data_2FIJ # _entry.id 2FIJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FIJ pdb_00002fij 10.2210/pdb2fij/pdb NDB AD0060 ? ? RCSB RCSB035918 ? ? WWPDB D_1000035918 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FIH . unspecified PDB 2FII . unspecified PDB 2FIL . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FIJ _pdbx_database_status.recvd_initial_deposition_date 2005-12-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Li, F.' 2 # _citation.id primary _citation.title ;2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 4141 _citation.page_last 4152 _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16566588 _citation.pdbx_database_id_DOI 10.1021/bi052322r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, F.' 1 ? primary 'Sarkhel, S.' 2 ? primary 'Wilds, C.J.' 3 ? primary 'Wawrzak, Z.' 4 ? primary 'Prakash, T.P.' 5 ? primary 'Manoharan, M.' 6 ? primary 'Egli, M.' 7 ? # _cell.entry_id 2FIJ _cell.length_a 32.277 _cell.length_b 32.469 _cell.length_c 66.749 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FIJ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*(A2M)P*(UAR)P*AP*CP*GP*C)-3'" 3077.004 2 ? ;2'-Methylation at A5 and incorperated arabino-U at position 6 ; ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 3 ? ? ? ? 4 water nat water 18.015 128 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(A2M)(UAR)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTAUACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 A2M n 1 6 UAR n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2FIJ _struct_ref.pdbx_db_accession 2FIJ _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2FIJ A 1 ? 10 ? 2FIJ 1 ? 10 ? 1 10 2 1 2FIJ B 1 ? 10 ? 2FIJ 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 UAR 'RNA linking' n ;URACIL ARABINOSE-5'-PHOSPHATE ; ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2FIJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 55.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;Final droplet composition: 1 mM oligonucleotide, 10% MPD, 20 mM sodium cacodylate, pH 5.5, 10 mM cobalt hexamine, 20 mM LiCl and 10 mM MgCl2., VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'cobalt hexamine' ? ? ? 1 4 1 LiCl ? ? ? 1 5 1 MgCl2 ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MPD ? ? ? 1 8 2 'sodium cacodylate' ? ? ? 1 9 2 'cobalt hexamine' ? ? ? 1 10 2 LiCl ? ? ? 1 11 2 MgCl2 ? ? ? 1 12 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-06-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.60914 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.60914 # _reflns.entry_id 2FIJ _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 33.37 _reflns.d_resolution_high 1.19 _reflns.number_obs 21724 _reflns.number_all 21724 _reflns.percent_possible_obs 93.7 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.19 _reflns_shell.d_res_low 1.27 _reflns_shell.percent_possible_all 91.0 _reflns_shell.Rmerge_I_obs 0.29 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4020 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2FIJ _refine.ls_number_reflns_obs 21724 _refine.ls_number_reflns_all 21724 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.37 _refine.ls_d_res_high 1.19 _refine.ls_percent_reflns_obs 93.69 _refine.ls_R_factor_obs 0.15856 _refine.ls_R_factor_all 0.15856 _refine.ls_R_factor_R_work 0.15736 _refine.ls_R_factor_R_free 0.16922 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 2208 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.974 _refine.B_iso_mean 12.888 _refine.aniso_B[1][1] 0.14 _refine.aniso_B[2][2] 0.18 _refine.aniso_B[3][3] -0.32 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'NDB entry AD0007/PDB entry 1DPL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.039 _refine.pdbx_overall_ESU_R_Free 0.036 _refine.overall_SU_ML 0.022 _refine.overall_SU_B 1.083 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 408 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 558 _refine_hist.d_res_high 1.19 _refine_hist.d_res_low 33.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 468 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 201 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.260 3.000 ? 721 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.145 3.000 ? 494 'X-RAY DIFFRACTION' ? r_chiral_restr 0.062 0.200 ? 80 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.015 0.020 ? 206 'X-RAY DIFFRACTION' ? r_nbd_refined 0.537 0.200 ? 86 'X-RAY DIFFRACTION' ? r_nbd_other 0.246 0.200 ? 244 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.261 0.200 ? 155 'X-RAY DIFFRACTION' ? r_nbtor_other 0.088 0.200 ? 96 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.138 0.200 ? 127 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.171 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.224 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.103 0.200 ? 24 'X-RAY DIFFRACTION' ? r_scbond_it 2.088 3.000 ? 673 'X-RAY DIFFRACTION' ? r_scangle_it 2.576 4.500 ? 712 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.190 _refine_ls_shell.d_res_low 1.221 _refine_ls_shell.number_reflns_R_work 1334 _refine_ls_shell.R_factor_R_work 0.241 _refine_ls_shell.percent_reflns_obs 90.42 _refine_ls_shell.R_factor_R_free 0.232 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 167 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2FIJ _struct.title ;Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FIJ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Arabinonucleic Acid, Sugar Modifications, A-form DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a duplex and corresponds to the crystallographic asymmetric unit, hence no symmetry operators are needed' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 4 "O3'" ? ? ? 1_555 A A2M 5 P ? ? A DT 4 A A2M 5 1_555 ? ? ? ? ? ? ? 1.640 ? ? covale2 covale one ? A A2M 5 "O3'" ? ? ? 1_555 A UAR 6 P ? ? A A2M 5 A UAR 6 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? A UAR 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A UAR 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.810 ? ? covale4 covale both ? B DT 4 "O3'" ? ? ? 1_555 B A2M 5 P ? ? B DT 14 B A2M 15 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale5 covale one ? B A2M 5 "O3'" ? ? ? 1_555 B UAR 6 P ? ? B A2M 15 B UAR 16 1_555 ? ? ? ? ? ? ? 1.628 ? ? covale6 covale both ? B UAR 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B UAR 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.836 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A2M 5 N1 ? ? ? 1_555 B UAR 6 N3 ? ? A A2M 5 B UAR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A2M 5 N6 ? ? ? 1_555 B UAR 6 O4 ? ? A A2M 5 B UAR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A UAR 6 N3 ? ? ? 1_555 B A2M 5 N1 ? ? A UAR 6 B A2M 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A UAR 6 O4 ? ? ? 1_555 B A2M 5 N6 ? ? A UAR 6 B A2M 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 101 ? 4 'BINDING SITE FOR RESIDUE CL A 101' AC2 Software A NCO 2211 ? 12 'BINDING SITE FOR RESIDUE NCO A 2211' AC3 Software B NCO 2212 ? 12 'BINDING SITE FOR RESIDUE NCO B 2212' AC4 Software A NCO 2213 ? 13 'BINDING SITE FOR RESIDUE NCO A 2213' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 A2M A 5 ? A2M A 5 . ? 1_555 ? 2 AC1 4 NCO E . ? NCO A 2213 . ? 1_555 ? 3 AC1 4 A2M B 5 ? A2M B 15 . ? 1_555 ? 4 AC1 4 NCO F . ? NCO B 2212 . ? 1_555 ? 5 AC2 12 DC A 2 ? DC A 2 . ? 1_555 ? 6 AC2 12 DG A 3 ? DG A 3 . ? 1_555 ? 7 AC2 12 DC A 8 ? DC A 8 . ? 4_566 ? 8 AC2 12 DG A 9 ? DG A 9 . ? 4_566 ? 9 AC2 12 HOH G . ? HOH A 123 . ? 1_555 ? 10 AC2 12 HOH G . ? HOH A 183 . ? 1_555 ? 11 AC2 12 HOH G . ? HOH A 186 . ? 1_555 ? 12 AC2 12 DC B 2 ? DC B 12 . ? 1_555 ? 13 AC2 12 DG B 3 ? DG B 13 . ? 1_555 ? 14 AC2 12 DC B 8 ? DC B 18 . ? 3_745 ? 15 AC2 12 DG B 9 ? DG B 19 . ? 3_745 ? 16 AC2 12 HOH H . ? HOH B 170 . ? 1_555 ? 17 AC3 12 DT A 4 ? DT A 4 . ? 1_555 ? 18 AC3 12 UAR A 6 ? UAR A 6 . ? 1_555 ? 19 AC3 12 DA A 7 ? DA A 7 . ? 1_555 ? 20 AC3 12 CL C . ? CL A 101 . ? 1_555 ? 21 AC3 12 HOH G . ? HOH A 106 . ? 1_555 ? 22 AC3 12 HOH G . ? HOH A 160 . ? 1_555 ? 23 AC3 12 HOH G . ? HOH A 218 . ? 1_555 ? 24 AC3 12 DC B 2 ? DC B 12 . ? 1_555 ? 25 AC3 12 DG B 3 ? DG B 13 . ? 1_555 ? 26 AC3 12 DT B 4 ? DT B 14 . ? 1_555 ? 27 AC3 12 HOH H . ? HOH B 104 . ? 1_555 ? 28 AC3 12 HOH H . ? HOH B 158 . ? 1_555 ? 29 AC4 13 DC A 2 ? DC A 2 . ? 1_555 ? 30 AC4 13 DG A 3 ? DG A 3 . ? 1_555 ? 31 AC4 13 DT A 4 ? DT A 4 . ? 1_555 ? 32 AC4 13 CL C . ? CL A 101 . ? 1_555 ? 33 AC4 13 HOH G . ? HOH A 102 . ? 1_555 ? 34 AC4 13 HOH G . ? HOH A 110 . ? 1_555 ? 35 AC4 13 HOH G . ? HOH A 140 . ? 1_555 ? 36 AC4 13 DT B 4 ? DT B 14 . ? 1_555 ? 37 AC4 13 UAR B 6 ? UAR B 16 . ? 1_555 ? 38 AC4 13 DA B 7 ? DA B 17 . ? 1_555 ? 39 AC4 13 HOH H . ? HOH B 111 . ? 1_555 ? 40 AC4 13 HOH H . ? HOH B 174 . ? 1_555 ? 41 AC4 13 HOH H . ? HOH B 228 . ? 1_555 ? # _database_PDB_matrix.entry_id 2FIJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FIJ _atom_sites.fract_transf_matrix[1][1] 0.030982 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030799 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014981 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL CO N O P # loop_ _database_PDB_caveat.text ;chirality error at C2' center of UAR ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 A2M 5 5 5 A2M A2M A . n A 1 6 UAR 6 6 6 UAR UAR A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 11 11 DG G B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 A2M 5 15 15 A2M A2M B . n B 1 6 UAR 6 16 16 UAR UAR B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DC 10 20 20 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 101 101 CL CL A . D 3 NCO 1 2211 2211 NCO NCO A . E 3 NCO 1 2213 2213 NCO NCO A . F 3 NCO 1 2212 2212 NCO NCO B . G 4 HOH 1 102 102 HOH HOH A . G 4 HOH 2 103 103 HOH HOH A . G 4 HOH 3 106 106 HOH HOH A . G 4 HOH 4 109 109 HOH HOH A . G 4 HOH 5 110 110 HOH HOH A . G 4 HOH 6 112 112 HOH HOH A . G 4 HOH 7 117 117 HOH HOH A . G 4 HOH 8 119 119 HOH HOH A . G 4 HOH 9 122 122 HOH HOH A . G 4 HOH 10 123 123 HOH HOH A . G 4 HOH 11 124 124 HOH HOH A . G 4 HOH 12 125 125 HOH HOH A . G 4 HOH 13 126 126 HOH HOH A . G 4 HOH 14 128 128 HOH HOH A . G 4 HOH 15 129 129 HOH HOH A . G 4 HOH 16 131 131 HOH HOH A . G 4 HOH 17 132 132 HOH HOH A . G 4 HOH 18 133 133 HOH HOH A . G 4 HOH 19 134 134 HOH HOH A . G 4 HOH 20 135 135 HOH HOH A . G 4 HOH 21 136 136 HOH HOH A . G 4 HOH 22 137 137 HOH HOH A . G 4 HOH 23 138 138 HOH HOH A . G 4 HOH 24 139 139 HOH HOH A . G 4 HOH 25 140 140 HOH HOH A . G 4 HOH 26 146 146 HOH HOH A . G 4 HOH 27 154 154 HOH HOH A . G 4 HOH 28 155 155 HOH HOH A . G 4 HOH 29 156 156 HOH HOH A . G 4 HOH 30 157 157 HOH HOH A . G 4 HOH 31 160 160 HOH HOH A . G 4 HOH 32 161 161 HOH HOH A . G 4 HOH 33 162 162 HOH HOH A . G 4 HOH 34 164 164 HOH HOH A . G 4 HOH 35 166 166 HOH HOH A . G 4 HOH 36 167 167 HOH HOH A . G 4 HOH 37 171 171 HOH HOH A . G 4 HOH 38 172 172 HOH HOH A . G 4 HOH 39 175 175 HOH HOH A . G 4 HOH 40 182 182 HOH HOH A . G 4 HOH 41 183 183 HOH HOH A . G 4 HOH 42 186 186 HOH HOH A . G 4 HOH 43 187 187 HOH HOH A . G 4 HOH 44 189 189 HOH HOH A . G 4 HOH 45 191 191 HOH HOH A . G 4 HOH 46 192 192 HOH HOH A . G 4 HOH 47 193 193 HOH HOH A . G 4 HOH 48 194 194 HOH HOH A . G 4 HOH 49 196 196 HOH HOH A . G 4 HOH 50 197 197 HOH HOH A . G 4 HOH 51 203 203 HOH HOH A . G 4 HOH 52 208 208 HOH HOH A . G 4 HOH 53 214 214 HOH HOH A . G 4 HOH 54 215 215 HOH HOH A . G 4 HOH 55 216 216 HOH HOH A . G 4 HOH 56 217 217 HOH HOH A . G 4 HOH 57 218 218 HOH HOH A . G 4 HOH 58 219 219 HOH HOH A . G 4 HOH 59 220 220 HOH HOH A . G 4 HOH 60 221 221 HOH HOH A . G 4 HOH 61 224 224 HOH HOH A . G 4 HOH 62 226 226 HOH HOH A . G 4 HOH 63 227 227 HOH HOH A . H 4 HOH 1 104 104 HOH HOH B . H 4 HOH 2 105 105 HOH HOH B . H 4 HOH 3 107 107 HOH HOH B . H 4 HOH 4 108 108 HOH HOH B . H 4 HOH 5 111 111 HOH HOH B . H 4 HOH 6 113 113 HOH HOH B . H 4 HOH 7 114 114 HOH HOH B . H 4 HOH 8 115 115 HOH HOH B . H 4 HOH 9 116 116 HOH HOH B . H 4 HOH 10 118 118 HOH HOH B . H 4 HOH 11 120 120 HOH HOH B . H 4 HOH 12 121 121 HOH HOH B . H 4 HOH 13 127 127 HOH HOH B . H 4 HOH 14 130 130 HOH HOH B . H 4 HOH 15 141 141 HOH HOH B . H 4 HOH 16 142 142 HOH HOH B . H 4 HOH 17 143 143 HOH HOH B . H 4 HOH 18 144 144 HOH HOH B . H 4 HOH 19 145 145 HOH HOH B . H 4 HOH 20 147 147 HOH HOH B . H 4 HOH 21 148 148 HOH HOH B . H 4 HOH 22 149 149 HOH HOH B . H 4 HOH 23 150 150 HOH HOH B . H 4 HOH 24 151 151 HOH HOH B . H 4 HOH 25 152 152 HOH HOH B . H 4 HOH 26 153 153 HOH HOH B . H 4 HOH 27 158 158 HOH HOH B . H 4 HOH 28 159 159 HOH HOH B . H 4 HOH 29 163 163 HOH HOH B . H 4 HOH 30 165 165 HOH HOH B . H 4 HOH 31 168 168 HOH HOH B . H 4 HOH 32 169 169 HOH HOH B . H 4 HOH 33 170 170 HOH HOH B . H 4 HOH 34 173 173 HOH HOH B . H 4 HOH 35 174 174 HOH HOH B . H 4 HOH 36 176 176 HOH HOH B . H 4 HOH 37 177 177 HOH HOH B . H 4 HOH 38 178 178 HOH HOH B . H 4 HOH 39 179 179 HOH HOH B . H 4 HOH 40 180 180 HOH HOH B . H 4 HOH 41 181 181 HOH HOH B . H 4 HOH 42 184 184 HOH HOH B . H 4 HOH 43 185 185 HOH HOH B . H 4 HOH 44 188 188 HOH HOH B . H 4 HOH 45 190 190 HOH HOH B . H 4 HOH 46 195 195 HOH HOH B . H 4 HOH 47 198 198 HOH HOH B . H 4 HOH 48 199 199 HOH HOH B . H 4 HOH 49 200 200 HOH HOH B . H 4 HOH 50 201 201 HOH HOH B . H 4 HOH 51 202 202 HOH HOH B . H 4 HOH 52 204 204 HOH HOH B . H 4 HOH 53 205 205 HOH HOH B . H 4 HOH 54 206 206 HOH HOH B . H 4 HOH 55 207 207 HOH HOH B . H 4 HOH 56 209 209 HOH HOH B . H 4 HOH 57 210 210 HOH HOH B . H 4 HOH 58 211 211 HOH HOH B . H 4 HOH 59 212 212 HOH HOH B . H 4 HOH 60 213 213 HOH HOH B . H 4 HOH 61 222 222 HOH HOH B . H 4 HOH 62 223 223 HOH HOH B . H 4 HOH 63 225 225 HOH HOH B . H 4 HOH 64 228 228 HOH HOH B . H 4 HOH 65 229 229 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A A2M 5 A A2M 5 ? A ? 2 A UAR 6 A UAR 6 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 3 B A2M 5 B A2M 15 ? A ? 4 B UAR 6 B UAR 16 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-23 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-12-28 5 'Structure model' 1 4 2017-10-18 6 'Structure model' 1 5 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model 6 6 'Structure model' struct_conn 7 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.0000 _pdbx_refine_tls.origin_y 0.0000 _pdbx_refine_tls.origin_z 0.0000 _pdbx_refine_tls.T[1][1] 0.0000 _pdbx_refine_tls.T[2][2] 0.0000 _pdbx_refine_tls.T[3][3] 0.0000 _pdbx_refine_tls.T[1][2] 0.0000 _pdbx_refine_tls.T[1][3] 0.0000 _pdbx_refine_tls.T[2][3] 0.0000 _pdbx_refine_tls.L[1][1] 0.0000 _pdbx_refine_tls.L[2][2] 0.0000 _pdbx_refine_tls.L[3][3] 0.0000 _pdbx_refine_tls.L[1][2] 0.0000 _pdbx_refine_tls.L[1][3] 0.0000 _pdbx_refine_tls.L[2][3] 0.0000 _pdbx_refine_tls.S[1][1] 0.0000 _pdbx_refine_tls.S[1][2] 0.0000 _pdbx_refine_tls.S[1][3] 0.0000 _pdbx_refine_tls.S[2][1] 0.0000 _pdbx_refine_tls.S[2][2] 0.0000 _pdbx_refine_tls.S[2][3] 0.0000 _pdbx_refine_tls.S[3][1] 0.0000 _pdbx_refine_tls.S[3][2] 0.0000 _pdbx_refine_tls.S[3][3] 0.0000 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 10 A 10 ? 'X-RAY DIFFRACTION' ? 2 1 B 11 B 1 B 20 B 10 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MAR345 'data collection' . ? 2 XDS 'data scaling' . ? 3 EPMR phasing . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A UAR 6 ? ? P A DA 7 ? ? 1.810 1.607 0.203 0.012 Y 2 1 "O3'" B UAR 16 ? ? P B DA 17 ? ? 1.836 1.607 0.229 0.012 Y 3 1 "O3'" B DG 19 ? ? "C3'" B DG 19 ? ? 1.375 1.419 -0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DC 8 ? ? "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? 103.19 110.10 -6.91 1.00 N 2 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.06 108.30 2.76 0.30 N 3 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.01 108.30 3.71 0.30 N 4 1 "C1'" B DC 18 ? ? "O4'" B DC 18 ? ? "C4'" B DC 18 ? ? 103.21 110.10 -6.89 1.00 N 5 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.16 108.30 2.86 0.30 N 6 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 112.46 108.30 4.16 0.30 N # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 "O3'" A UAR 6 ? ? P A DA 7 ? ? 1.81 2 1 "O3'" B UAR 16 ? ? P B DA 17 ? ? 1.84 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2M P P N N 1 A2M OP1 O N N 2 A2M OP3 O N N 3 A2M "O5'" O N N 4 A2M "C5'" C N N 5 A2M "C4'" C N R 6 A2M "O4'" O N N 7 A2M "C3'" C N R 8 A2M "O3'" O N N 9 A2M "C2'" C N R 10 A2M "O2'" O N N 11 A2M "C1'" C N R 12 A2M "CM'" C N N 13 A2M N9 N Y N 14 A2M C8 C Y N 15 A2M N7 N Y N 16 A2M C5 C Y N 17 A2M C6 C Y N 18 A2M N6 N N N 19 A2M N1 N Y N 20 A2M C2 C Y N 21 A2M N3 N Y N 22 A2M C4 C Y N 23 A2M HOP3 H N N 24 A2M "H5'" H N N 25 A2M "H5''" H N N 26 A2M "H4'" H N N 27 A2M "H3'" H N N 28 A2M "HO3'" H N N 29 A2M "H2'" H N N 30 A2M "H1'" H N N 31 A2M "HM'1" H N N 32 A2M "HM'2" H N N 33 A2M "HM'3" H N N 34 A2M H8 H N N 35 A2M H61 H N N 36 A2M H62 H N N 37 A2M H2 H N N 38 A2M OP2 O N N 39 A2M HOP2 H N N 40 CL CL CL N N 41 DA OP3 O N N 42 DA P P N N 43 DA OP1 O N N 44 DA OP2 O N N 45 DA "O5'" O N N 46 DA "C5'" C N N 47 DA "C4'" C N R 48 DA "O4'" O N N 49 DA "C3'" C N S 50 DA "O3'" O N N 51 DA "C2'" C N N 52 DA "C1'" C N R 53 DA N9 N Y N 54 DA C8 C Y N 55 DA N7 N Y N 56 DA C5 C Y N 57 DA C6 C Y N 58 DA N6 N N N 59 DA N1 N Y N 60 DA C2 C Y N 61 DA N3 N Y N 62 DA C4 C Y N 63 DA HOP3 H N N 64 DA HOP2 H N N 65 DA "H5'" H N N 66 DA "H5''" H N N 67 DA "H4'" H N N 68 DA "H3'" H N N 69 DA "HO3'" H N N 70 DA "H2'" H N N 71 DA "H2''" H N N 72 DA "H1'" H N N 73 DA H8 H N N 74 DA H61 H N N 75 DA H62 H N N 76 DA H2 H N N 77 DC OP3 O N N 78 DC P P N N 79 DC OP1 O N N 80 DC OP2 O N N 81 DC "O5'" O N N 82 DC "C5'" C N N 83 DC "C4'" C N R 84 DC "O4'" O N N 85 DC "C3'" C N S 86 DC "O3'" O N N 87 DC "C2'" C N N 88 DC "C1'" C N R 89 DC N1 N N N 90 DC C2 C N N 91 DC O2 O N N 92 DC N3 N N N 93 DC C4 C N N 94 DC N4 N N N 95 DC C5 C N N 96 DC C6 C N N 97 DC HOP3 H N N 98 DC HOP2 H N N 99 DC "H5'" H N N 100 DC "H5''" H N N 101 DC "H4'" H N N 102 DC "H3'" H N N 103 DC "HO3'" H N N 104 DC "H2'" H N N 105 DC "H2''" H N N 106 DC "H1'" H N N 107 DC H41 H N N 108 DC H42 H N N 109 DC H5 H N N 110 DC H6 H N N 111 DG OP3 O N N 112 DG P P N N 113 DG OP1 O N N 114 DG OP2 O N N 115 DG "O5'" O N N 116 DG "C5'" C N N 117 DG "C4'" C N R 118 DG "O4'" O N N 119 DG "C3'" C N S 120 DG "O3'" O N N 121 DG "C2'" C N N 122 DG "C1'" C N R 123 DG N9 N Y N 124 DG C8 C Y N 125 DG N7 N Y N 126 DG C5 C Y N 127 DG C6 C N N 128 DG O6 O N N 129 DG N1 N N N 130 DG C2 C N N 131 DG N2 N N N 132 DG N3 N N N 133 DG C4 C Y N 134 DG HOP3 H N N 135 DG HOP2 H N N 136 DG "H5'" H N N 137 DG "H5''" H N N 138 DG "H4'" H N N 139 DG "H3'" H N N 140 DG "HO3'" H N N 141 DG "H2'" H N N 142 DG "H2''" H N N 143 DG "H1'" H N N 144 DG H8 H N N 145 DG H1 H N N 146 DG H21 H N N 147 DG H22 H N N 148 DT OP3 O N N 149 DT P P N N 150 DT OP1 O N N 151 DT OP2 O N N 152 DT "O5'" O N N 153 DT "C5'" C N N 154 DT "C4'" C N R 155 DT "O4'" O N N 156 DT "C3'" C N S 157 DT "O3'" O N N 158 DT "C2'" C N N 159 DT "C1'" C N R 160 DT N1 N N N 161 DT C2 C N N 162 DT O2 O N N 163 DT N3 N N N 164 DT C4 C N N 165 DT O4 O N N 166 DT C5 C N N 167 DT C7 C N N 168 DT C6 C N N 169 DT HOP3 H N N 170 DT HOP2 H N N 171 DT "H5'" H N N 172 DT "H5''" H N N 173 DT "H4'" H N N 174 DT "H3'" H N N 175 DT "HO3'" H N N 176 DT "H2'" H N N 177 DT "H2''" H N N 178 DT "H1'" H N N 179 DT H3 H N N 180 DT H71 H N N 181 DT H72 H N N 182 DT H73 H N N 183 DT H6 H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 NCO CO CO N N 188 NCO N1 N N N 189 NCO N2 N N N 190 NCO N3 N N N 191 NCO N4 N N N 192 NCO N5 N N N 193 NCO N6 N N N 194 NCO HN11 H N N 195 NCO HN12 H N N 196 NCO HN13 H N N 197 NCO HN21 H N N 198 NCO HN22 H N N 199 NCO HN23 H N N 200 NCO HN31 H N N 201 NCO HN32 H N N 202 NCO HN33 H N N 203 NCO HN41 H N N 204 NCO HN42 H N N 205 NCO HN43 H N N 206 NCO HN51 H N N 207 NCO HN52 H N N 208 NCO HN53 H N N 209 NCO HN61 H N N 210 NCO HN62 H N N 211 NCO HN63 H N N 212 UAR OP3 O N N 213 UAR P P N N 214 UAR OP1 O N N 215 UAR OP2 O N N 216 UAR "O5'" O N N 217 UAR "C5'" C N N 218 UAR "C4'" C N R 219 UAR "O4'" O N N 220 UAR "C3'" C N S 221 UAR "O3'" O N N 222 UAR "C2'" C N S 223 UAR "O2'" O N N 224 UAR "C1'" C N R 225 UAR N1 N N N 226 UAR C2 C N N 227 UAR O2 O N N 228 UAR N3 N N N 229 UAR C4 C N N 230 UAR O4 O N N 231 UAR C5 C N N 232 UAR C6 C N N 233 UAR HOP3 H N N 234 UAR HOP2 H N N 235 UAR "H5'" H N N 236 UAR "H5''" H N N 237 UAR "H4'" H N N 238 UAR "H3'" H N N 239 UAR "HO3'" H N N 240 UAR "H2'" H N N 241 UAR "HO2'" H N N 242 UAR "H1'" H N N 243 UAR H3 H N N 244 UAR H5 H N N 245 UAR H6 H N N 246 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2M P OP1 doub N N 1 A2M P OP3 sing N N 2 A2M P "O5'" sing N N 3 A2M OP3 HOP3 sing N N 4 A2M "O5'" "C5'" sing N N 5 A2M "C5'" "C4'" sing N N 6 A2M "C5'" "H5'" sing N N 7 A2M "C5'" "H5''" sing N N 8 A2M "C4'" "O4'" sing N N 9 A2M "C4'" "C3'" sing N N 10 A2M "C4'" "H4'" sing N N 11 A2M "O4'" "C1'" sing N N 12 A2M "C3'" "O3'" sing N N 13 A2M "C3'" "C2'" sing N N 14 A2M "C3'" "H3'" sing N N 15 A2M "O3'" "HO3'" sing N N 16 A2M "C2'" "O2'" sing N N 17 A2M "C2'" "C1'" sing N N 18 A2M "C2'" "H2'" sing N N 19 A2M "O2'" "CM'" sing N N 20 A2M "C1'" N9 sing N N 21 A2M "C1'" "H1'" sing N N 22 A2M "CM'" "HM'1" sing N N 23 A2M "CM'" "HM'2" sing N N 24 A2M "CM'" "HM'3" sing N N 25 A2M N9 C8 sing Y N 26 A2M N9 C4 sing Y N 27 A2M C8 N7 doub Y N 28 A2M C8 H8 sing N N 29 A2M N7 C5 sing Y N 30 A2M C5 C6 sing Y N 31 A2M C5 C4 doub Y N 32 A2M C6 N6 sing N N 33 A2M C6 N1 doub Y N 34 A2M N6 H61 sing N N 35 A2M N6 H62 sing N N 36 A2M N1 C2 sing Y N 37 A2M C2 N3 doub Y N 38 A2M C2 H2 sing N N 39 A2M N3 C4 sing Y N 40 A2M P OP2 sing N N 41 A2M OP2 HOP2 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DT OP3 P sing N N 155 DT OP3 HOP3 sing N N 156 DT P OP1 doub N N 157 DT P OP2 sing N N 158 DT P "O5'" sing N N 159 DT OP2 HOP2 sing N N 160 DT "O5'" "C5'" sing N N 161 DT "C5'" "C4'" sing N N 162 DT "C5'" "H5'" sing N N 163 DT "C5'" "H5''" sing N N 164 DT "C4'" "O4'" sing N N 165 DT "C4'" "C3'" sing N N 166 DT "C4'" "H4'" sing N N 167 DT "O4'" "C1'" sing N N 168 DT "C3'" "O3'" sing N N 169 DT "C3'" "C2'" sing N N 170 DT "C3'" "H3'" sing N N 171 DT "O3'" "HO3'" sing N N 172 DT "C2'" "C1'" sing N N 173 DT "C2'" "H2'" sing N N 174 DT "C2'" "H2''" sing N N 175 DT "C1'" N1 sing N N 176 DT "C1'" "H1'" sing N N 177 DT N1 C2 sing N N 178 DT N1 C6 sing N N 179 DT C2 O2 doub N N 180 DT C2 N3 sing N N 181 DT N3 C4 sing N N 182 DT N3 H3 sing N N 183 DT C4 O4 doub N N 184 DT C4 C5 sing N N 185 DT C5 C7 sing N N 186 DT C5 C6 doub N N 187 DT C7 H71 sing N N 188 DT C7 H72 sing N N 189 DT C7 H73 sing N N 190 DT C6 H6 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 NCO CO N1 sing N N 194 NCO CO N2 sing N N 195 NCO CO N3 sing N N 196 NCO CO N4 sing N N 197 NCO CO N5 sing N N 198 NCO CO N6 sing N N 199 NCO N1 HN11 sing N N 200 NCO N1 HN12 sing N N 201 NCO N1 HN13 sing N N 202 NCO N2 HN21 sing N N 203 NCO N2 HN22 sing N N 204 NCO N2 HN23 sing N N 205 NCO N3 HN31 sing N N 206 NCO N3 HN32 sing N N 207 NCO N3 HN33 sing N N 208 NCO N4 HN41 sing N N 209 NCO N4 HN42 sing N N 210 NCO N4 HN43 sing N N 211 NCO N5 HN51 sing N N 212 NCO N5 HN52 sing N N 213 NCO N5 HN53 sing N N 214 NCO N6 HN61 sing N N 215 NCO N6 HN62 sing N N 216 NCO N6 HN63 sing N N 217 UAR OP3 P sing N N 218 UAR OP3 HOP3 sing N N 219 UAR P OP1 doub N N 220 UAR P OP2 sing N N 221 UAR P "O5'" sing N N 222 UAR OP2 HOP2 sing N N 223 UAR "O5'" "C5'" sing N N 224 UAR "C5'" "C4'" sing N N 225 UAR "C5'" "H5'" sing N N 226 UAR "C5'" "H5''" sing N N 227 UAR "C4'" "O4'" sing N N 228 UAR "C4'" "C3'" sing N N 229 UAR "C4'" "H4'" sing N N 230 UAR "O4'" "C1'" sing N N 231 UAR "C3'" "O3'" sing N N 232 UAR "C3'" "C2'" sing N N 233 UAR "C3'" "H3'" sing N N 234 UAR "O3'" "HO3'" sing N N 235 UAR "C2'" "O2'" sing N N 236 UAR "C2'" "C1'" sing N N 237 UAR "C2'" "H2'" sing N N 238 UAR "O2'" "HO2'" sing N N 239 UAR "C1'" N1 sing N N 240 UAR "C1'" "H1'" sing N N 241 UAR N1 C2 sing N N 242 UAR N1 C6 sing N N 243 UAR C2 O2 doub N N 244 UAR C2 N3 sing N N 245 UAR N3 C4 sing N N 246 UAR N3 H3 sing N N 247 UAR C4 O4 doub N N 248 UAR C4 C5 sing N N 249 UAR C5 C6 doub N N 250 UAR C5 H5 sing N N 251 UAR C6 H6 sing N N 252 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2FIJ 'double helix' 2FIJ 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.295 -0.123 -0.368 -13.605 -13.881 0.451 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.285 -0.201 0.118 -20.684 -3.906 -1.672 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.153 -0.091 -0.130 -17.243 -10.312 1.804 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.085 -0.138 0.184 -4.155 0.530 -1.921 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A A2M 5 1_555 B UAR 6 1_555 0.041 -0.139 0.351 19.638 -5.412 3.235 5 A_A2M5:UAR16_B A 5 ? B 16 ? 20 1 1 A UAR 6 1_555 B A2M 5 1_555 -0.021 -0.115 0.359 -19.391 -4.925 2.908 6 A_UAR6:A2M15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 0.066 -0.131 0.169 4.212 0.212 -1.763 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.157 -0.074 -0.098 16.741 -10.360 2.108 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.278 -0.189 0.125 22.555 -3.034 -1.966 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.303 -0.110 -0.393 13.499 -14.471 0.651 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.533 -1.344 3.410 -1.972 1.420 39.010 -2.187 0.551 3.383 2.125 2.949 39.083 1 AA_DG1DC2:DG19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.303 -0.948 3.237 2.883 13.948 26.816 -4.428 -0.039 2.472 27.730 -5.732 30.302 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.856 -0.731 2.971 -0.618 5.548 28.588 -2.535 1.583 2.800 11.102 1.236 29.116 3 AA_DG3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A A2M 5 1_555 B UAR 6 1_555 0.810 -0.097 2.775 1.559 5.486 32.475 -0.966 -1.202 2.757 9.716 -2.761 32.958 4 AA_DT4A2M5:UAR16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A A2M 5 1_555 B UAR 6 1_555 A UAR 6 1_555 B A2M 5 1_555 -0.036 -1.055 5.039 -0.026 51.677 21.601 -5.391 0.036 1.054 68.845 0.035 55.723 5 AA_A2M5UAR6:A2M15UAR16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A UAR 6 1_555 B A2M 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.750 -0.189 2.776 -1.307 5.476 31.892 -1.159 1.149 2.734 9.870 2.355 32.373 6 AA_UAR6DA7:DT14A2M15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.868 -0.726 2.977 0.432 5.601 28.536 -2.540 -1.645 2.799 11.225 -0.865 29.073 7 AA_DA7DC8:DG13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.347 -0.916 3.178 -2.712 13.800 26.391 -4.401 0.159 2.433 27.852 5.473 29.846 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.506 -1.339 3.446 1.699 1.868 39.726 -2.194 -0.536 3.400 2.745 -2.498 39.803 9 AA_DG9DC10:DG11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'COBALT HEXAMMINE(III)' NCO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DPL _pdbx_initial_refinement_model.details 'NDB entry AD0007/PDB entry 1DPL' #