HEADER FLUORESCENT PROTEIN 05-JAN-06 2FL1 TITLE CRYSTAL STRUCTURE OF RED FLUORESCENT PROTEIN FROM ZOANTHUS, ZRFP574, TITLE 2 AT 2.4A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RED FLUORESCENT PROTEIN ZOANRFP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOANTHUS SP.; SOURCE 3 ORGANISM_TAXID: 105402; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-30 KEYWDS RED FLUORESCENT PROTEIN, BUTTON POLYP, ZOANTHUS SP., CHROMOPHORE, KEYWDS 2 BETA-CAN FOLD, BETA BARREL, TIGHTLY PACKED TETRAMER, INTERSUBUNIT KEYWDS 3 INTERFACE, FLUORESCENT MARKER, EMISSION MAXIMUM 574NM, ZRFP574, KEYWDS 4 FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.PLETNEV,N.PLETNEVA,V.MARTYNOV,T.TIKHONOVA,B.POPOV,S.PLETNEV REVDAT 5 15-NOV-23 2FL1 1 LINK ATOM REVDAT 4 30-AUG-23 2FL1 1 REMARK REVDAT 3 20-OCT-21 2FL1 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2FL1 1 VERSN REVDAT 1 09-JAN-07 2FL1 0 JRNL AUTH N.PLETNEVA,S.PLETNEV,T.TIKHONOVA,V.POPOV,V.MARTYNOV, JRNL AUTH 2 V.PLETNEV JRNL TITL STRUCTURE OF A RED FLUORESCENT PROTEIN FROM ZOANTHUS, JRNL TITL 2 ZRFP574, REVEALS A NOVEL CHROMOPHORE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 527 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16627946 JRNL DOI 10.1107/S0907444906007852 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 40878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RFREE THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REFLECTIONS REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2048 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.540 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CROSS VALIDATED MAXIMUM LIKELIHOOD, REMARK 3 SIMULATED ANNEALING REFINEMENT REMARK 4 REMARK 4 2FL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1XA9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULPHATE, 0.2M K/NA REMARK 280 TARTRATE, 0.1M NA CITRATE, PH 5.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.44250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.44250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.46350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.39950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.46350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.39950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.44250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.46350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.39950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.44250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.46350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.39950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO DIMERS IN ASSYMETRIC UNIT. REMARK 300 REMARK 300 THE TIGHTLY PACKED TETRAMERS GENERATED BY CRYSTALLOGRAPHIC REMARK 300 SYMMETRY OPERATIONS (-X-1, Y, -Z-1/2) AND (-Z, Y, -Z-1/2) . REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -114.92700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.44250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.44250 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 10 CG REMARK 480 ASN A 32 CG REMARK 480 GLU A 77 CD OE1 REMARK 480 ARG A 116 CD REMARK 480 LYS A 162 CE NZ REMARK 480 LYS A 213 CG CD CE NZ REMARK 480 ASP B 10 CG REMARK 480 ASN B 32 CG REMARK 480 GLU B 77 CD OE1 REMARK 480 ARG B 116 CD REMARK 480 LYS B 162 CE NZ REMARK 480 LYS B 213 CG CD CE NZ REMARK 480 ASP C 10 CG REMARK 480 ASN C 32 CG REMARK 480 GLU C 77 CD OE1 REMARK 480 ARG C 116 CD REMARK 480 LYS C 162 CE NZ REMARK 480 LYS C 213 CG CD CE NZ REMARK 480 ASP D 10 CG REMARK 480 ASN D 32 CG REMARK 480 GLU D 77 CD OE1 REMARK 480 ARG D 116 CD REMARK 480 LYS D 162 CE NZ REMARK 480 LYS D 213 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 211 -168.64 -124.39 REMARK 500 ARG A 227 -169.18 -107.92 REMARK 500 CYS B 21 114.43 -160.80 REMARK 500 ALA B 63 6.79 -59.31 REMARK 500 ARG B 70 3.93 -65.79 REMARK 500 ASP B 173 31.67 -93.42 REMARK 500 ARG B 209 38.15 -140.61 REMARK 500 ARG B 227 -168.01 -100.02 REMARK 500 PHE C 27 146.77 -172.23 REMARK 500 ALA C 63 5.87 -66.34 REMARK 500 ARG C 70 4.08 -69.35 REMARK 500 ARG C 227 -168.88 -103.47 REMARK 500 HIS D 6 7.07 58.98 REMARK 500 ASP D 11 91.56 -160.79 REMARK 500 ALA D 63 3.83 -67.26 REMARK 500 ASP D 81 73.15 -107.27 REMARK 500 GLU D 190 109.30 -36.54 REMARK 500 SER D 226 -177.29 -178.96 REMARK 500 ARG D 227 -167.98 -121.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 650 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 651 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 751 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 752 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 850 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XA9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HOMOLOGOUS YELLOW FLUORESCENT PROTEIN ZYFP538. REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHROMOPHORE (XYG 66) IS FORMED AUTOCATALYTICALLY REMARK 999 FROM ASP-TYR-GLY (ACCORDING TO NUCLEOTIDE SEQUENCE) REMARK 999 AFTER DECARBOXYLATION OF ASP AND OTHER DEPROTONATION REMARK 999 PROCESSES. DBREF 2FL1 A 4 231 UNP Q8T4U4 Q8T4U4_9CNID 4 231 DBREF 2FL1 B 4 231 UNP Q8T4U4 Q8T4U4_9CNID 4 231 DBREF 2FL1 C 4 231 UNP Q8T4U4 Q8T4U4_9CNID 4 231 DBREF 2FL1 D 4 231 UNP Q8T4U4 Q8T4U4_9CNID 4 231 SEQADV 2FL1 ALA A 5 UNP Q8T4U4 LYS 5 ENGINEERED MUTATION SEQADV 2FL1 XYG A 66 UNP Q8T4U4 ASP 66 SEE REMARK 999 SEQADV 2FL1 XYG A 66 UNP Q8T4U4 TYR 67 SEE REMARK 999 SEQADV 2FL1 XYG A 66 UNP Q8T4U4 GLY 68 SEE REMARK 999 SEQADV 2FL1 ALA B 5 UNP Q8T4U4 LYS 5 ENGINEERED MUTATION SEQADV 2FL1 XYG B 66 UNP Q8T4U4 ASP 66 SEE REMARK 999 SEQADV 2FL1 XYG B 66 UNP Q8T4U4 TYR 67 SEE REMARK 999 SEQADV 2FL1 XYG B 66 UNP Q8T4U4 GLY 68 SEE REMARK 999 SEQADV 2FL1 ALA C 5 UNP Q8T4U4 LYS 5 ENGINEERED MUTATION SEQADV 2FL1 XYG C 66 UNP Q8T4U4 ASP 66 SEE REMARK 999 SEQADV 2FL1 XYG C 66 UNP Q8T4U4 TYR 67 SEE REMARK 999 SEQADV 2FL1 XYG C 66 UNP Q8T4U4 GLY 68 SEE REMARK 999 SEQADV 2FL1 ALA D 5 UNP Q8T4U4 LYS 5 ENGINEERED MUTATION SEQADV 2FL1 XYG D 66 UNP Q8T4U4 ASP 66 SEE REMARK 999 SEQADV 2FL1 XYG D 66 UNP Q8T4U4 TYR 67 SEE REMARK 999 SEQADV 2FL1 XYG D 66 UNP Q8T4U4 GLY 68 SEE REMARK 999 SEQRES 1 A 226 SER ALA HIS GLY LEU THR ASP ASP MET THR MET HIS PHE SEQRES 2 A 226 ARG MET GLU GLY CYS VAL ASP GLY HIS LYS PHE VAL ILE SEQRES 3 A 226 GLU GLY ASN GLY ASN GLY ASN PRO PHE LYS GLY LYS GLN SEQRES 4 A 226 PHE ILE ASN LEU CYS VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 A 226 PHE SER GLU ASP ILE LEU SER ALA ALA PHE XYG ASN ARG SEQRES 6 A 226 LEU PHE THR GLU TYR PRO GLU GLY ILE VAL ASP TYR PHE SEQRES 7 A 226 LYS ASN SER CYS PRO ALA GLY TYR THR TRP HIS ARG SER SEQRES 8 A 226 PHE ARG PHE GLU ASP GLY ALA VAL CYS ILE CYS SER ALA SEQRES 9 A 226 ASP ILE THR VAL ASN VAL ARG GLU ASN CYS ILE TYR HIS SEQRES 10 A 226 GLU SER THR PHE TYR GLY VAL ASN PHE PRO ALA ASP GLY SEQRES 11 A 226 PRO VAL MET LYS LYS MET THR THR ASN TRP GLU PRO SER SEQRES 12 A 226 CYS GLU LYS ILE ILE PRO ILE ASN SER GLN LYS ILE LEU SEQRES 13 A 226 LYS GLY ASP VAL SER MET TYR LEU LEU LEU LYS ASP GLY SEQRES 14 A 226 GLY ARG TYR ARG CYS GLN PHE ASP THR ILE TYR LYS ALA SEQRES 15 A 226 LYS THR GLU PRO LYS GLU MET PRO ASP TRP HIS PHE ILE SEQRES 16 A 226 GLN HIS LYS LEU ASN ARG GLU ASP ARG SER ASP ALA LYS SEQRES 17 A 226 ASN GLN LYS TRP GLN LEU ILE GLU HIS ALA ILE ALA SER SEQRES 18 A 226 ARG SER ALA LEU PRO SEQRES 1 B 226 SER ALA HIS GLY LEU THR ASP ASP MET THR MET HIS PHE SEQRES 2 B 226 ARG MET GLU GLY CYS VAL ASP GLY HIS LYS PHE VAL ILE SEQRES 3 B 226 GLU GLY ASN GLY ASN GLY ASN PRO PHE LYS GLY LYS GLN SEQRES 4 B 226 PHE ILE ASN LEU CYS VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 B 226 PHE SER GLU ASP ILE LEU SER ALA ALA PHE XYG ASN ARG SEQRES 6 B 226 LEU PHE THR GLU TYR PRO GLU GLY ILE VAL ASP TYR PHE SEQRES 7 B 226 LYS ASN SER CYS PRO ALA GLY TYR THR TRP HIS ARG SER SEQRES 8 B 226 PHE ARG PHE GLU ASP GLY ALA VAL CYS ILE CYS SER ALA SEQRES 9 B 226 ASP ILE THR VAL ASN VAL ARG GLU ASN CYS ILE TYR HIS SEQRES 10 B 226 GLU SER THR PHE TYR GLY VAL ASN PHE PRO ALA ASP GLY SEQRES 11 B 226 PRO VAL MET LYS LYS MET THR THR ASN TRP GLU PRO SER SEQRES 12 B 226 CYS GLU LYS ILE ILE PRO ILE ASN SER GLN LYS ILE LEU SEQRES 13 B 226 LYS GLY ASP VAL SER MET TYR LEU LEU LEU LYS ASP GLY SEQRES 14 B 226 GLY ARG TYR ARG CYS GLN PHE ASP THR ILE TYR LYS ALA SEQRES 15 B 226 LYS THR GLU PRO LYS GLU MET PRO ASP TRP HIS PHE ILE SEQRES 16 B 226 GLN HIS LYS LEU ASN ARG GLU ASP ARG SER ASP ALA LYS SEQRES 17 B 226 ASN GLN LYS TRP GLN LEU ILE GLU HIS ALA ILE ALA SER SEQRES 18 B 226 ARG SER ALA LEU PRO SEQRES 1 C 226 SER ALA HIS GLY LEU THR ASP ASP MET THR MET HIS PHE SEQRES 2 C 226 ARG MET GLU GLY CYS VAL ASP GLY HIS LYS PHE VAL ILE SEQRES 3 C 226 GLU GLY ASN GLY ASN GLY ASN PRO PHE LYS GLY LYS GLN SEQRES 4 C 226 PHE ILE ASN LEU CYS VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 C 226 PHE SER GLU ASP ILE LEU SER ALA ALA PHE XYG ASN ARG SEQRES 6 C 226 LEU PHE THR GLU TYR PRO GLU GLY ILE VAL ASP TYR PHE SEQRES 7 C 226 LYS ASN SER CYS PRO ALA GLY TYR THR TRP HIS ARG SER SEQRES 8 C 226 PHE ARG PHE GLU ASP GLY ALA VAL CYS ILE CYS SER ALA SEQRES 9 C 226 ASP ILE THR VAL ASN VAL ARG GLU ASN CYS ILE TYR HIS SEQRES 10 C 226 GLU SER THR PHE TYR GLY VAL ASN PHE PRO ALA ASP GLY SEQRES 11 C 226 PRO VAL MET LYS LYS MET THR THR ASN TRP GLU PRO SER SEQRES 12 C 226 CYS GLU LYS ILE ILE PRO ILE ASN SER GLN LYS ILE LEU SEQRES 13 C 226 LYS GLY ASP VAL SER MET TYR LEU LEU LEU LYS ASP GLY SEQRES 14 C 226 GLY ARG TYR ARG CYS GLN PHE ASP THR ILE TYR LYS ALA SEQRES 15 C 226 LYS THR GLU PRO LYS GLU MET PRO ASP TRP HIS PHE ILE SEQRES 16 C 226 GLN HIS LYS LEU ASN ARG GLU ASP ARG SER ASP ALA LYS SEQRES 17 C 226 ASN GLN LYS TRP GLN LEU ILE GLU HIS ALA ILE ALA SER SEQRES 18 C 226 ARG SER ALA LEU PRO SEQRES 1 D 226 SER ALA HIS GLY LEU THR ASP ASP MET THR MET HIS PHE SEQRES 2 D 226 ARG MET GLU GLY CYS VAL ASP GLY HIS LYS PHE VAL ILE SEQRES 3 D 226 GLU GLY ASN GLY ASN GLY ASN PRO PHE LYS GLY LYS GLN SEQRES 4 D 226 PHE ILE ASN LEU CYS VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 D 226 PHE SER GLU ASP ILE LEU SER ALA ALA PHE XYG ASN ARG SEQRES 6 D 226 LEU PHE THR GLU TYR PRO GLU GLY ILE VAL ASP TYR PHE SEQRES 7 D 226 LYS ASN SER CYS PRO ALA GLY TYR THR TRP HIS ARG SER SEQRES 8 D 226 PHE ARG PHE GLU ASP GLY ALA VAL CYS ILE CYS SER ALA SEQRES 9 D 226 ASP ILE THR VAL ASN VAL ARG GLU ASN CYS ILE TYR HIS SEQRES 10 D 226 GLU SER THR PHE TYR GLY VAL ASN PHE PRO ALA ASP GLY SEQRES 11 D 226 PRO VAL MET LYS LYS MET THR THR ASN TRP GLU PRO SER SEQRES 12 D 226 CYS GLU LYS ILE ILE PRO ILE ASN SER GLN LYS ILE LEU SEQRES 13 D 226 LYS GLY ASP VAL SER MET TYR LEU LEU LEU LYS ASP GLY SEQRES 14 D 226 GLY ARG TYR ARG CYS GLN PHE ASP THR ILE TYR LYS ALA SEQRES 15 D 226 LYS THR GLU PRO LYS GLU MET PRO ASP TRP HIS PHE ILE SEQRES 16 D 226 GLN HIS LYS LEU ASN ARG GLU ASP ARG SER ASP ALA LYS SEQRES 17 D 226 ASN GLN LYS TRP GLN LEU ILE GLU HIS ALA ILE ALA SER SEQRES 18 D 226 ARG SER ALA LEU PRO MODRES 2FL1 XYG A 66 ASP MODRES 2FL1 XYG A 66 TYR MODRES 2FL1 XYG A 66 GLY MODRES 2FL1 XYG B 66 ASP MODRES 2FL1 XYG B 66 TYR MODRES 2FL1 XYG B 66 GLY MODRES 2FL1 XYG C 66 ASP MODRES 2FL1 XYG C 66 TYR MODRES 2FL1 XYG C 66 GLY MODRES 2FL1 XYG D 66 ASP MODRES 2FL1 XYG D 66 TYR MODRES 2FL1 XYG D 66 GLY HET XYG A 66 20 HET XYG B 66 20 HET XYG C 66 20 HET XYG D 66 20 HET SO4 A 550 5 HET SO4 A 551 5 HET SO4 A 552 5 HET SO4 B 650 5 HET SO4 B 651 5 HET SO4 C 750 5 HET SO4 C 751 5 HET SO4 C 752 5 HET SO4 D 850 5 HETNAM XYG [(4Z)-2-[(1Z)-ETHANIMIDOYL]-4-(4-HYDROXYBENZYLIDENE)-5- HETNAM 2 XYG OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID HETNAM SO4 SULFATE ION HETSYN XYG CHROMOPHORE (DECARBOXYLATED ASP-TYR-GLY) FORMUL 1 XYG 4(C14 H13 N3 O4) FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 HOH *412(H2 O) HELIX 1 1 PRO A 37 LYS A 39 5 3 HELIX 2 2 SER A 57 PHE A 65 5 9 HELIX 3 3 ASP A 81 SER A 86 1 6 HELIX 4 4 PRO B 37 LYS B 39 5 3 HELIX 5 5 SER B 57 PHE B 65 5 9 HELIX 6 6 ASP B 81 SER B 86 1 6 HELIX 7 7 VAL B 115 GLU B 117 5 3 HELIX 8 8 GLY B 135 LYS B 140 1 6 HELIX 9 9 PRO C 37 LYS C 39 5 3 HELIX 10 10 SER C 57 PHE C 65 5 9 HELIX 11 11 ASP C 81 SER C 86 1 6 HELIX 12 12 ASN C 156 LYS C 159 5 4 HELIX 13 13 SER D 4 LEU D 8 5 5 HELIX 14 14 SER D 57 PHE D 65 5 9 HELIX 15 15 ASP D 81 SER D 86 1 6 SHEET 1 A13 THR A 142 TRP A 145 0 SHEET 2 A13 ILE A 160 LEU A 171 -1 O LEU A 170 N ASN A 144 SHEET 3 A13 ARG A 176 ALA A 187 -1 O THR A 183 N GLY A 163 SHEET 4 A13 TYR A 91 PHE A 99 -1 N THR A 92 O LYS A 186 SHEET 5 A13 VAL A 104 ASN A 114 -1 O CYS A 105 N PHE A 97 SHEET 6 A13 CYS A 119 VAL A 129 -1 O TYR A 121 N THR A 112 SHEET 7 A13 MET A 12 VAL A 22 1 N HIS A 15 O HIS A 122 SHEET 8 A13 HIS A 25 ASN A 36 -1 O GLY A 31 N PHE A 16 SHEET 9 A13 LYS A 41 GLU A 50 -1 O PHE A 43 N ASN A 34 SHEET 10 A13 LYS A 216 SER A 226 -1 O LEU A 219 N ILE A 44 SHEET 11 A13 HIS A 198 ASP A 208 -1 N PHE A 199 O SER A 226 SHEET 12 A13 SER A 148 ILE A 155 -1 N ILE A 152 O HIS A 198 SHEET 13 A13 ILE A 160 LEU A 171 -1 O LYS A 162 N ILE A 153 SHEET 1 B13 THR B 142 TRP B 145 0 SHEET 2 B13 ILE B 160 LEU B 171 -1 O LEU B 170 N ASN B 144 SHEET 3 B13 ARG B 176 ALA B 187 -1 O THR B 183 N GLY B 163 SHEET 4 B13 TYR B 91 PHE B 99 -1 N THR B 92 O LYS B 186 SHEET 5 B13 VAL B 104 ASN B 114 -1 O CYS B 105 N PHE B 97 SHEET 6 B13 CYS B 119 VAL B 129 -1 O TYR B 121 N THR B 112 SHEET 7 B13 MET B 12 VAL B 22 1 N HIS B 15 O HIS B 122 SHEET 8 B13 HIS B 25 ASN B 36 -1 O GLY B 33 N MET B 14 SHEET 9 B13 LYS B 41 GLU B 50 -1 O PHE B 43 N ASN B 34 SHEET 10 B13 LYS B 216 SER B 226 -1 O LEU B 219 N ILE B 44 SHEET 11 B13 HIS B 198 ASP B 208 -1 N PHE B 199 O SER B 226 SHEET 12 B13 SER B 148 ILE B 155 -1 N ILE B 152 O HIS B 198 SHEET 13 B13 ILE B 160 LEU B 171 -1 O LYS B 162 N ILE B 153 SHEET 1 C13 THR C 142 TRP C 145 0 SHEET 2 C13 ILE C 160 LEU C 171 -1 O LEU C 170 N ASN C 144 SHEET 3 C13 ARG C 176 ALA C 187 -1 O CYS C 179 N MET C 167 SHEET 4 C13 TYR C 91 PHE C 99 -1 N THR C 92 O LYS C 186 SHEET 5 C13 VAL C 104 ASN C 114 -1 O CYS C 105 N PHE C 97 SHEET 6 C13 CYS C 119 VAL C 129 -1 O CYS C 119 N ASN C 114 SHEET 7 C13 MET C 12 VAL C 22 1 N HIS C 15 O HIS C 122 SHEET 8 C13 HIS C 25 ASN C 36 -1 O ILE C 29 N MET C 18 SHEET 9 C13 LYS C 41 GLU C 50 -1 O PHE C 43 N ASN C 34 SHEET 10 C13 LYS C 216 SER C 226 -1 O LEU C 219 N ILE C 44 SHEET 11 C13 HIS C 198 ASP C 208 -1 N PHE C 199 O SER C 226 SHEET 12 C13 SER C 148 ILE C 155 -1 N GLU C 150 O ILE C 200 SHEET 13 C13 ILE C 160 LEU C 171 -1 O LYS C 162 N ILE C 153 SHEET 1 D13 THR D 142 TRP D 145 0 SHEET 2 D13 ILE D 160 LEU D 171 -1 O LEU D 170 N ASN D 144 SHEET 3 D13 ARG D 176 ALA D 187 -1 O CYS D 179 N MET D 167 SHEET 4 D13 TYR D 91 ARG D 98 -1 N THR D 92 O LYS D 186 SHEET 5 D13 VAL D 104 ASN D 114 -1 O ILE D 111 N TYR D 91 SHEET 6 D13 CYS D 119 VAL D 129 -1 O TYR D 121 N THR D 112 SHEET 7 D13 MET D 12 VAL D 22 1 N ARG D 17 O SER D 124 SHEET 8 D13 HIS D 25 ASN D 36 -1 O GLY D 31 N PHE D 16 SHEET 9 D13 LYS D 41 GLU D 50 -1 O PHE D 43 N ASN D 34 SHEET 10 D13 LYS D 216 SER D 226 -1 O LEU D 219 N ILE D 44 SHEET 11 D13 HIS D 198 ASP D 208 -1 N PHE D 199 O SER D 226 SHEET 12 D13 SER D 148 ILE D 155 -1 N ILE D 152 O HIS D 198 SHEET 13 D13 ILE D 160 LEU D 171 -1 O ILE D 160 N ILE D 155 LINK C PHE A 65 N1 XYG A 66 1555 1555 1.32 LINK C3 XYG A 66 N ASN A 69 1555 1555 1.36 LINK C PHE B 65 N1 XYG B 66 1555 1555 1.29 LINK C3 XYG B 66 N ASN B 69 1555 1555 1.32 LINK C PHE C 65 N1 XYG C 66 1555 1555 1.29 LINK C3 XYG C 66 N ASN C 69 1555 1555 1.33 LINK C PHE D 65 N1 XYG D 66 1555 1555 1.28 LINK C3 XYG D 66 N ASN D 69 1555 1555 1.33 CISPEP 1 GLY A 52 PRO A 53 0 -0.34 CISPEP 2 CYS A 87 PRO A 88 0 0.22 CISPEP 3 GLY B 52 PRO B 53 0 -0.19 CISPEP 4 CYS B 87 PRO B 88 0 0.17 CISPEP 5 GLY C 52 PRO C 53 0 -0.37 CISPEP 6 CYS C 87 PRO C 88 0 0.26 CISPEP 7 GLY D 52 PRO D 53 0 -0.34 CISPEP 8 CYS D 87 PRO D 88 0 0.09 SITE 1 AC1 5 TRP A 197 LYS A 203 ARG A 227 SER A 228 SITE 2 AC1 5 HOH A 568 SITE 1 AC2 4 ASN A 36 LYS A 39 LYS A 41 HOH A 670 SITE 1 AC3 6 LYS A 172 ARG A 206 HOH A 584 HOH A 635 SITE 2 AC3 6 HOH A 647 HOH A 673 SITE 1 AC4 6 TRP B 197 LYS B 203 ARG B 227 SER B 228 SITE 2 AC4 6 HOH B 706 HOH B 722 SITE 1 AC5 3 ASN B 36 LYS B 39 LYS B 41 SITE 1 AC6 5 TRP C 197 LYS C 203 ARG C 227 SER C 228 SITE 2 AC6 5 LEU C 230 SITE 1 AC7 3 ASN C 36 LYS C 39 LYS C 41 SITE 1 AC8 5 THR C 142 LYS C 172 ARG C 206 ASP C 208 SITE 2 AC8 5 HOH C 864 SITE 1 AC9 7 PRO D 147 TRP D 197 LYS D 203 ARG D 227 SITE 2 AC9 7 SER D 228 LEU D 230 HOH D 873 CRYST1 114.927 146.799 122.885 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008701 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008138 0.00000