HEADER ISOMERASE 04-JAN-06 2FKM TITLE PMM/PGM S108D MUTANT WITH ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: PMM / PGM; COMPND 5 EC: 5.4.2.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: ALGC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3-A KEYWDS ALPHA/BETA PROTEIN, ENZYME-METAL COMPLEX, ENZYME-LIGAND COMPLEX, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.REGNI,L.J.BEAMER REVDAT 8 30-AUG-23 2FKM 1 REMARK REVDAT 7 20-OCT-21 2FKM 1 SEQADV HETSYN REVDAT 6 29-JUL-20 2FKM 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 24-JUL-19 2FKM 1 REMARK REVDAT 4 13-JUL-11 2FKM 1 VERSN REVDAT 3 24-FEB-09 2FKM 1 VERSN REVDAT 2 03-OCT-06 2FKM 1 JRNL REVDAT 1 04-APR-06 2FKM 0 JRNL AUTH C.REGNI,A.M.SCHRAMM,L.J.BEAMER JRNL TITL THE REACTION OF PHOSPHOHEXOMUTASE FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA: STRUCTURAL INSIGHTS INTO A SIMPLE PROCESSIVE JRNL TITL 3 ENZYME. JRNL REF J.BIOL.CHEM. V. 281 15564 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16595672 JRNL DOI 10.1074/JBC.M600590200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1699 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4592 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.169 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3470 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3229 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4728 ; 1.225 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7473 ; 0.761 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 5.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;35.175 ;23.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;13.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.740 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3922 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 758 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3549 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1762 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2180 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.024 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2890 ; 0.552 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 932 ; 0.109 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3611 ; 0.668 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1392 ; 1.766 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1117 ; 2.484 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 256 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4164 74.3472 25.4100 REMARK 3 T TENSOR REMARK 3 T11: -0.1081 T22: -0.1208 REMARK 3 T33: -0.1532 T12: -0.0187 REMARK 3 T13: -0.0067 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.5465 L22: 1.2228 REMARK 3 L33: 0.9949 L12: -0.8562 REMARK 3 L13: -1.3021 L23: 0.4880 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: -0.2729 S13: 0.1126 REMARK 3 S21: 0.1008 S22: 0.1259 S23: -0.0881 REMARK 3 S31: -0.0511 S32: 0.1509 S33: -0.0608 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 257 X 368 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3875 62.9683 29.9302 REMARK 3 T TENSOR REMARK 3 T11: -0.1454 T22: -0.1132 REMARK 3 T33: -0.1503 T12: -0.0053 REMARK 3 T13: 0.0082 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.4601 L22: 2.2056 REMARK 3 L33: 0.7607 L12: 0.1080 REMARK 3 L13: -0.1464 L23: -0.5584 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0372 S13: -0.0371 REMARK 3 S21: 0.0802 S22: 0.0423 S23: 0.2388 REMARK 3 S31: 0.0109 S32: -0.0936 S33: -0.0393 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 369 X 463 REMARK 3 RESIDUE RANGE : X 464 X 464 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7314 56.0178 49.6879 REMARK 3 T TENSOR REMARK 3 T11: -0.1254 T22: -0.1280 REMARK 3 T33: -0.1720 T12: 0.0024 REMARK 3 T13: 0.0025 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 6.4394 L22: 1.8489 REMARK 3 L33: 3.0838 L12: -0.2273 REMARK 3 L13: 0.1982 L23: 0.3377 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.3832 S13: -0.0324 REMARK 3 S21: 0.2318 S22: -0.0418 S23: 0.0346 REMARK 3 S31: -0.0314 S32: -0.1235 S33: 0.0557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97909 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.3LDZ REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33583 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.490 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ID 1P5D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50-60% SAT NA K TARTRATE, .1 M NA REMARK 280 HEPES PH 7.5 SEEDING USED, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.11100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.19600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.17800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.19600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.11100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.17800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER X 2 REMARK 465 THR X 3 REMARK 465 ALA X 4 REMARK 465 LYS X 5 REMARK 465 ALA X 6 REMARK 465 PRO X 7 REMARK 465 THR X 8 REMARK 465 LEU X 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO X 10 CG CD REMARK 470 VAL X 22 CG1 CG2 REMARK 470 ASP X 25 CG OD1 OD2 REMARK 470 GLU X 30 CG CD OE1 OE2 REMARK 470 LEU X 59 CG CD1 CD2 REMARK 470 GLU X 63 CG CD OE1 OE2 REMARK 470 LYS X 66 CG CD CE NZ REMARK 470 GLN X 78 CG CD OE1 NE2 REMARK 470 GLU X 98 CG CD OE1 OE2 REMARK 470 ASP X 113 CG OD1 OD2 REMARK 470 GLU X 124 CG CD OE1 OE2 REMARK 470 GLU X 151 CG CD OE1 OE2 REMARK 470 LEU X 156 CG CD1 CD2 REMARK 470 ARG X 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS X 161 CG CD CE NZ REMARK 470 HIS X 214 CG ND1 CD2 CE1 NE2 REMARK 470 LYS X 219 CG CD CE NZ REMARK 470 LYS X 224 CG CD CE NZ REMARK 470 ARG X 262 CG CD NE CZ NH1 NH2 REMARK 470 LYS X 316 CG CD CE NZ REMARK 470 GLN X 357 CG CD OE1 NE2 REMARK 470 GLU X 375 CG CD OE1 OE2 REMARK 470 GLN X 397 CG CD OE1 NE2 REMARK 470 GLU X 400 CG CD OE1 OE2 REMARK 470 LYS X 415 CG CD CE NZ REMARK 470 GLU X 440 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 630 O HOH X 672 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO X 10 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 18 -167.41 -169.68 REMARK 500 ASP X 25 -87.44 -76.04 REMARK 500 ASP X 108 -111.43 60.86 REMARK 500 ASN X 128 -117.54 52.80 REMARK 500 ILE X 187 -29.65 -150.35 REMARK 500 ASN X 212 -101.76 -86.12 REMARK 500 TRP X 336 -154.50 -146.92 REMARK 500 ASP X 341 102.48 -166.39 REMARK 500 GLU X 400 -84.24 159.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 108 OD1 REMARK 620 2 ASP X 108 OD2 55.0 REMARK 620 3 ASP X 242 OD2 72.8 114.9 REMARK 620 4 ASP X 246 OD1 157.9 134.4 108.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K35 RELATED DB: PDB REMARK 900 APO ENZYME REMARK 900 RELATED ID: 1K2Y RELATED DB: PDB REMARK 900 S108A MUTANT REMARK 900 RELATED ID: 1PCJ RELATED DB: PDB REMARK 900 PMM/PGM WITH MANNOSE 1-PHOSPHATE BOUND REMARK 900 RELATED ID: 1PCM RELATED DB: PDB REMARK 900 PMM/PGM WITH MANNOSE 6-PHOSPHATE BOUND REMARK 900 RELATED ID: 1P5D RELATED DB: PDB REMARK 900 PMM/PGM WITH GLUCOSE 1-PHOSPHATE BOUND REMARK 900 RELATED ID: 1P5G RELATED DB: PDB REMARK 900 PMM/PGM WITH GLUCOSE 6-PHOSPHATE BOUND REMARK 900 RELATED ID: 2FKF RELATED DB: PDB REMARK 900 PMM/PGM WITH ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE BOUND DBREF 2FKM X 2 463 UNP P26276 ALGC_PSEAE 1 462 SEQADV 2FKM ASP X 108 UNP P26276 SER 107 ENGINEERED MUTATION SEQRES 1 X 462 SER THR ALA LYS ALA PRO THR LEU PRO ALA SER ILE PHE SEQRES 2 X 462 ARG ALA TYR ASP ILE ARG GLY VAL VAL GLY ASP THR LEU SEQRES 3 X 462 THR ALA GLU THR ALA TYR TRP ILE GLY ARG ALA ILE GLY SEQRES 4 X 462 SER GLU SER LEU ALA ARG GLY GLU PRO CYS VAL ALA VAL SEQRES 5 X 462 GLY ARG ASP GLY ARG LEU SER GLY PRO GLU LEU VAL LYS SEQRES 6 X 462 GLN LEU ILE GLN GLY LEU VAL ASP CYS GLY CYS GLN VAL SEQRES 7 X 462 SER ASP VAL GLY MET VAL PRO THR PRO VAL LEU TYR TYR SEQRES 8 X 462 ALA ALA ASN VAL LEU GLU GLY LYS SER GLY VAL MET LEU SEQRES 9 X 462 THR GLY ASP HIS ASN PRO PRO ASP TYR ASN GLY PHE LYS SEQRES 10 X 462 ILE VAL VAL ALA GLY GLU THR LEU ALA ASN GLU GLN ILE SEQRES 11 X 462 GLN ALA LEU ARG GLU ARG ILE GLU LYS ASN ASP LEU ALA SEQRES 12 X 462 SER GLY VAL GLY SER VAL GLU GLN VAL ASP ILE LEU PRO SEQRES 13 X 462 ARG TYR PHE LYS GLN ILE ARG ASP ASP ILE ALA MET ALA SEQRES 14 X 462 LYS PRO MET LYS VAL VAL VAL ASP CYS GLY ASN GLY VAL SEQRES 15 X 462 ALA GLY VAL ILE ALA PRO GLN LEU ILE GLU ALA LEU GLY SEQRES 16 X 462 CYS SER VAL ILE PRO LEU TYR CYS GLU VAL ASP GLY ASN SEQRES 17 X 462 PHE PRO ASN HIS HIS PRO ASP PRO GLY LYS PRO GLU ASN SEQRES 18 X 462 LEU LYS ASP LEU ILE ALA LYS VAL LYS ALA GLU ASN ALA SEQRES 19 X 462 ASP LEU GLY LEU ALA PHE ASP GLY ASP GLY ASP ARG VAL SEQRES 20 X 462 GLY VAL VAL THR ASN THR GLY THR ILE ILE TYR PRO ASP SEQRES 21 X 462 ARG LEU LEU MET LEU PHE ALA LYS ASP VAL VAL SER ARG SEQRES 22 X 462 ASN PRO GLY ALA ASP ILE ILE PHE ASP VAL LYS CYS THR SEQRES 23 X 462 ARG ARG LEU ILE ALA LEU ILE SER GLY TYR GLY GLY ARG SEQRES 24 X 462 PRO VAL MET TRP LYS THR GLY HIS SER LEU ILE LYS LYS SEQRES 25 X 462 LYS MET LYS GLU THR GLY ALA LEU LEU ALA GLY GLU MET SEQRES 26 X 462 SER GLY HIS VAL PHE PHE LYS GLU ARG TRP PHE GLY PHE SEQRES 27 X 462 ASP ASP GLY ILE TYR SER ALA ALA ARG LEU LEU GLU ILE SEQRES 28 X 462 LEU SER GLN ASP GLN ARG ASP SER GLU HIS VAL PHE SER SEQRES 29 X 462 ALA PHE PRO SER ASP ILE SER THR PRO GLU ILE ASN ILE SEQRES 30 X 462 THR VAL THR GLU ASP SER LYS PHE ALA ILE ILE GLU ALA SEQRES 31 X 462 LEU GLN ARG ASP ALA GLN TRP GLY GLU GLY ASN ILE THR SEQRES 32 X 462 THR LEU ASP GLY VAL ARG VAL ASP TYR PRO LYS GLY TRP SEQRES 33 X 462 GLY LEU VAL ARG ALA SER ASN THR THR PRO VAL LEU VAL SEQRES 34 X 462 LEU ARG PHE GLU ALA ASP THR GLU GLU GLU LEU GLU ARG SEQRES 35 X 462 ILE LYS THR VAL PHE ARG ASN GLN LEU LYS ALA VAL ASP SEQRES 36 X 462 SER SER LEU PRO VAL PRO PHE HET G16 X 464 20 HET ZN X 500 1 HETNAM G16 1,6-DI-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN G16 ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE; 1,6-DI-O-PHOSPHONO- HETSYN 2 G16 ALPHA-D-GLUCOSE; 1,6-DI-O-PHOSPHONO-D-GLUCOSE; 1,6-DI- HETSYN 3 G16 O-PHOSPHONO-GLUCOSE FORMUL 2 G16 C6 H13 O12 P2 1- FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *234(H2 O) HELIX 1 1 PRO X 10 PHE X 14 5 5 HELIX 2 2 THR X 28 ARG X 46 1 19 HELIX 3 3 SER X 60 ASP X 74 1 15 HELIX 4 4 PRO X 86 LEU X 97 1 12 HELIX 5 5 ASN X 128 ASN X 141 1 14 HELIX 6 6 ILE X 155 ILE X 167 1 13 HELIX 7 7 GLY X 182 VAL X 186 5 5 HELIX 8 8 ILE X 187 LEU X 195 1 9 HELIX 9 9 LYS X 219 ASN X 222 5 4 HELIX 10 10 LEU X 223 GLU X 233 1 11 HELIX 11 11 TYR X 259 ASN X 275 1 17 HELIX 12 12 ARG X 288 TYR X 297 1 10 HELIX 13 13 GLY X 307 GLY X 319 1 13 HELIX 14 14 ASP X 341 GLN X 355 1 15 HELIX 15 15 ASP X 359 ALA X 366 1 8 HELIX 16 16 SER X 384 ASP X 395 1 12 HELIX 17 17 THR X 437 ASP X 456 1 20 SHEET 1 A 3 ILE X 19 VAL X 22 0 SHEET 2 A 3 TYR X 114 VAL X 121 -1 O ASN X 115 N GLY X 21 SHEET 3 A 3 GLU X 124 THR X 125 -1 O GLU X 124 N VAL X 121 SHEET 1 B 6 ILE X 19 VAL X 22 0 SHEET 2 B 6 TYR X 114 VAL X 121 -1 O ASN X 115 N GLY X 21 SHEET 3 B 6 SER X 101 LEU X 105 -1 N GLY X 102 O VAL X 120 SHEET 4 B 6 CYS X 50 ARG X 55 1 N GLY X 54 O LEU X 105 SHEET 5 B 6 GLN X 78 MET X 84 1 O SER X 80 N VAL X 51 SHEET 6 B 6 SER X 149 GLN X 152 1 O SER X 149 N VAL X 79 SHEET 1 C 5 CYS X 197 LEU X 202 0 SHEET 2 C 5 MET X 173 ASP X 178 1 N VAL X 175 O SER X 198 SHEET 3 C 5 LEU X 237 PHE X 241 1 O LEU X 239 N ASP X 178 SHEET 4 C 5 VAL X 248 THR X 252 -1 O GLY X 249 N ALA X 240 SHEET 5 C 5 ILE X 257 ILE X 258 -1 O ILE X 258 N VAL X 250 SHEET 1 D 4 ARG X 300 TRP X 304 0 SHEET 2 D 4 ASP X 279 ASP X 283 1 N ILE X 280 O ARG X 300 SHEET 3 D 4 LEU X 322 GLY X 324 1 O LEU X 322 N ILE X 281 SHEET 4 D 4 VAL X 330 PHE X 332 -1 O PHE X 331 N ALA X 323 SHEET 1 E 3 ILE X 371 SER X 372 0 SHEET 2 E 3 VAL X 428 ALA X 435 -1 O ALA X 435 N ILE X 371 SHEET 3 E 3 ILE X 376 THR X 379 -1 N ILE X 376 O LEU X 431 SHEET 1 F 5 ILE X 371 SER X 372 0 SHEET 2 F 5 VAL X 428 ALA X 435 -1 O ALA X 435 N ILE X 371 SHEET 3 F 5 GLY X 416 ALA X 422 -1 N ARG X 421 O VAL X 430 SHEET 4 F 5 VAL X 409 ASP X 412 -1 N VAL X 409 O VAL X 420 SHEET 5 F 5 ASN X 402 THR X 404 -1 N THR X 404 O ARG X 410 LINK OD1 ASP X 108 ZN ZN X 500 1555 1555 2.56 LINK OD2 ASP X 108 ZN ZN X 500 1555 1555 2.16 LINK OD2 ASP X 242 ZN ZN X 500 1555 1555 2.05 LINK OD1 ASP X 246 ZN ZN X 500 1555 1555 2.00 CISPEP 1 GLY X 399 GLU X 400 0 -12.72 CRYST1 70.222 70.356 84.392 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011850 0.00000