HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-DEC-05 2FIY TITLE THE CRYSTAL STRUCTURE OF THE FDHE PROTEIN FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FDHE HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: FDHE GI:9951077; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FDHE PROTEIN, PSEUDOMONAS AERUGINOSA, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 30-OCT-24 2FIY 1 REMARK LINK REVDAT 3 13-JUL-11 2FIY 1 VERSN REVDAT 2 24-FEB-09 2FIY 1 VERSN REVDAT 1 14-FEB-06 2FIY 0 JRNL AUTH R.ZHANG,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE FDHE PROTEIN FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA PAO1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1890 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2497 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.745 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4470 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4170 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6072 ; 1.407 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9643 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 6.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;36.561 ;22.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;16.758 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.219 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4977 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 905 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1025 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4176 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2073 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2634 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 306 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 118 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3620 ; 0.931 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1135 ; 0.125 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4452 ; 1.051 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1912 ; 1.467 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1620 ; 2.128 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 78 REMARK 3 RESIDUE RANGE : A 79 A 180 REMARK 3 RESIDUE RANGE : A 181 A 250 REMARK 3 RESIDUE RANGE : A 251 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2050 96.4260 51.6310 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: -0.1297 REMARK 3 T33: -0.1193 T12: 0.0152 REMARK 3 T13: 0.0489 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.5549 L22: 2.4971 REMARK 3 L33: 1.7231 L12: -0.0422 REMARK 3 L13: -0.1417 L23: 0.1655 REMARK 3 S TENSOR REMARK 3 S11: 0.0961 S12: 0.0538 S13: 0.1357 REMARK 3 S21: -0.0150 S22: -0.0233 S23: -0.2280 REMARK 3 S31: -0.2212 S32: -0.0217 S33: -0.0728 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 78 REMARK 3 RESIDUE RANGE : B 79 B 182 REMARK 3 RESIDUE RANGE : B 183 B 250 REMARK 3 RESIDUE RANGE : B 251 B 308 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6720 47.4860 52.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: -0.1808 REMARK 3 T33: -0.1913 T12: 0.0408 REMARK 3 T13: -0.0357 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.3079 L22: 3.1053 REMARK 3 L33: 2.8972 L12: 0.4225 REMARK 3 L13: -0.2393 L23: 0.4154 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: 0.0295 S13: -0.2351 REMARK 3 S21: 0.1703 S22: 0.0320 S23: 0.1140 REMARK 3 S31: 0.0657 S32: 0.0681 S33: 0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35601 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 97.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M (NH4)2SO4, 0.1M TRIS PH8.5, 25% REMARK 280 P 5K MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 GLN A 10 REMARK 465 ILE A 11 REMARK 465 GLU A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ASN A 16 REMARK 465 ILE A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 200 REMARK 465 GLY A 201 REMARK 465 LYS A 202 REMARK 465 GLU A 203 REMARK 465 ASP A 242 REMARK 465 GLU A 309 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 THR B 4 REMARK 465 ILE B 5 REMARK 465 LEU B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 465 GLN B 10 REMARK 465 ILE B 11 REMARK 465 GLU B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 15 REMARK 465 ASN B 16 REMARK 465 ILE B 17 REMARK 465 GLU B 172 REMARK 465 GLU B 180 REMARK 465 SER B 181 REMARK 465 GLY B 200 REMARK 465 GLY B 201 REMARK 465 LYS B 202 REMARK 465 GLU B 203 REMARK 465 GLU B 240 REMARK 465 HIS B 241 REMARK 465 ASP B 242 REMARK 465 GLU B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 231 OG REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 SER B 231 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 180 O HOH A 422 1.93 REMARK 500 O HIS A 233 O HOH A 602 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 255 C THR A 255 O -0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU A 148 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 89 114.06 -37.84 REMARK 500 GLU A 172 52.62 70.36 REMARK 500 SER A 181 59.44 -142.10 REMARK 500 ILE A 223 47.80 -108.99 REMARK 500 HIS A 227 -77.69 -108.69 REMARK 500 HIS A 233 97.80 -41.74 REMARK 500 ASP A 271 105.16 -161.17 REMARK 500 ALA B 89 112.09 -35.69 REMARK 500 ALA B 114 -87.53 -72.84 REMARK 500 ILE B 223 57.10 -109.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 171 GLU A 172 48.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 255 10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 185 SG REMARK 620 2 CYS A 188 SG 114.1 REMARK 620 3 CYS A 211 SG 109.1 94.9 REMARK 620 4 CYS A 214 SG 104.5 122.0 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 225 SG REMARK 620 2 CYS A 228 SG 104.2 REMARK 620 3 CYS A 256 SG 104.8 107.1 REMARK 620 4 CYS A 259 SG 102.7 123.9 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 20 NE2 REMARK 620 2 HIS B 22 NE2 105.6 REMARK 620 3 GLU B 173 OE1 100.1 130.9 REMARK 620 4 GLU B 173 OE2 129.8 82.1 49.8 REMARK 620 5 HIS B 219 NE2 118.1 113.0 89.4 102.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 185 SG REMARK 620 2 CYS B 188 SG 115.7 REMARK 620 3 CYS B 211 SG 107.8 93.6 REMARK 620 4 CYS B 214 SG 106.5 121.8 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 CYS B 228 SG 127.8 REMARK 620 3 CYS B 256 SG 113.1 118.2 REMARK 620 4 CYS B 259 SG 100.9 64.1 116.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5764 RELATED DB: TARGETDB DBREF 2FIY A 1 309 UNP Q9HV00 FDHE_PSEAE 1 309 DBREF 2FIY B 1 309 UNP Q9HV00 FDHE_PSEAE 1 309 SEQRES 1 A 309 MET SER ARG THR ILE LEU GLN PRO GLY GLN ILE GLU ALA SEQRES 2 A 309 ALA ALA ASN ILE PRO PRO HIS LEU HIS GLN PRO SER ARG SEQRES 3 A 309 ASP LEU PHE ALA ARG ARG GLY GLU ARG LEU LEU GLN LEU SEQRES 4 A 309 ALA GLU GLY HIS PRO MET GLY ASP TYR LEU ARG LEU VAL SEQRES 5 A 309 ALA GLY LEU CYS ARG LEU GLN GLN ALA LEU LEU ASP ASN SEQRES 6 A 309 PRO PRO ALA LEU ALA PRO LEU ASP PRO GLU ARG LEU ARG SEQRES 7 A 309 LYS SER ARG GLU HIS GLY MET PRO PRO LEU ALA TYR ASP SEQRES 8 A 309 LEU LEU VAL ARG GLU GLY ALA TRP LEU PRO TRP LEU ASP SEQRES 9 A 309 ALA LEU LEU ALA GLY TYR PRO ALA PRO ALA ASN ALA ALA SEQRES 10 A 309 VAL GLY ALA ALA LEU GLU GLN LEU ARG GLU ALA GLU GLU SEQRES 11 A 309 GLY GLN ARG LYS ALA TRP ALA ILE ALA LEU LEU SER GLY SEQRES 12 A 309 GLN PHE ASP LEU LEU PRO ALA ALA LEU VAL PRO PHE LEU SEQRES 13 A 309 GLY ALA ALA LEU GLN VAL ALA TRP SER HIS TRP LEU LEU SEQRES 14 A 309 GLY LEU GLU GLU GLY ALA VAL VAL GLU THR GLU SER ARG SEQRES 15 A 309 THR LEU CYS PRO ALA CYS GLY SER PRO PRO MET ALA GLY SEQRES 16 A 309 MET ILE ARG GLN GLY GLY LYS GLU THR GLY LEU ARG TYR SEQRES 17 A 309 LEU SER CYS SER LEU CYS ALA CYS GLU TRP HIS TYR VAL SEQRES 18 A 309 ARG ILE LYS CYS SER HIS CYS GLU GLU SER LYS HIS LEU SEQRES 19 A 309 ALA TYR LEU SER LEU GLU HIS ASP GLY GLN PRO ALA GLU SEQRES 20 A 309 LYS ALA VAL LEU ARG ALA GLU THR CYS PRO SER CYS GLN SEQRES 21 A 309 GLY TYR LEU LYS GLN PHE TYR LEU GLU PHE ASP ARG HIS SEQRES 22 A 309 ALA ASP ALA LEU ALA ASP ASP LEU ALA SER LEU ALA LEU SEQRES 23 A 309 ASP MET ARG LEU ALA GLU ASP GLY TYR LEU ARG ARG SER SEQRES 24 A 309 PRO ASN LEU LEU LEU ALA PRO GLY GLY GLU SEQRES 1 B 309 MET SER ARG THR ILE LEU GLN PRO GLY GLN ILE GLU ALA SEQRES 2 B 309 ALA ALA ASN ILE PRO PRO HIS LEU HIS GLN PRO SER ARG SEQRES 3 B 309 ASP LEU PHE ALA ARG ARG GLY GLU ARG LEU LEU GLN LEU SEQRES 4 B 309 ALA GLU GLY HIS PRO MET GLY ASP TYR LEU ARG LEU VAL SEQRES 5 B 309 ALA GLY LEU CYS ARG LEU GLN GLN ALA LEU LEU ASP ASN SEQRES 6 B 309 PRO PRO ALA LEU ALA PRO LEU ASP PRO GLU ARG LEU ARG SEQRES 7 B 309 LYS SER ARG GLU HIS GLY MET PRO PRO LEU ALA TYR ASP SEQRES 8 B 309 LEU LEU VAL ARG GLU GLY ALA TRP LEU PRO TRP LEU ASP SEQRES 9 B 309 ALA LEU LEU ALA GLY TYR PRO ALA PRO ALA ASN ALA ALA SEQRES 10 B 309 VAL GLY ALA ALA LEU GLU GLN LEU ARG GLU ALA GLU GLU SEQRES 11 B 309 GLY GLN ARG LYS ALA TRP ALA ILE ALA LEU LEU SER GLY SEQRES 12 B 309 GLN PHE ASP LEU LEU PRO ALA ALA LEU VAL PRO PHE LEU SEQRES 13 B 309 GLY ALA ALA LEU GLN VAL ALA TRP SER HIS TRP LEU LEU SEQRES 14 B 309 GLY LEU GLU GLU GLY ALA VAL VAL GLU THR GLU SER ARG SEQRES 15 B 309 THR LEU CYS PRO ALA CYS GLY SER PRO PRO MET ALA GLY SEQRES 16 B 309 MET ILE ARG GLN GLY GLY LYS GLU THR GLY LEU ARG TYR SEQRES 17 B 309 LEU SER CYS SER LEU CYS ALA CYS GLU TRP HIS TYR VAL SEQRES 18 B 309 ARG ILE LYS CYS SER HIS CYS GLU GLU SER LYS HIS LEU SEQRES 19 B 309 ALA TYR LEU SER LEU GLU HIS ASP GLY GLN PRO ALA GLU SEQRES 20 B 309 LYS ALA VAL LEU ARG ALA GLU THR CYS PRO SER CYS GLN SEQRES 21 B 309 GLY TYR LEU LYS GLN PHE TYR LEU GLU PHE ASP ARG HIS SEQRES 22 B 309 ALA ASP ALA LEU ALA ASP ASP LEU ALA SER LEU ALA LEU SEQRES 23 B 309 ASP MET ARG LEU ALA GLU ASP GLY TYR LEU ARG ARG SER SEQRES 24 B 309 PRO ASN LEU LEU LEU ALA PRO GLY GLY GLU HET FE A 401 1 HET FE A 403 1 HET FE B 402 1 HET FE B 404 1 HET FE B 405 1 HETNAM FE FE (III) ION FORMUL 3 FE 5(FE 3+) FORMUL 8 HOH *369(H2 O) HELIX 1 1 ASP A 27 GLU A 41 1 15 HELIX 2 2 MET A 45 ASP A 64 1 20 HELIX 3 3 ASP A 73 HIS A 83 1 11 HELIX 4 4 ALA A 89 GLY A 97 1 9 HELIX 5 5 TRP A 99 GLY A 109 1 11 HELIX 6 6 ASN A 115 ALA A 128 1 14 HELIX 7 7 GLU A 129 SER A 142 1 14 HELIX 8 8 GLN A 144 LEU A 148 5 5 HELIX 9 9 PRO A 149 ALA A 151 5 3 HELIX 10 10 LEU A 152 GLY A 170 1 19 HELIX 11 11 ASP A 275 ALA A 282 1 8 HELIX 12 12 SER A 283 ASP A 293 1 11 HELIX 13 13 ASP B 27 GLU B 41 1 15 HELIX 14 14 MET B 45 ASN B 65 1 21 HELIX 15 15 ASP B 73 HIS B 83 1 11 HELIX 16 16 ALA B 89 GLY B 97 1 9 HELIX 17 17 TRP B 99 GLY B 109 1 11 HELIX 18 18 ASN B 115 ALA B 128 1 14 HELIX 19 19 GLU B 129 SER B 142 1 14 HELIX 20 20 GLY B 143 LEU B 148 5 6 HELIX 21 21 PRO B 149 ALA B 151 5 3 HELIX 22 22 LEU B 152 GLY B 170 1 19 HELIX 23 23 PRO B 245 ALA B 249 5 5 HELIX 24 24 ASP B 275 ALA B 282 1 8 HELIX 25 25 SER B 283 ASP B 293 1 11 SHEET 1 A 7 LEU A 21 HIS A 22 0 SHEET 2 A 7 GLU A 217 HIS A 219 -1 O GLU A 217 N HIS A 22 SHEET 3 A 7 LEU A 206 CYS A 211 -1 N LEU A 209 O TRP A 218 SHEET 4 A 7 PRO A 192 ARG A 198 -1 N MET A 193 O SER A 210 SHEET 5 A 7 GLY A 261 TYR A 267 1 O PHE A 266 N ILE A 197 SHEET 6 A 7 LEU A 251 GLU A 254 -1 N GLU A 254 O LEU A 263 SHEET 7 A 7 TYR A 236 LEU A 237 -1 N LEU A 237 O ALA A 253 SHEET 1 B 6 LEU A 21 HIS A 22 0 SHEET 2 B 6 GLU A 217 HIS A 219 -1 O GLU A 217 N HIS A 22 SHEET 3 B 6 LEU A 206 CYS A 211 -1 N LEU A 209 O TRP A 218 SHEET 4 B 6 PRO A 192 ARG A 198 -1 N MET A 193 O SER A 210 SHEET 5 B 6 GLY A 261 TYR A 267 1 O PHE A 266 N ILE A 197 SHEET 6 B 6 LEU A 296 ARG A 297 1 O LEU A 296 N TYR A 262 SHEET 1 C 6 GLU B 217 HIS B 219 0 SHEET 2 C 6 LEU B 206 CYS B 211 -1 N LEU B 209 O TRP B 218 SHEET 3 C 6 PRO B 192 ARG B 198 -1 N MET B 196 O TYR B 208 SHEET 4 C 6 GLY B 261 TYR B 267 1 O PHE B 266 N ILE B 197 SHEET 5 C 6 LEU B 251 CYS B 256 -1 N GLU B 254 O LEU B 263 SHEET 6 C 6 ALA B 235 LEU B 237 -1 N LEU B 237 O ALA B 253 SHEET 1 D 5 GLU B 217 HIS B 219 0 SHEET 2 D 5 LEU B 206 CYS B 211 -1 N LEU B 209 O TRP B 218 SHEET 3 D 5 PRO B 192 ARG B 198 -1 N MET B 196 O TYR B 208 SHEET 4 D 5 GLY B 261 TYR B 267 1 O PHE B 266 N ILE B 197 SHEET 5 D 5 LEU B 296 ARG B 297 1 O LEU B 296 N TYR B 262 SSBOND 1 CYS B 228 CYS B 259 1555 1555 2.08 LINK SG CYS A 185 FE FE A 401 1555 1555 2.28 LINK SG CYS A 188 FE FE A 401 1555 1555 2.35 LINK SG CYS A 211 FE FE A 401 1555 1555 2.38 LINK SG CYS A 214 FE FE A 401 1555 1555 2.32 LINK SG CYS A 225 FE FE A 403 1555 1555 2.63 LINK SG CYS A 228 FE FE A 403 1555 1555 2.45 LINK SG CYS A 256 FE FE A 403 1555 1555 2.41 LINK SG CYS A 259 FE FE A 403 1555 1555 1.89 LINK NE2 HIS B 20 FE FE B 405 1555 1555 2.10 LINK NE2 HIS B 22 FE FE B 405 1555 1555 2.06 LINK OE1 GLU B 173 FE FE B 405 4566 1555 2.73 LINK OE2 GLU B 173 FE FE B 405 4566 1555 2.40 LINK SG CYS B 185 FE FE B 402 1555 1555 2.30 LINK SG CYS B 188 FE FE B 402 1555 1555 2.39 LINK SG CYS B 211 FE FE B 402 1555 1555 2.40 LINK SG CYS B 214 FE FE B 402 1555 1555 2.35 LINK NE2 HIS B 219 FE FE B 405 1555 1555 2.09 LINK SG CYS B 225 FE FE B 404 1555 1555 2.41 LINK SG CYS B 228 FE FE B 404 1555 1555 2.13 LINK SG CYS B 256 FE FE B 404 1555 1555 2.41 LINK SG CYS B 259 FE FE B 404 1555 1555 1.74 CISPEP 1 PRO A 306 GLY A 307 0 9.66 CISPEP 2 GLY A 307 GLY A 308 0 -1.04 CISPEP 3 PRO B 306 GLY B 307 0 -4.08 CISPEP 4 GLY B 307 GLY B 308 0 19.03 SITE 1 AC1 4 CYS A 185 CYS A 188 CYS A 211 CYS A 214 SITE 1 AC2 4 CYS B 185 CYS B 188 CYS B 211 CYS B 214 SITE 1 AC3 4 CYS A 225 CYS A 228 CYS A 256 CYS A 259 SITE 1 AC4 4 CYS B 225 CYS B 228 CYS B 256 CYS B 259 SITE 1 AC5 4 HIS B 20 HIS B 22 GLU B 173 HIS B 219 CRYST1 46.261 96.617 140.620 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007111 0.00000