HEADER VIRAL PROTEIN 04-JAN-06 2FKK TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE BACTERIOPHAGE T4 TITLE 2 GENE PRODUCT 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASEPLATE STRUCTURAL PROTEIN GP10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: BASEPLATE WEDGE PROTEIN 10; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 STRAIN: D; SOURCE 5 GENE: 10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BACTERIOPHAGE T4; BASEPLATE; TAIL; EVOLUTION; GP10; STRUCTURAL KEYWDS 2 COMPARISONS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.G.LEIMAN,M.M.SHNEIDER,V.V.MESYANZHINOV,M.G.ROSSMANN REVDAT 6 14-FEB-24 2FKK 1 REMARK REVDAT 5 20-OCT-21 2FKK 1 REMARK SEQADV REVDAT 4 13-JUL-11 2FKK 1 VERSN REVDAT 3 24-FEB-09 2FKK 1 VERSN REVDAT 2 09-MAY-06 2FKK 1 JRNL REVDAT 1 04-APR-06 2FKK 0 JRNL AUTH P.G.LEIMAN,M.M.SHNEIDER,V.V.MESYANZHINOV,M.G.ROSSMANN JRNL TITL EVOLUTION OF BACTERIOPHAGE TAILS: STRUCTURE OF T4 GENE JRNL TITL 2 PRODUCT 10 JRNL REF J.MOL.BIOL. V. 358 912 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16554069 JRNL DOI 10.1016/J.JMB.2006.02.058 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.120 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.120 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2633 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 105438 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1419 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.085 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.128 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 2.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : BENT CONICAL SI-MIRROR (RH REMARK 200 COATED), BENT GE(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATED), BENT GE(111) REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG1000, 8% PEG8000, 100 MM GLYCINE REMARK 280 -HCL PH 2.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER. THE SECOND AND THIRD REMARK 300 CHAINS CAN BE GENERATED BY USING THE SYMMETRY OPERATORS OF THE REMARK 300 CRYSTALLOGRAPHIC THREEFOLD AXIS: -Y+1, X-Y, Z AND Y-X+1, -X+1, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 69.84300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 34.92150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 60.48581 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 BR BR A 701 LIES ON A SPECIAL POSITION. REMARK 375 P PO3 A 710 LIES ON A SPECIAL POSITION. REMARK 375 C TRS A 801 LIES ON A SPECIAL POSITION. REMARK 375 N TRS A 801 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1016 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1020 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1049 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1050 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1054 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 397 REMARK 465 GLU A 398 REMARK 465 ILE A 399 REMARK 465 ILE A 400 REMARK 465 ASP A 401 REMARK 465 GLU A 402 REMARK 465 THR A 403 REMARK 465 ASP A 404 REMARK 465 ASN A 405 REMARK 465 GLY A 553 REMARK 465 GLY A 554 REMARK 465 CYS A 555 REMARK 465 GLN A 556 REMARK 465 TYR A 557 REMARK 465 ASP A 558 REMARK 465 PRO A 559 REMARK 465 ASP A 560 REMARK 465 GLU A 561 REMARK 465 SER A 562 REMARK 465 GLY A 563 REMARK 465 PRO A 564 REMARK 465 ILE A 565 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 427 CE NZ REMARK 480 LYS A 568 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 406 CA - CB - CG ANGL. DEV. = 27.6 DEGREES REMARK 500 ASP A 426 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 441 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 GLU A 442 CG - CD - OE1 ANGL. DEV. = 12.6 DEGREES REMARK 500 TYR A 454 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR A 454 CD1 - CG - CD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 VAL A 486 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 VAL A 486 CA - CB - CG2 ANGL. DEV. = -14.8 DEGREES REMARK 500 GLU A 492 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 507 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR A 566 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 TYR A 566 CB - CG - CD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 570 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 570 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 426 -79.68 -87.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FL8 RELATED DB: PDB REMARK 900 FITTING OF THE GP10 TRIMER STRUCTURE INTO THE CRYOEM MAP OF THE REMARK 900 BACTERIOPHAGE T4 BASEPLATE IN THE HEXAGONAL CONFORMATION. REMARK 900 RELATED ID: 2FL9 RELATED DB: PDB REMARK 900 FITTING OF THE GP10 TRIMER STRUCTURE INTO THE CRYOEM MAP OF THE REMARK 900 BACTERIOPHAGE T4 BASEPLATE IN THE STAR CONFORMATION. DBREF 2FKK A 397 602 UNP P10928 VG10_BPT4 397 602 SEQADV 2FKK GLU A 442 UNP P10928 ALA 442 ENGINEERED MUTATION SEQADV 2FKK THR A 530 UNP P10928 ALA 530 ENGINEERED MUTATION SEQRES 1 A 206 ASP GLU ILE ILE ASP GLU THR ASP ASN LEU TYR VAL SER SEQRES 2 A 206 GLN GLY PRO GLY VAL ASP ILE SER GLY ASP VAL ASN LEU SEQRES 3 A 206 THR ASP PHE ASP LYS ILE GLY TRP PRO ASN VAL GLU ALA SEQRES 4 A 206 VAL GLN SER TYR GLN ARG GLU PHE ASN ALA VAL SER ASN SEQRES 5 A 206 ILE PHE ASP THR ILE TYR PRO ILE GLY THR ILE TYR GLU SEQRES 6 A 206 ASN ALA VAL ASN PRO ASN ASN PRO VAL THR TYR MET GLY SEQRES 7 A 206 PHE GLY SER TRP LYS LEU PHE GLY GLN GLY LYS VAL LEU SEQRES 8 A 206 VAL GLY TRP ASN GLU ASP ILE SER ASP PRO ASN PHE ALA SEQRES 9 A 206 LEU ASN ASN ASN ASP LEU ASP SER GLY GLY ASN PRO SER SEQRES 10 A 206 HIS THR ALA GLY GLY THR GLY GLY SER THR SER VAL THR SEQRES 11 A 206 LEU GLU ASN THR ASN LEU PRO ALA THR GLU THR ASP GLU SEQRES 12 A 206 GLU VAL LEU ILE VAL ASP GLU ASN GLY SER VAL ILE VAL SEQRES 13 A 206 GLY GLY CYS GLN TYR ASP PRO ASP GLU SER GLY PRO ILE SEQRES 14 A 206 TYR THR LYS TYR ARG GLU ALA LYS ALA SER THR ASN SER SEQRES 15 A 206 THR HIS THR PRO PRO THR SER ILE THR ASN ILE GLN PRO SEQRES 16 A 206 TYR ILE THR VAL TYR ARG TRP ILE ARG ILE ALA HET BR A 701 1 HET PO3 A 710 4 HET TRS A 801 8 HET EDO A 901 24 HET EDO A 902 8 HET EDO A 903 16 HET EDO A 904 8 HETNAM BR BROMIDE ION HETNAM PO3 PHOSPHITE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BR BR 1- FORMUL 3 PO3 O3 P 3- FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *363(H2 O) HELIX 1 1 ALA A 445 TYR A 454 1 10 HELIX 2 2 PRO A 469 GLY A 474 1 6 HELIX 3 3 GLU A 528 LEU A 532 5 5 SHEET 1 A 2 VAL A 414 ILE A 416 0 SHEET 2 A 2 TYR A 439 ARG A 441 -1 O ARG A 441 N VAL A 414 SHEET 1 B 2 VAL A 420 LEU A 422 0 SHEET 2 B 2 VAL A 433 ALA A 435 -1 O GLU A 434 N ASN A 421 SHEET 1 C 3 ILE A 459 ASN A 462 0 SHEET 2 C 3 TYR A 596 ALA A 602 -1 O TRP A 598 N TYR A 460 SHEET 3 C 3 SER A 477 LEU A 480 -1 N LYS A 479 O ILE A 599 SHEET 1 D 2 ASN A 502 LEU A 506 0 SHEET 2 D 2 PRO A 512 SER A 513 -1 O SER A 513 N ASN A 502 SHEET 1 E 2 SER A 524 VAL A 525 0 SHEET 2 E 2 ILE A 586 THR A 587 -1 O ILE A 586 N VAL A 525 CISPEP 1 TRP A 430 PRO A 431 0 15.22 CISPEP 2 THR A 581 PRO A 582 0 -0.25 SITE 1 AC1 2 ASN A 588 HOH A1049 SITE 1 AC2 3 THR A 535 HOH A1010 HOH A1054 SITE 1 AC3 4 VAL A 525 ILE A 586 THR A 587 ASN A 588 SITE 1 AC4 11 ASP A 419 ARG A 441 ASP A 451 PRO A 455 SITE 2 AC4 11 ILE A 456 ARG A 600 HOH A1083 HOH A1116 SITE 3 AC4 11 HOH A1164 HOH A1175 HOH A1316 SITE 1 AC5 2 TYR A 439 HOH A1116 SITE 1 AC6 9 ALA A 534 THR A 535 GLU A 536 SER A 575 SITE 2 AC6 9 SER A 578 HOH A1100 HOH A1133 HOH A1261 SITE 3 AC6 9 HOH A1304 SITE 1 AC7 5 LEU A 501 PRO A 512 GLU A 546 HOH A1245 SITE 2 AC7 5 HOH A1264 CRYST1 69.843 69.843 119.672 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014318 0.008266 0.000000 0.00000 SCALE2 0.000000 0.016533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008356 0.00000