data_2FLE # _entry.id 2FLE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FLE pdb_00002fle 10.2210/pdb2fle/pdb RCSB RCSB036017 ? ? WWPDB D_1000036017 ? ? # _pdbx_database_status.entry_id 2FLE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-01-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clemente, J.C.' 1 'Robbins, A.' 2 'Dunn, B.M.' 3 'Sussman, F.' 4 # _citation.id primary _citation.title ;Design, synthesis, evaluation, and crystallographic-based structural studies of HIV-1 protease inhibitors with reduced response to the V82A mutation. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 51 _citation.page_first 852 _citation.page_last 860 _citation.year 2008 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18215016 _citation.pdbx_database_id_DOI 10.1021/jm701170f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clemente, J.C.' 1 ? primary 'Robbins, A.' 2 ? primary 'Grana, P.' 3 ? primary 'Paleo, M.R.' 4 ? primary 'Correa, J.F.' 5 ? primary 'Villaverde, M.C.' 6 ? primary 'Sardina, F.J.' 7 ? primary 'Govindasamy, L.' 8 ? primary 'Agbandje-McKenna, M.' 9 ? primary 'McKenna, R.' 10 ? primary 'Dunn, B.M.' 11 ? primary 'Sussman, F.' 12 ? # _cell.entry_id 2FLE _cell.length_a 62.195 _cell.length_b 62.195 _cell.length_c 82.752 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FLE _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'pol protein' 10747.688 2 ? V82A 'HIV-1 protease' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn ;(2S,2'S)-N,N'-[(2S,3S,4S,5S)-1-CYCLOHEXYL-3,4-DIHYDROXY-6-PHENYLHEXANE-2,5-DIYL]BIS[3-METHYL-2-({[METHYL(PYRIDIN-2-YLMETHYL)AMINO]CARBONYL}AMINO)BUTANAMIDE] ; 801.029 1 ? ? ? ? 4 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PANIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PANIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 GLN n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 LYS n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 ALA n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Star DE3 pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET23a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAO73975 _struct_ref.pdbx_db_accession 33304696 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 7 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2FLE A 1 ? 99 ? 33304696 7 ? 105 ? 1 99 2 1 2FLE B 1 ? 99 ? 33304696 7 ? 105 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FLE ALA A 82 ? GB 33304696 VAL 88 'engineered mutation' 82 1 2 2FLE ALA B 82 ? GB 33304696 VAL 88 'engineered mutation' 82 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AI non-polymer . ;(2S,2'S)-N,N'-[(2S,3S,4S,5S)-1-CYCLOHEXYL-3,4-DIHYDROXY-6-PHENYLHEXANE-2,5-DIYL]BIS[3-METHYL-2-({[METHYL(PYRIDIN-2-YLMETHYL)AMINO]CARBONYL}AMINO)BUTANAMIDE] ; ? 'C44 H64 N8 O6' 801.029 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2FLE _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.1 M Sodium Cacodylate pH 6.5, 0.2 M Magnesium Acetate tetrahydrate, 20% Polyethylene Glycol 8000. (Hampton Research Crystal Screen Solution #18), VAPOR DIFFUSION, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-06-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 2FLE _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.90 _reflns.number_obs 14371 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_chi_squared 1.240 _reflns.pdbx_redundancy 5.300 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 22.6 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.number_all 14460 _reflns.B_iso_Wilson_estimate 36.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_low 1.97 _reflns_shell.d_res_high 1.90 _reflns_shell.number_unique_all 1424 _reflns_shell.percent_possible_all 100.000 _reflns_shell.Rmerge_I_obs 0.486 _reflns_shell.pdbx_chi_squared 0.993 _reflns_shell.pdbx_redundancy 5.300 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 19.770 _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF 481957.719 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 90.000 _refine.ls_number_reflns_obs 12939 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.2505 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 652 _refine.ls_R_factor_R_free_error 0.009 _refine.B_iso_mean 33.500 _refine.solvent_model_param_bsol 57.034 _refine.solvent_model_param_ksol 0.409 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 0.300 _refine.aniso_B[2][2] 0.300 _refine.aniso_B[3][3] -0.600 _refine.aniso_B[1][2] 0.610 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.entry_id 2FLE _refine.pdbx_ls_sigma_I 2 _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.207 _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1hxw _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.occupancy_max ? _refine.occupancy_min ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.Luzzati_coordinate_error_obs 0.220 _refine_analyze.Luzzati_sigma_a_obs 0.140 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.270 _refine_analyze.Luzzati_sigma_a_free 0.190 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2FLE _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1508 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 1649 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 19.770 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.009 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.500 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 25.800 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 0.870 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.910 ? 1.500 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.780 ? 2.000 'X-RAY DIFFRACTION' ? c_scbond_it ? 3.180 ? 2.000 'X-RAY DIFFRACTION' ? c_scangle_it ? 4.620 ? 2.500 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 2.020 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 75.800 _refine_ls_shell.number_reflns_R_work 1724 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.percent_reflns_R_free 4.900 _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1812 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein.top protein_rep.param 'X-RAY DIFFRACTION' 2 water.top water_rep.param 'X-RAY DIFFRACTION' 3 INH1_sync2.top INH1_sync2.param 'X-RAY DIFFRACTION' 4 GOL.top GOL.param 'X-RAY DIFFRACTION' # _struct.entry_id 2FLE _struct.title 'Structural analysis of asymmetric inhibitor bound to the HIV-1 Protease V82A mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FLE _struct_keywords.pdbx_keywords 'hydrolase/hydrolase inhibitor' _struct_keywords.text 'HIV-1 protease, inhibitor, resistance, induced fit, hydrolase-hydrolase inhibitor COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The asymetric unit consist of the HIV protease homodimer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 HELX_P HELX_P4 4 GLN B 92 ? GLY B 94 ? GLN B 92 GLY B 94 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? LEU B 33 ? VAL B 32 LEU B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ARG A 57 ? N ARG A 57 O VAL A 77 ? O VAL A 77 B 3 4 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 45 ? N LYS B 45 O VAL B 56 ? O VAL B 56 C 2 3 N TYR B 59 ? N TYR B 59 O VAL B 75 ? O VAL B 75 C 3 4 O LEU B 76 ? O LEU B 76 N LEU B 33 ? N LEU B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B AI 845 ? 25 'BINDING SITE FOR RESIDUE AI B 845' AC2 Software A GOL 300 ? 5 'BINDING SITE FOR RESIDUE GOL A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 25 LEU A 23 ? LEU A 23 . ? 1_555 ? 3 AC1 25 ASP A 25 ? ASP A 25 . ? 1_555 ? 4 AC1 25 GLY A 27 ? GLY A 27 . ? 1_555 ? 5 AC1 25 ALA A 28 ? ALA A 28 . ? 1_555 ? 6 AC1 25 ASP A 29 ? ASP A 29 . ? 1_555 ? 7 AC1 25 ILE A 47 ? ILE A 47 . ? 1_555 ? 8 AC1 25 GLY A 48 ? GLY A 48 . ? 1_555 ? 9 AC1 25 GLY A 49 ? GLY A 49 . ? 1_555 ? 10 AC1 25 ILE A 50 ? ILE A 50 . ? 1_555 ? 11 AC1 25 ALA A 82 ? ALA A 82 . ? 1_555 ? 12 AC1 25 ILE A 84 ? ILE A 84 . ? 1_555 ? 13 AC1 25 ARG B 8 ? ARG B 8 . ? 1_555 ? 14 AC1 25 LEU B 23 ? LEU B 23 . ? 1_555 ? 15 AC1 25 ASP B 25 ? ASP B 25 . ? 1_555 ? 16 AC1 25 GLY B 27 ? GLY B 27 . ? 1_555 ? 17 AC1 25 ALA B 28 ? ALA B 28 . ? 1_555 ? 18 AC1 25 ASP B 29 ? ASP B 29 . ? 1_555 ? 19 AC1 25 ILE B 47 ? ILE B 47 . ? 1_555 ? 20 AC1 25 GLY B 48 ? GLY B 48 . ? 1_555 ? 21 AC1 25 GLY B 49 ? GLY B 49 . ? 1_555 ? 22 AC1 25 ILE B 50 ? ILE B 50 . ? 1_555 ? 23 AC1 25 ALA B 82 ? ALA B 82 . ? 1_555 ? 24 AC1 25 ILE B 84 ? ILE B 84 . ? 1_555 ? 25 AC1 25 HOH F . ? HOH B 846 . ? 1_555 ? 26 AC2 5 ASP A 29 ? ASP A 29 . ? 1_555 ? 27 AC2 5 ARG A 87 ? ARG A 87 . ? 1_555 ? 28 AC2 5 ASN A 88 ? ASN A 88 . ? 1_555 ? 29 AC2 5 HOH E . ? HOH A 330 . ? 1_555 ? 30 AC2 5 TRP B 6 ? TRP B 6 . ? 1_555 ? # _database_PDB_matrix.entry_id 2FLE _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FLE _atom_sites.fract_transf_matrix[1][1] 0.016078 _atom_sites.fract_transf_matrix[1][2] 0.009283 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012084 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 GLN 7 7 7 GLN GLN B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CYS 67 67 67 CYS CYS B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 300 300 GOL GOL A . D 3 AI 1 845 845 AI AI B . E 4 HOH 1 301 1 HOH HOH A . E 4 HOH 2 302 3 HOH HOH A . E 4 HOH 3 303 4 HOH HOH A . E 4 HOH 4 304 10 HOH HOH A . E 4 HOH 5 305 11 HOH HOH A . E 4 HOH 6 306 13 HOH HOH A . E 4 HOH 7 307 14 HOH HOH A . E 4 HOH 8 308 16 HOH HOH A . E 4 HOH 9 309 18 HOH HOH A . E 4 HOH 10 310 19 HOH HOH A . E 4 HOH 11 311 20 HOH HOH A . E 4 HOH 12 312 24 HOH HOH A . E 4 HOH 13 313 25 HOH HOH A . E 4 HOH 14 314 26 HOH HOH A . E 4 HOH 15 315 30 HOH HOH A . E 4 HOH 16 316 32 HOH HOH A . E 4 HOH 17 317 34 HOH HOH A . E 4 HOH 18 318 35 HOH HOH A . E 4 HOH 19 319 40 HOH HOH A . E 4 HOH 20 320 43 HOH HOH A . E 4 HOH 21 321 44 HOH HOH A . E 4 HOH 22 322 45 HOH HOH A . E 4 HOH 23 323 46 HOH HOH A . E 4 HOH 24 324 50 HOH HOH A . E 4 HOH 25 325 51 HOH HOH A . E 4 HOH 26 326 52 HOH HOH A . E 4 HOH 27 327 55 HOH HOH A . E 4 HOH 28 328 58 HOH HOH A . E 4 HOH 29 329 70 HOH HOH A . E 4 HOH 30 330 74 HOH HOH A . E 4 HOH 31 331 76 HOH HOH A . E 4 HOH 32 332 78 HOH HOH A . E 4 HOH 33 333 80 HOH HOH A . E 4 HOH 34 334 81 HOH HOH A . E 4 HOH 35 335 82 HOH HOH A . E 4 HOH 36 336 83 HOH HOH A . E 4 HOH 37 337 85 HOH HOH A . E 4 HOH 38 338 89 HOH HOH A . F 4 HOH 1 846 2 HOH HOH B . F 4 HOH 2 847 5 HOH HOH B . F 4 HOH 3 848 6 HOH HOH B . F 4 HOH 4 849 7 HOH HOH B . F 4 HOH 5 850 8 HOH HOH B . F 4 HOH 6 851 9 HOH HOH B . F 4 HOH 7 852 12 HOH HOH B . F 4 HOH 8 853 15 HOH HOH B . F 4 HOH 9 854 17 HOH HOH B . F 4 HOH 10 855 21 HOH HOH B . F 4 HOH 11 856 22 HOH HOH B . F 4 HOH 12 857 23 HOH HOH B . F 4 HOH 13 858 27 HOH HOH B . F 4 HOH 14 859 28 HOH HOH B . F 4 HOH 15 860 29 HOH HOH B . F 4 HOH 16 861 31 HOH HOH B . F 4 HOH 17 862 33 HOH HOH B . F 4 HOH 18 863 36 HOH HOH B . F 4 HOH 19 864 37 HOH HOH B . F 4 HOH 20 865 38 HOH HOH B . F 4 HOH 21 866 41 HOH HOH B . F 4 HOH 22 867 42 HOH HOH B . F 4 HOH 23 868 47 HOH HOH B . F 4 HOH 24 869 48 HOH HOH B . F 4 HOH 25 870 49 HOH HOH B . F 4 HOH 26 871 53 HOH HOH B . F 4 HOH 27 872 56 HOH HOH B . F 4 HOH 28 873 57 HOH HOH B . F 4 HOH 29 874 59 HOH HOH B . F 4 HOH 30 875 60 HOH HOH B . F 4 HOH 31 876 71 HOH HOH B . F 4 HOH 32 877 72 HOH HOH B . F 4 HOH 33 878 73 HOH HOH B . F 4 HOH 34 879 75 HOH HOH B . F 4 HOH 35 880 77 HOH HOH B . F 4 HOH 36 881 79 HOH HOH B . F 4 HOH 37 882 84 HOH HOH B . F 4 HOH 38 883 87 HOH HOH B . F 4 HOH 39 884 88 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5630 ? 1 MORE -28 ? 1 'SSA (A^2)' 9060 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-16 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif 4 5 'Structure model' struct_site 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_struct_ref_seq_dif.details' 13 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 1.701 'OCT. 28, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 79 ? ? -73.13 44.57 2 1 PRO B 79 ? ? -70.79 46.93 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AI C4 C Y N 1 AI C14 C N S 2 AI C5 C Y N 3 AI C6 C Y N 4 AI C11 C N N 5 AI C7 C Y N 6 AI C8 C N N 7 AI C9 C N S 8 AI C10 C N N 9 AI C12 C N N 10 AI C13 C N N 11 AI N1 N N N 12 AI N2 N Y N 13 AI C3 C Y N 14 AI N3 N N N 15 AI O1 O N N 16 AI C1 C N N 17 AI C2 C N N 18 AI O2 O N N 19 AI N4 N N N 20 AI C15 C N N 21 AI C16 C Y N 22 AI C17 C Y N 23 AI C18 C Y N 24 AI C19 C Y N 25 AI C20 C Y N 26 AI C21 C Y N 27 AI C22 C N S 28 AI O3 O N N 29 AI C23 C N S 30 AI O4 O N N 31 AI C24 C N S 32 AI C25 C N N 33 AI C26 C N N 34 AI C27 C N N 35 AI C28 C N N 36 AI C29 C N N 37 AI C30 C N N 38 AI C31 C N N 39 AI N5 N N N 40 AI C32 C N N 41 AI O5 O N N 42 AI C33 C N S 43 AI C34 C N N 44 AI C35 C N N 45 AI C36 C N N 46 AI N6 N N N 47 AI C37 C N N 48 AI O6 O N N 49 AI N7 N N N 50 AI C38 C N N 51 AI C39 C N N 52 AI C40 C Y N 53 AI C41 C Y N 54 AI N8 N Y N 55 AI C42 C Y N 56 AI C43 C Y N 57 AI C44 C Y N 58 AI H4 H N N 59 AI H14 H N N 60 AI H5 H N N 61 AI H6 H N N 62 AI H111 H N N 63 AI H112 H N N 64 AI H113 H N N 65 AI H7 H N N 66 AI H81 H N N 67 AI H82 H N N 68 AI H83 H N N 69 AI H9 H N N 70 AI H10 H N N 71 AI H121 H N N 72 AI H122 H N N 73 AI H123 H N N 74 AI HN3 H N N 75 AI H21A H N N 76 AI H22A H N N 77 AI HN4 H N N 78 AI H151 H N N 79 AI H152 H N N 80 AI H17 H N N 81 AI H18 H N N 82 AI H19 H N N 83 AI H20 H N N 84 AI H21 H N N 85 AI H22 H N N 86 AI HO3 H N N 87 AI H23 H N N 88 AI HO4 H N N 89 AI H24 H N N 90 AI H251 H N N 91 AI H252 H N N 92 AI H26 H N N 93 AI H271 H N N 94 AI H272 H N N 95 AI H281 H N N 96 AI H282 H N N 97 AI H291 H N N 98 AI H292 H N N 99 AI H301 H N N 100 AI H302 H N N 101 AI H311 H N N 102 AI H312 H N N 103 AI HN5 H N N 104 AI H33 H N N 105 AI H34 H N N 106 AI H351 H N N 107 AI H352 H N N 108 AI H353 H N N 109 AI H361 H N N 110 AI H362 H N N 111 AI H363 H N N 112 AI HN6 H N N 113 AI H381 H N N 114 AI H382 H N N 115 AI H383 H N N 116 AI H391 H N N 117 AI H392 H N N 118 AI H41 H N N 119 AI H42 H N N 120 AI H43 H N N 121 AI H44 H N N 122 ALA N N N N 123 ALA CA C N S 124 ALA C C N N 125 ALA O O N N 126 ALA CB C N N 127 ALA OXT O N N 128 ALA H H N N 129 ALA H2 H N N 130 ALA HA H N N 131 ALA HB1 H N N 132 ALA HB2 H N N 133 ALA HB3 H N N 134 ALA HXT H N N 135 ARG N N N N 136 ARG CA C N S 137 ARG C C N N 138 ARG O O N N 139 ARG CB C N N 140 ARG CG C N N 141 ARG CD C N N 142 ARG NE N N N 143 ARG CZ C N N 144 ARG NH1 N N N 145 ARG NH2 N N N 146 ARG OXT O N N 147 ARG H H N N 148 ARG H2 H N N 149 ARG HA H N N 150 ARG HB2 H N N 151 ARG HB3 H N N 152 ARG HG2 H N N 153 ARG HG3 H N N 154 ARG HD2 H N N 155 ARG HD3 H N N 156 ARG HE H N N 157 ARG HH11 H N N 158 ARG HH12 H N N 159 ARG HH21 H N N 160 ARG HH22 H N N 161 ARG HXT H N N 162 ASN N N N N 163 ASN CA C N S 164 ASN C C N N 165 ASN O O N N 166 ASN CB C N N 167 ASN CG C N N 168 ASN OD1 O N N 169 ASN ND2 N N N 170 ASN OXT O N N 171 ASN H H N N 172 ASN H2 H N N 173 ASN HA H N N 174 ASN HB2 H N N 175 ASN HB3 H N N 176 ASN HD21 H N N 177 ASN HD22 H N N 178 ASN HXT H N N 179 ASP N N N N 180 ASP CA C N S 181 ASP C C N N 182 ASP O O N N 183 ASP CB C N N 184 ASP CG C N N 185 ASP OD1 O N N 186 ASP OD2 O N N 187 ASP OXT O N N 188 ASP H H N N 189 ASP H2 H N N 190 ASP HA H N N 191 ASP HB2 H N N 192 ASP HB3 H N N 193 ASP HD2 H N N 194 ASP HXT H N N 195 CYS N N N N 196 CYS CA C N R 197 CYS C C N N 198 CYS O O N N 199 CYS CB C N N 200 CYS SG S N N 201 CYS OXT O N N 202 CYS H H N N 203 CYS H2 H N N 204 CYS HA H N N 205 CYS HB2 H N N 206 CYS HB3 H N N 207 CYS HG H N N 208 CYS HXT H N N 209 GLN N N N N 210 GLN CA C N S 211 GLN C C N N 212 GLN O O N N 213 GLN CB C N N 214 GLN CG C N N 215 GLN CD C N N 216 GLN OE1 O N N 217 GLN NE2 N N N 218 GLN OXT O N N 219 GLN H H N N 220 GLN H2 H N N 221 GLN HA H N N 222 GLN HB2 H N N 223 GLN HB3 H N N 224 GLN HG2 H N N 225 GLN HG3 H N N 226 GLN HE21 H N N 227 GLN HE22 H N N 228 GLN HXT H N N 229 GLU N N N N 230 GLU CA C N S 231 GLU C C N N 232 GLU O O N N 233 GLU CB C N N 234 GLU CG C N N 235 GLU CD C N N 236 GLU OE1 O N N 237 GLU OE2 O N N 238 GLU OXT O N N 239 GLU H H N N 240 GLU H2 H N N 241 GLU HA H N N 242 GLU HB2 H N N 243 GLU HB3 H N N 244 GLU HG2 H N N 245 GLU HG3 H N N 246 GLU HE2 H N N 247 GLU HXT H N N 248 GLY N N N N 249 GLY CA C N N 250 GLY C C N N 251 GLY O O N N 252 GLY OXT O N N 253 GLY H H N N 254 GLY H2 H N N 255 GLY HA2 H N N 256 GLY HA3 H N N 257 GLY HXT H N N 258 GOL C1 C N N 259 GOL O1 O N N 260 GOL C2 C N N 261 GOL O2 O N N 262 GOL C3 C N N 263 GOL O3 O N N 264 GOL H11 H N N 265 GOL H12 H N N 266 GOL HO1 H N N 267 GOL H2 H N N 268 GOL HO2 H N N 269 GOL H31 H N N 270 GOL H32 H N N 271 GOL HO3 H N N 272 HIS N N N N 273 HIS CA C N S 274 HIS C C N N 275 HIS O O N N 276 HIS CB C N N 277 HIS CG C Y N 278 HIS ND1 N Y N 279 HIS CD2 C Y N 280 HIS CE1 C Y N 281 HIS NE2 N Y N 282 HIS OXT O N N 283 HIS H H N N 284 HIS H2 H N N 285 HIS HA H N N 286 HIS HB2 H N N 287 HIS HB3 H N N 288 HIS HD1 H N N 289 HIS HD2 H N N 290 HIS HE1 H N N 291 HIS HE2 H N N 292 HIS HXT H N N 293 HOH O O N N 294 HOH H1 H N N 295 HOH H2 H N N 296 ILE N N N N 297 ILE CA C N S 298 ILE C C N N 299 ILE O O N N 300 ILE CB C N S 301 ILE CG1 C N N 302 ILE CG2 C N N 303 ILE CD1 C N N 304 ILE OXT O N N 305 ILE H H N N 306 ILE H2 H N N 307 ILE HA H N N 308 ILE HB H N N 309 ILE HG12 H N N 310 ILE HG13 H N N 311 ILE HG21 H N N 312 ILE HG22 H N N 313 ILE HG23 H N N 314 ILE HD11 H N N 315 ILE HD12 H N N 316 ILE HD13 H N N 317 ILE HXT H N N 318 LEU N N N N 319 LEU CA C N S 320 LEU C C N N 321 LEU O O N N 322 LEU CB C N N 323 LEU CG C N N 324 LEU CD1 C N N 325 LEU CD2 C N N 326 LEU OXT O N N 327 LEU H H N N 328 LEU H2 H N N 329 LEU HA H N N 330 LEU HB2 H N N 331 LEU HB3 H N N 332 LEU HG H N N 333 LEU HD11 H N N 334 LEU HD12 H N N 335 LEU HD13 H N N 336 LEU HD21 H N N 337 LEU HD22 H N N 338 LEU HD23 H N N 339 LEU HXT H N N 340 LYS N N N N 341 LYS CA C N S 342 LYS C C N N 343 LYS O O N N 344 LYS CB C N N 345 LYS CG C N N 346 LYS CD C N N 347 LYS CE C N N 348 LYS NZ N N N 349 LYS OXT O N N 350 LYS H H N N 351 LYS H2 H N N 352 LYS HA H N N 353 LYS HB2 H N N 354 LYS HB3 H N N 355 LYS HG2 H N N 356 LYS HG3 H N N 357 LYS HD2 H N N 358 LYS HD3 H N N 359 LYS HE2 H N N 360 LYS HE3 H N N 361 LYS HZ1 H N N 362 LYS HZ2 H N N 363 LYS HZ3 H N N 364 LYS HXT H N N 365 MET N N N N 366 MET CA C N S 367 MET C C N N 368 MET O O N N 369 MET CB C N N 370 MET CG C N N 371 MET SD S N N 372 MET CE C N N 373 MET OXT O N N 374 MET H H N N 375 MET H2 H N N 376 MET HA H N N 377 MET HB2 H N N 378 MET HB3 H N N 379 MET HG2 H N N 380 MET HG3 H N N 381 MET HE1 H N N 382 MET HE2 H N N 383 MET HE3 H N N 384 MET HXT H N N 385 PHE N N N N 386 PHE CA C N S 387 PHE C C N N 388 PHE O O N N 389 PHE CB C N N 390 PHE CG C Y N 391 PHE CD1 C Y N 392 PHE CD2 C Y N 393 PHE CE1 C Y N 394 PHE CE2 C Y N 395 PHE CZ C Y N 396 PHE OXT O N N 397 PHE H H N N 398 PHE H2 H N N 399 PHE HA H N N 400 PHE HB2 H N N 401 PHE HB3 H N N 402 PHE HD1 H N N 403 PHE HD2 H N N 404 PHE HE1 H N N 405 PHE HE2 H N N 406 PHE HZ H N N 407 PHE HXT H N N 408 PRO N N N N 409 PRO CA C N S 410 PRO C C N N 411 PRO O O N N 412 PRO CB C N N 413 PRO CG C N N 414 PRO CD C N N 415 PRO OXT O N N 416 PRO H H N N 417 PRO HA H N N 418 PRO HB2 H N N 419 PRO HB3 H N N 420 PRO HG2 H N N 421 PRO HG3 H N N 422 PRO HD2 H N N 423 PRO HD3 H N N 424 PRO HXT H N N 425 SER N N N N 426 SER CA C N S 427 SER C C N N 428 SER O O N N 429 SER CB C N N 430 SER OG O N N 431 SER OXT O N N 432 SER H H N N 433 SER H2 H N N 434 SER HA H N N 435 SER HB2 H N N 436 SER HB3 H N N 437 SER HG H N N 438 SER HXT H N N 439 THR N N N N 440 THR CA C N S 441 THR C C N N 442 THR O O N N 443 THR CB C N R 444 THR OG1 O N N 445 THR CG2 C N N 446 THR OXT O N N 447 THR H H N N 448 THR H2 H N N 449 THR HA H N N 450 THR HB H N N 451 THR HG1 H N N 452 THR HG21 H N N 453 THR HG22 H N N 454 THR HG23 H N N 455 THR HXT H N N 456 TRP N N N N 457 TRP CA C N S 458 TRP C C N N 459 TRP O O N N 460 TRP CB C N N 461 TRP CG C Y N 462 TRP CD1 C Y N 463 TRP CD2 C Y N 464 TRP NE1 N Y N 465 TRP CE2 C Y N 466 TRP CE3 C Y N 467 TRP CZ2 C Y N 468 TRP CZ3 C Y N 469 TRP CH2 C Y N 470 TRP OXT O N N 471 TRP H H N N 472 TRP H2 H N N 473 TRP HA H N N 474 TRP HB2 H N N 475 TRP HB3 H N N 476 TRP HD1 H N N 477 TRP HE1 H N N 478 TRP HE3 H N N 479 TRP HZ2 H N N 480 TRP HZ3 H N N 481 TRP HH2 H N N 482 TRP HXT H N N 483 TYR N N N N 484 TYR CA C N S 485 TYR C C N N 486 TYR O O N N 487 TYR CB C N N 488 TYR CG C Y N 489 TYR CD1 C Y N 490 TYR CD2 C Y N 491 TYR CE1 C Y N 492 TYR CE2 C Y N 493 TYR CZ C Y N 494 TYR OH O N N 495 TYR OXT O N N 496 TYR H H N N 497 TYR H2 H N N 498 TYR HA H N N 499 TYR HB2 H N N 500 TYR HB3 H N N 501 TYR HD1 H N N 502 TYR HD2 H N N 503 TYR HE1 H N N 504 TYR HE2 H N N 505 TYR HH H N N 506 TYR HXT H N N 507 VAL N N N N 508 VAL CA C N S 509 VAL C C N N 510 VAL O O N N 511 VAL CB C N N 512 VAL CG1 C N N 513 VAL CG2 C N N 514 VAL OXT O N N 515 VAL H H N N 516 VAL H2 H N N 517 VAL HA H N N 518 VAL HB H N N 519 VAL HG11 H N N 520 VAL HG12 H N N 521 VAL HG13 H N N 522 VAL HG21 H N N 523 VAL HG22 H N N 524 VAL HG23 H N N 525 VAL HXT H N N 526 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AI C4 C5 sing Y N 1 AI C4 N2 doub Y N 2 AI C4 H4 sing N N 3 AI C14 N4 sing N N 4 AI C14 C15 sing N N 5 AI C14 C22 sing N N 6 AI C14 H14 sing N N 7 AI C5 C6 doub Y N 8 AI C5 H5 sing N N 9 AI C6 C7 sing Y N 10 AI C6 H6 sing N N 11 AI C11 C10 sing N N 12 AI C11 H111 sing N N 13 AI C11 H112 sing N N 14 AI C11 H113 sing N N 15 AI C7 C3 doub Y N 16 AI C7 H7 sing N N 17 AI C8 N1 sing N N 18 AI C8 H81 sing N N 19 AI C8 H82 sing N N 20 AI C8 H83 sing N N 21 AI C9 C10 sing N N 22 AI C9 C13 sing N N 23 AI C9 N3 sing N N 24 AI C9 H9 sing N N 25 AI C10 C12 sing N N 26 AI C10 H10 sing N N 27 AI C12 H121 sing N N 28 AI C12 H122 sing N N 29 AI C12 H123 sing N N 30 AI C13 O2 doub N N 31 AI C13 N4 sing N N 32 AI N1 C1 sing N N 33 AI N1 C2 sing N N 34 AI N2 C3 sing Y N 35 AI C3 C2 sing N N 36 AI N3 C1 sing N N 37 AI N3 HN3 sing N N 38 AI O1 C1 doub N N 39 AI C2 H21A sing N N 40 AI C2 H22A sing N N 41 AI N4 HN4 sing N N 42 AI C15 C16 sing N N 43 AI C15 H151 sing N N 44 AI C15 H152 sing N N 45 AI C16 C17 sing Y N 46 AI C16 C21 doub Y N 47 AI C17 C18 doub Y N 48 AI C17 H17 sing N N 49 AI C18 C19 sing Y N 50 AI C18 H18 sing N N 51 AI C19 C20 doub Y N 52 AI C19 H19 sing N N 53 AI C20 C21 sing Y N 54 AI C20 H20 sing N N 55 AI C21 H21 sing N N 56 AI C22 O3 sing N N 57 AI C22 C23 sing N N 58 AI C22 H22 sing N N 59 AI O3 HO3 sing N N 60 AI C23 O4 sing N N 61 AI C23 C24 sing N N 62 AI C23 H23 sing N N 63 AI O4 HO4 sing N N 64 AI C24 C25 sing N N 65 AI C24 N5 sing N N 66 AI C24 H24 sing N N 67 AI C25 C26 sing N N 68 AI C25 H251 sing N N 69 AI C25 H252 sing N N 70 AI C26 C27 sing N N 71 AI C26 C31 sing N N 72 AI C26 H26 sing N N 73 AI C27 C28 sing N N 74 AI C27 H271 sing N N 75 AI C27 H272 sing N N 76 AI C28 C29 sing N N 77 AI C28 H281 sing N N 78 AI C28 H282 sing N N 79 AI C29 C30 sing N N 80 AI C29 H291 sing N N 81 AI C29 H292 sing N N 82 AI C30 C31 sing N N 83 AI C30 H301 sing N N 84 AI C30 H302 sing N N 85 AI C31 H311 sing N N 86 AI C31 H312 sing N N 87 AI N5 C32 sing N N 88 AI N5 HN5 sing N N 89 AI C32 O5 doub N N 90 AI C32 C33 sing N N 91 AI C33 C34 sing N N 92 AI C33 N6 sing N N 93 AI C33 H33 sing N N 94 AI C34 C35 sing N N 95 AI C34 C36 sing N N 96 AI C34 H34 sing N N 97 AI C35 H351 sing N N 98 AI C35 H352 sing N N 99 AI C35 H353 sing N N 100 AI C36 H361 sing N N 101 AI C36 H362 sing N N 102 AI C36 H363 sing N N 103 AI N6 C37 sing N N 104 AI N6 HN6 sing N N 105 AI C37 O6 doub N N 106 AI C37 N7 sing N N 107 AI N7 C38 sing N N 108 AI N7 C39 sing N N 109 AI C38 H381 sing N N 110 AI C38 H382 sing N N 111 AI C38 H383 sing N N 112 AI C39 C40 sing N N 113 AI C39 H391 sing N N 114 AI C39 H392 sing N N 115 AI C40 C41 sing Y N 116 AI C40 N8 doub Y N 117 AI C41 C44 doub Y N 118 AI C41 H41 sing N N 119 AI N8 C42 sing Y N 120 AI C42 C43 doub Y N 121 AI C42 H42 sing N N 122 AI C43 C44 sing Y N 123 AI C43 H43 sing N N 124 AI C44 H44 sing N N 125 ALA N CA sing N N 126 ALA N H sing N N 127 ALA N H2 sing N N 128 ALA CA C sing N N 129 ALA CA CB sing N N 130 ALA CA HA sing N N 131 ALA C O doub N N 132 ALA C OXT sing N N 133 ALA CB HB1 sing N N 134 ALA CB HB2 sing N N 135 ALA CB HB3 sing N N 136 ALA OXT HXT sing N N 137 ARG N CA sing N N 138 ARG N H sing N N 139 ARG N H2 sing N N 140 ARG CA C sing N N 141 ARG CA CB sing N N 142 ARG CA HA sing N N 143 ARG C O doub N N 144 ARG C OXT sing N N 145 ARG CB CG sing N N 146 ARG CB HB2 sing N N 147 ARG CB HB3 sing N N 148 ARG CG CD sing N N 149 ARG CG HG2 sing N N 150 ARG CG HG3 sing N N 151 ARG CD NE sing N N 152 ARG CD HD2 sing N N 153 ARG CD HD3 sing N N 154 ARG NE CZ sing N N 155 ARG NE HE sing N N 156 ARG CZ NH1 sing N N 157 ARG CZ NH2 doub N N 158 ARG NH1 HH11 sing N N 159 ARG NH1 HH12 sing N N 160 ARG NH2 HH21 sing N N 161 ARG NH2 HH22 sing N N 162 ARG OXT HXT sing N N 163 ASN N CA sing N N 164 ASN N H sing N N 165 ASN N H2 sing N N 166 ASN CA C sing N N 167 ASN CA CB sing N N 168 ASN CA HA sing N N 169 ASN C O doub N N 170 ASN C OXT sing N N 171 ASN CB CG sing N N 172 ASN CB HB2 sing N N 173 ASN CB HB3 sing N N 174 ASN CG OD1 doub N N 175 ASN CG ND2 sing N N 176 ASN ND2 HD21 sing N N 177 ASN ND2 HD22 sing N N 178 ASN OXT HXT sing N N 179 ASP N CA sing N N 180 ASP N H sing N N 181 ASP N H2 sing N N 182 ASP CA C sing N N 183 ASP CA CB sing N N 184 ASP CA HA sing N N 185 ASP C O doub N N 186 ASP C OXT sing N N 187 ASP CB CG sing N N 188 ASP CB HB2 sing N N 189 ASP CB HB3 sing N N 190 ASP CG OD1 doub N N 191 ASP CG OD2 sing N N 192 ASP OD2 HD2 sing N N 193 ASP OXT HXT sing N N 194 CYS N CA sing N N 195 CYS N H sing N N 196 CYS N H2 sing N N 197 CYS CA C sing N N 198 CYS CA CB sing N N 199 CYS CA HA sing N N 200 CYS C O doub N N 201 CYS C OXT sing N N 202 CYS CB SG sing N N 203 CYS CB HB2 sing N N 204 CYS CB HB3 sing N N 205 CYS SG HG sing N N 206 CYS OXT HXT sing N N 207 GLN N CA sing N N 208 GLN N H sing N N 209 GLN N H2 sing N N 210 GLN CA C sing N N 211 GLN CA CB sing N N 212 GLN CA HA sing N N 213 GLN C O doub N N 214 GLN C OXT sing N N 215 GLN CB CG sing N N 216 GLN CB HB2 sing N N 217 GLN CB HB3 sing N N 218 GLN CG CD sing N N 219 GLN CG HG2 sing N N 220 GLN CG HG3 sing N N 221 GLN CD OE1 doub N N 222 GLN CD NE2 sing N N 223 GLN NE2 HE21 sing N N 224 GLN NE2 HE22 sing N N 225 GLN OXT HXT sing N N 226 GLU N CA sing N N 227 GLU N H sing N N 228 GLU N H2 sing N N 229 GLU CA C sing N N 230 GLU CA CB sing N N 231 GLU CA HA sing N N 232 GLU C O doub N N 233 GLU C OXT sing N N 234 GLU CB CG sing N N 235 GLU CB HB2 sing N N 236 GLU CB HB3 sing N N 237 GLU CG CD sing N N 238 GLU CG HG2 sing N N 239 GLU CG HG3 sing N N 240 GLU CD OE1 doub N N 241 GLU CD OE2 sing N N 242 GLU OE2 HE2 sing N N 243 GLU OXT HXT sing N N 244 GLY N CA sing N N 245 GLY N H sing N N 246 GLY N H2 sing N N 247 GLY CA C sing N N 248 GLY CA HA2 sing N N 249 GLY CA HA3 sing N N 250 GLY C O doub N N 251 GLY C OXT sing N N 252 GLY OXT HXT sing N N 253 GOL C1 O1 sing N N 254 GOL C1 C2 sing N N 255 GOL C1 H11 sing N N 256 GOL C1 H12 sing N N 257 GOL O1 HO1 sing N N 258 GOL C2 O2 sing N N 259 GOL C2 C3 sing N N 260 GOL C2 H2 sing N N 261 GOL O2 HO2 sing N N 262 GOL C3 O3 sing N N 263 GOL C3 H31 sing N N 264 GOL C3 H32 sing N N 265 GOL O3 HO3 sing N N 266 HIS N CA sing N N 267 HIS N H sing N N 268 HIS N H2 sing N N 269 HIS CA C sing N N 270 HIS CA CB sing N N 271 HIS CA HA sing N N 272 HIS C O doub N N 273 HIS C OXT sing N N 274 HIS CB CG sing N N 275 HIS CB HB2 sing N N 276 HIS CB HB3 sing N N 277 HIS CG ND1 sing Y N 278 HIS CG CD2 doub Y N 279 HIS ND1 CE1 doub Y N 280 HIS ND1 HD1 sing N N 281 HIS CD2 NE2 sing Y N 282 HIS CD2 HD2 sing N N 283 HIS CE1 NE2 sing Y N 284 HIS CE1 HE1 sing N N 285 HIS NE2 HE2 sing N N 286 HIS OXT HXT sing N N 287 HOH O H1 sing N N 288 HOH O H2 sing N N 289 ILE N CA sing N N 290 ILE N H sing N N 291 ILE N H2 sing N N 292 ILE CA C sing N N 293 ILE CA CB sing N N 294 ILE CA HA sing N N 295 ILE C O doub N N 296 ILE C OXT sing N N 297 ILE CB CG1 sing N N 298 ILE CB CG2 sing N N 299 ILE CB HB sing N N 300 ILE CG1 CD1 sing N N 301 ILE CG1 HG12 sing N N 302 ILE CG1 HG13 sing N N 303 ILE CG2 HG21 sing N N 304 ILE CG2 HG22 sing N N 305 ILE CG2 HG23 sing N N 306 ILE CD1 HD11 sing N N 307 ILE CD1 HD12 sing N N 308 ILE CD1 HD13 sing N N 309 ILE OXT HXT sing N N 310 LEU N CA sing N N 311 LEU N H sing N N 312 LEU N H2 sing N N 313 LEU CA C sing N N 314 LEU CA CB sing N N 315 LEU CA HA sing N N 316 LEU C O doub N N 317 LEU C OXT sing N N 318 LEU CB CG sing N N 319 LEU CB HB2 sing N N 320 LEU CB HB3 sing N N 321 LEU CG CD1 sing N N 322 LEU CG CD2 sing N N 323 LEU CG HG sing N N 324 LEU CD1 HD11 sing N N 325 LEU CD1 HD12 sing N N 326 LEU CD1 HD13 sing N N 327 LEU CD2 HD21 sing N N 328 LEU CD2 HD22 sing N N 329 LEU CD2 HD23 sing N N 330 LEU OXT HXT sing N N 331 LYS N CA sing N N 332 LYS N H sing N N 333 LYS N H2 sing N N 334 LYS CA C sing N N 335 LYS CA CB sing N N 336 LYS CA HA sing N N 337 LYS C O doub N N 338 LYS C OXT sing N N 339 LYS CB CG sing N N 340 LYS CB HB2 sing N N 341 LYS CB HB3 sing N N 342 LYS CG CD sing N N 343 LYS CG HG2 sing N N 344 LYS CG HG3 sing N N 345 LYS CD CE sing N N 346 LYS CD HD2 sing N N 347 LYS CD HD3 sing N N 348 LYS CE NZ sing N N 349 LYS CE HE2 sing N N 350 LYS CE HE3 sing N N 351 LYS NZ HZ1 sing N N 352 LYS NZ HZ2 sing N N 353 LYS NZ HZ3 sing N N 354 LYS OXT HXT sing N N 355 MET N CA sing N N 356 MET N H sing N N 357 MET N H2 sing N N 358 MET CA C sing N N 359 MET CA CB sing N N 360 MET CA HA sing N N 361 MET C O doub N N 362 MET C OXT sing N N 363 MET CB CG sing N N 364 MET CB HB2 sing N N 365 MET CB HB3 sing N N 366 MET CG SD sing N N 367 MET CG HG2 sing N N 368 MET CG HG3 sing N N 369 MET SD CE sing N N 370 MET CE HE1 sing N N 371 MET CE HE2 sing N N 372 MET CE HE3 sing N N 373 MET OXT HXT sing N N 374 PHE N CA sing N N 375 PHE N H sing N N 376 PHE N H2 sing N N 377 PHE CA C sing N N 378 PHE CA CB sing N N 379 PHE CA HA sing N N 380 PHE C O doub N N 381 PHE C OXT sing N N 382 PHE CB CG sing N N 383 PHE CB HB2 sing N N 384 PHE CB HB3 sing N N 385 PHE CG CD1 doub Y N 386 PHE CG CD2 sing Y N 387 PHE CD1 CE1 sing Y N 388 PHE CD1 HD1 sing N N 389 PHE CD2 CE2 doub Y N 390 PHE CD2 HD2 sing N N 391 PHE CE1 CZ doub Y N 392 PHE CE1 HE1 sing N N 393 PHE CE2 CZ sing Y N 394 PHE CE2 HE2 sing N N 395 PHE CZ HZ sing N N 396 PHE OXT HXT sing N N 397 PRO N CA sing N N 398 PRO N CD sing N N 399 PRO N H sing N N 400 PRO CA C sing N N 401 PRO CA CB sing N N 402 PRO CA HA sing N N 403 PRO C O doub N N 404 PRO C OXT sing N N 405 PRO CB CG sing N N 406 PRO CB HB2 sing N N 407 PRO CB HB3 sing N N 408 PRO CG CD sing N N 409 PRO CG HG2 sing N N 410 PRO CG HG3 sing N N 411 PRO CD HD2 sing N N 412 PRO CD HD3 sing N N 413 PRO OXT HXT sing N N 414 SER N CA sing N N 415 SER N H sing N N 416 SER N H2 sing N N 417 SER CA C sing N N 418 SER CA CB sing N N 419 SER CA HA sing N N 420 SER C O doub N N 421 SER C OXT sing N N 422 SER CB OG sing N N 423 SER CB HB2 sing N N 424 SER CB HB3 sing N N 425 SER OG HG sing N N 426 SER OXT HXT sing N N 427 THR N CA sing N N 428 THR N H sing N N 429 THR N H2 sing N N 430 THR CA C sing N N 431 THR CA CB sing N N 432 THR CA HA sing N N 433 THR C O doub N N 434 THR C OXT sing N N 435 THR CB OG1 sing N N 436 THR CB CG2 sing N N 437 THR CB HB sing N N 438 THR OG1 HG1 sing N N 439 THR CG2 HG21 sing N N 440 THR CG2 HG22 sing N N 441 THR CG2 HG23 sing N N 442 THR OXT HXT sing N N 443 TRP N CA sing N N 444 TRP N H sing N N 445 TRP N H2 sing N N 446 TRP CA C sing N N 447 TRP CA CB sing N N 448 TRP CA HA sing N N 449 TRP C O doub N N 450 TRP C OXT sing N N 451 TRP CB CG sing N N 452 TRP CB HB2 sing N N 453 TRP CB HB3 sing N N 454 TRP CG CD1 doub Y N 455 TRP CG CD2 sing Y N 456 TRP CD1 NE1 sing Y N 457 TRP CD1 HD1 sing N N 458 TRP CD2 CE2 doub Y N 459 TRP CD2 CE3 sing Y N 460 TRP NE1 CE2 sing Y N 461 TRP NE1 HE1 sing N N 462 TRP CE2 CZ2 sing Y N 463 TRP CE3 CZ3 doub Y N 464 TRP CE3 HE3 sing N N 465 TRP CZ2 CH2 doub Y N 466 TRP CZ2 HZ2 sing N N 467 TRP CZ3 CH2 sing Y N 468 TRP CZ3 HZ3 sing N N 469 TRP CH2 HH2 sing N N 470 TRP OXT HXT sing N N 471 TYR N CA sing N N 472 TYR N H sing N N 473 TYR N H2 sing N N 474 TYR CA C sing N N 475 TYR CA CB sing N N 476 TYR CA HA sing N N 477 TYR C O doub N N 478 TYR C OXT sing N N 479 TYR CB CG sing N N 480 TYR CB HB2 sing N N 481 TYR CB HB3 sing N N 482 TYR CG CD1 doub Y N 483 TYR CG CD2 sing Y N 484 TYR CD1 CE1 sing Y N 485 TYR CD1 HD1 sing N N 486 TYR CD2 CE2 doub Y N 487 TYR CD2 HD2 sing N N 488 TYR CE1 CZ doub Y N 489 TYR CE1 HE1 sing N N 490 TYR CE2 CZ sing Y N 491 TYR CE2 HE2 sing N N 492 TYR CZ OH sing N N 493 TYR OH HH sing N N 494 TYR OXT HXT sing N N 495 VAL N CA sing N N 496 VAL N H sing N N 497 VAL N H2 sing N N 498 VAL CA C sing N N 499 VAL CA CB sing N N 500 VAL CA HA sing N N 501 VAL C O doub N N 502 VAL C OXT sing N N 503 VAL CB CG1 sing N N 504 VAL CB CG2 sing N N 505 VAL CB HB sing N N 506 VAL CG1 HG11 sing N N 507 VAL CG1 HG12 sing N N 508 VAL CG1 HG13 sing N N 509 VAL CG2 HG21 sing N N 510 VAL CG2 HG22 sing N N 511 VAL CG2 HG23 sing N N 512 VAL OXT HXT sing N N 513 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 ;(2S,2'S)-N,N'-[(2S,3S,4S,5S)-1-CYCLOHEXYL-3,4-DIHYDROXY-6-PHENYLHEXANE-2,5-DIYL]BIS[3-METHYL-2-({[METHYL(PYRIDIN-2-YLMETHYL)AMINO]CARBONYL}AMINO)BUTANAMIDE] ; AI 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HXW _pdbx_initial_refinement_model.details ? #