 38 0 SHEET 2 C 8 LEU B 43 ASP B 49 -1 O ALA B 45 N VAL B 37 SHEET 3 C 8 VAL B 52 ASP B 57 -1 O VAL B 52 N ILE B 48 SHEET 4 C 8 SER B 69 LYS B 75 -1 O VAL B 71 N VAL B 55 SHEET 5 C 8 VAL B 80 VAL B 83 -1 O VAL B 81 N ALA B 74 SHEET 6 C 8 VAL B 110 ILE B 113 1 O ILE B 113 N ILE B 82 SHEET 7 C 8 GLU B 134 SER B 138 1 O GLU B 134 N VAL B 110 SHEET 8 C 8 ASN B 170 PHE B 172 1 O ASN B 170 N SER B 137 SHEET 1 D 5 LYS B 178 PHE B 182 0 SHEET 2 D 5 GLU B 185 SER B 190 -1 O VAL B 187 N PHE B 180 SHEET 3 D 5 VAL B 202 PHE B 205 -1 O TYR B 204 N GLU B 188 SHEET 4 D 5 LEU B 216 GLY B 220 -1 O PHE B 218 N VAL B 203 SHEET 5 D 5 ILE B 258 PRO B 261 1 O ILE B 260 N LEU B 217 LINK C GLY A 220 N CSD A 221 1555 1555 1.33 LINK C CSD A 221 N MET A 222 1555 1555 1.33 LINK C GLY B 220 N CSO B 221 1555 1555 1.33 LINK C CSO B 221 N MET B 222 1555 1555 1.33 LINK NE2 HIS A 116 ZN ZN A 317 1555 1555 2.16 LINK ND1 HIS A 118 ZN ZN A 317 1555 1555 2.07 LINK NE2 HIS A 196 ZN ZN A 317 1555 1555 2.03 LINK ZN ZN A 317 O HOH A 710 1555 1555 1.68 LINK NE2 HIS B 116 ZN ZN B 317 1555 1555 2.20 LINK ND1 HIS B 118 ZN ZN B 317 1555 1555 2.13 LINK NE2 HIS B 196 ZN ZN B 317 1555 1555 2.07 LINK ZN ZN B 317 O HOH B 728 1555 1555 1.81 SITE 1 AC1 6 HIS A 116 HIS A 118 HIS A 196 CSD A 221 SITE 2 AC1 6 HOH A 594 HOH A 710 SITE 1 AC2 5 HIS B 116 HIS B 118 HIS B 196 HOH B 664 SITE 2 AC2 5 HOH B 728 SITE 1 AC3 6 HIS A 196 CSD A 221 LYS A 224 GLY A 232 SITE 2 AC3 6 TYR A 233 TYR B 67 SITE 1 AC4 6 TYR A 67 HIS B 196 CSO B 221 LYS B 224 SITE 2 AC4 6 TYR B 233 HIS B 263 SITE 1 AC5 7 SER A 84 THR A 115 HIS A 116 GLY A 220 SITE 2 AC5 7 CSD A 221 HOH A 624 HOH A 704 SITE 1 AC6 3 ARG B 150D HIS B 164 HOH B 653 SITE 1 AC7 6 LEU A 249 LYS A 250 PHE A 252 ALA A 256 SITE 2 AC7 6 PRO A 297 VAL A 300 SITE 1 AC8 5 GLU A 265 TRP A 266 GLU A 313 ARG A 315 SITE 2 AC8 5 HOH A 722 CRYST1 126.936 126.936 90.461 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007880 0.004550 0.000000 0.00000 SCALE2 0.000000 0.009100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011050 0.00000