HEADER CHAPERONE/CELL INVASION 08-JAN-06 2FM8 TITLE CRYSTAL STRUCTURE OF THE SALMONELLA SECRETION CHAPERONE INVB IN TITLE 2 COMPLEX WITH SIPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAK; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: INVASION PROTEIN INVB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CELL INVASION PROTEIN SIPA; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: EFFECTOR PROTEIN SIPA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 GENE: SPAK, INVB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 12 ORGANISM_TAXID: 602; SOURCE 13 GENE: SIPA, SSPA; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3 KEYWDS TYPE III SECRETION, CHAPERONE, TRANSLOCATION, PROTEIN FOLDING, KEYWDS 2 VIRULENCE, SALMONELLA, BACTERIAL, CHAPERONE-CELL INVASION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.LILIC,M.VUJANAC,C.E.STEBBINS REVDAT 5 14-FEB-24 2FM8 1 SEQADV REVDAT 4 18-OCT-17 2FM8 1 REMARK REVDAT 3 13-JUL-11 2FM8 1 VERSN REVDAT 2 24-FEB-09 2FM8 1 VERSN REVDAT 1 21-MAR-06 2FM8 0 JRNL AUTH M.LILIC,M.VUJANAC,C.E.STEBBINS JRNL TITL A COMMON STRUCTURAL MOTIF IN THE BINDING OF VIRULENCE JRNL TITL 2 FACTORS TO BACTERIAL SECRETION CHAPERONES. JRNL REF MOL.CELL V. 21 653 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16507363 JRNL DOI 10.1016/J.MOLCEL.2006.01.026 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 49515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 612 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.943 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3749 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3484 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5064 ; 1.400 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8116 ; 0.821 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 5.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;35.495 ;25.472 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;15.628 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4123 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 694 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 866 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3352 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1830 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2117 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 454 ; 0.238 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.093 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.289 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3086 ; 1.260 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 979 ; 0.196 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3798 ; 1.460 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 2.593 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1266 ; 3.689 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9120 48.0900 19.5710 REMARK 3 T TENSOR REMARK 3 T11: -0.0767 T22: 0.0686 REMARK 3 T33: -0.0503 T12: -0.0081 REMARK 3 T13: -0.0746 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 2.3651 L22: 0.7501 REMARK 3 L33: 1.2767 L12: -0.3120 REMARK 3 L13: 1.1183 L23: -0.1525 REMARK 3 S TENSOR REMARK 3 S11: 0.0765 S12: -0.2357 S13: -0.0917 REMARK 3 S21: 0.0772 S22: 0.0370 S23: 0.0069 REMARK 3 S31: 0.0902 S32: -0.0711 S33: -0.1135 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7620 38.7200 7.2860 REMARK 3 T TENSOR REMARK 3 T11: -0.0789 T22: 0.0206 REMARK 3 T33: 0.0143 T12: -0.0449 REMARK 3 T13: -0.0739 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.9496 L22: 1.3697 REMARK 3 L33: 1.0542 L12: 0.5833 REMARK 3 L13: 0.0062 L23: -0.7188 REMARK 3 S TENSOR REMARK 3 S11: 0.1330 S12: -0.0859 S13: -0.2758 REMARK 3 S21: -0.0248 S22: -0.0950 S23: -0.0435 REMARK 3 S31: 0.1315 S32: -0.0080 S33: -0.0381 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 23 C 44 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2300 51.6380 25.6840 REMARK 3 T TENSOR REMARK 3 T11: -0.0599 T22: -0.0190 REMARK 3 T33: -0.1169 T12: -0.0061 REMARK 3 T13: -0.0890 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 5.4818 L22: 1.4457 REMARK 3 L33: 6.7616 L12: 0.8161 REMARK 3 L13: -1.8821 L23: 1.6182 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.5714 S13: 0.0268 REMARK 3 S21: 0.1637 S22: 0.0228 S23: -0.0387 REMARK 3 S31: 0.2779 S32: 0.2350 S33: -0.0330 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 52 C 262 REMARK 3 ORIGIN FOR THE GROUP (A): -25.3730 75.0990 -1.5840 REMARK 3 T TENSOR REMARK 3 T11: -0.0794 T22: 0.0204 REMARK 3 T33: -0.0264 T12: -0.0275 REMARK 3 T13: -0.0020 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0524 L22: 0.8672 REMARK 3 L33: 0.3122 L12: -0.3540 REMARK 3 L13: 0.2178 L23: -0.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.0240 S13: 0.0909 REMARK 3 S21: 0.0222 S22: 0.0100 S23: -0.0433 REMARK 3 S31: -0.0128 S32: 0.0476 S33: -0.0442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66495 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27MG/ML PROTEIN WITH AN EQUILIBRATION REMARK 280 BUFFER CONSISTING OF 3.8M NA-FORMATE, 0.9M NA-CACODYLATE PH 5.2 REMARK 280 AND 0.09M GUANIDINE-HYDROCHLORIDE AS AN ADDITIVE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.22333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.44667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.22333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.44667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.22333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 104.44667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.22333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 104.44667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -73.25250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.87705 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 -73.25250 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 126.87705 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 73.25250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.87705 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 135 REMARK 465 PRO B 21 REMARK 465 SER B 22 REMARK 465 LEU B 23 REMARK 465 ILE B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 ILE B 27 REMARK 465 ASP B 28 REMARK 465 SER B 29 REMARK 465 HIS B 30 REMARK 465 GLU C 45 REMARK 465 ILE C 46 REMARK 465 LYS C 47 REMARK 465 GLY C 48 REMARK 465 PRO C 49 REMARK 465 GLN C 50 REMARK 465 LEU C 51 REMARK 465 THR C 167 REMARK 465 GLY C 168 REMARK 465 GLY C 169 REMARK 465 THR C 230 REMARK 465 GLN C 231 REMARK 465 GLU C 232 REMARK 465 GLN C 233 REMARK 465 GLY C 234 REMARK 465 THR C 235 REMARK 465 SER C 236 REMARK 465 VAL C 237 REMARK 465 GLY C 238 REMARK 465 ARG C 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 364 O HOH C 569 2.02 REMARK 500 O HOH C 306 O HOH C 573 2.02 REMARK 500 SG CYS A 44 O HOH A 277 2.04 REMARK 500 SG CYS C 197 O HOH C 574 2.05 REMARK 500 CD GLN C 126 O HOH C 570 2.05 REMARK 500 N GLU C 240 O HOH C 566 2.07 REMARK 500 NZ LYS C 146 O HOH C 578 2.11 REMARK 500 O HOH B 193 O HOH B 267 2.13 REMARK 500 O HOH B 157 O HOH C 469 2.13 REMARK 500 O HOH B 247 O HOH B 260 2.14 REMARK 500 OE1 GLU C 192 O HOH C 564 2.15 REMARK 500 O HOH B 141 O HOH B 259 2.16 REMARK 500 SG CYS B 44 O HOH B 270 2.16 REMARK 500 NZ LYS C 147 O HOH C 553 2.17 REMARK 500 O HOH A 199 O HOH A 218 2.17 REMARK 500 O HOH C 266 O HOH C 568 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 145 O HOH C 577 4565 2.08 REMARK 500 O HOH B 139 O HOH C 563 4565 2.09 REMARK 500 O HOH A 171 O HOH B 271 11555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 75 CG - SD - CE ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 -30.28 -162.69 REMARK 500 ASP A 28 -0.70 148.46 REMARK 500 ASP A 49 69.01 36.04 REMARK 500 THR B 32 134.67 -39.31 REMARK 500 ALA B 39 18.80 59.69 REMARK 500 ASP B 50 -5.58 79.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 2FM8 A 1 134 UNP P0A1N0 SPAK_SALTY 1 134 DBREF 2FM8 B 1 134 UNP P0A1N0 SPAK_SALTY 1 134 DBREF 2FM8 C 23 262 UNP Q56027 SIPA_SALTY 23 262 SEQADV 2FM8 ARG A 135 UNP P0A1N0 CLONING ARTIFACT SEQADV 2FM8 ARG B 135 UNP P0A1N0 CLONING ARTIFACT SEQRES 1 A 135 MET GLN HIS LEU ASP ILE ALA GLU LEU VAL ARG SER ALA SEQRES 2 A 135 LEU GLU VAL SER GLY CYS ASP PRO SER LEU ILE GLY GLY SEQRES 3 A 135 ILE ASP SER HIS SER THR ILE VAL LEU ASP LEU PHE ALA SEQRES 4 A 135 LEU PRO SER ILE CYS ILE SER VAL LYS ASP ASP ASP VAL SEQRES 5 A 135 TRP ILE TRP ALA GLN LEU GLY ALA ASP SER MET VAL VAL SEQRES 6 A 135 LEU GLN GLN ARG ALA TYR GLU ILE LEU MET THR ILE MET SEQRES 7 A 135 GLU GLY CYS HIS PHE ALA ARG GLY GLY GLN LEU LEU LEU SEQRES 8 A 135 GLY GLU GLN ASN GLY GLU LEU THR LEU LYS ALA LEU VAL SEQRES 9 A 135 HIS PRO ASP PHE LEU SER ASP GLY GLU LYS PHE SER THR SEQRES 10 A 135 ALA LEU ASN GLY PHE TYR ASN TYR LEU GLU VAL PHE SER SEQRES 11 A 135 ARG SER LEU MET ARG SEQRES 1 B 135 MET GLN HIS LEU ASP ILE ALA GLU LEU VAL ARG SER ALA SEQRES 2 B 135 LEU GLU VAL SER GLY CYS ASP PRO SER LEU ILE GLY GLY SEQRES 3 B 135 ILE ASP SER HIS SER THR ILE VAL LEU ASP LEU PHE ALA SEQRES 4 B 135 LEU PRO SER ILE CYS ILE SER VAL LYS ASP ASP ASP VAL SEQRES 5 B 135 TRP ILE TRP ALA GLN LEU GLY ALA ASP SER MET VAL VAL SEQRES 6 B 135 LEU GLN GLN ARG ALA TYR GLU ILE LEU MET THR ILE MET SEQRES 7 B 135 GLU GLY CYS HIS PHE ALA ARG GLY GLY GLN LEU LEU LEU SEQRES 8 B 135 GLY GLU GLN ASN GLY GLU LEU THR LEU LYS ALA LEU VAL SEQRES 9 B 135 HIS PRO ASP PHE LEU SER ASP GLY GLU LYS PHE SER THR SEQRES 10 B 135 ALA LEU ASN GLY PHE TYR ASN TYR LEU GLU VAL PHE SER SEQRES 11 B 135 ARG SER LEU MET ARG SEQRES 1 C 240 GLN ALA THR ASN LEU ALA ALA ASN LEU SER ALA VAL ARG SEQRES 2 C 240 GLU SER ALA THR ALA THR LEU SER GLY GLU ILE LYS GLY SEQRES 3 C 240 PRO GLN LEU GLU ASP PHE PRO ALA LEU ILE LYS GLN ALA SEQRES 4 C 240 SER LEU ASP ALA LEU PHE LYS CYS GLY LYS ASP ALA GLU SEQRES 5 C 240 ALA LEU LYS GLU VAL PHE THR ASN SER ASN ASN VAL ALA SEQRES 6 C 240 GLY LYS LYS ALA ILE MET GLU PHE ALA GLY LEU PHE ARG SEQRES 7 C 240 SER ALA LEU ASN ALA THR SER ASP SER PRO GLU ALA LYS SEQRES 8 C 240 THR LEU LEU MET LYS VAL GLY ALA GLU TYR THR ALA GLN SEQRES 9 C 240 ILE ILE LYS ASP GLY LEU LYS GLU LYS SER ALA PHE GLY SEQRES 10 C 240 PRO TRP LEU PRO GLU THR LYS LYS ALA GLU ALA LYS LEU SEQRES 11 C 240 GLU ASN LEU GLU LYS GLN LEU LEU ASP ILE ILE LYS ASN SEQRES 12 C 240 ASN THR GLY GLY GLU LEU SER LYS LEU SER THR ASN LEU SEQRES 13 C 240 VAL MET GLN GLU VAL MET PRO TYR ILE ALA SER CYS ILE SEQRES 14 C 240 GLU HIS ASN PHE GLY CYS THR LEU ASP PRO LEU THR ARG SEQRES 15 C 240 SER ASN LEU THR HIS LEU VAL ASP LYS ALA ALA ALA LYS SEQRES 16 C 240 ALA VAL GLU ALA LEU ASP MET CYS HIS GLN LYS LEU THR SEQRES 17 C 240 GLN GLU GLN GLY THR SER VAL GLY ARG GLU ALA ARG HIS SEQRES 18 C 240 LEU GLU MET GLN THR LEU ILE PRO LEU LEU LEU ARG ASN SEQRES 19 C 240 VAL PHE ALA GLN ILE PRO FORMUL 4 HOH *612(H2 O) HELIX 1 1 ASP A 5 GLY A 18 1 14 HELIX 2 2 ASP A 20 ILE A 24 5 5 HELIX 3 3 ASP A 61 GLU A 79 1 19 HELIX 4 4 ALA A 84 GLN A 88 5 5 HELIX 5 5 HIS A 105 LEU A 109 5 5 HELIX 6 6 ASP A 111 LEU A 133 1 23 HELIX 7 7 ASP B 5 VAL B 16 1 12 HELIX 8 8 ASP B 61 ARG B 69 1 9 HELIX 9 9 ARG B 69 MET B 78 1 10 HELIX 10 10 ALA B 84 GLN B 88 5 5 HELIX 11 11 HIS B 105 LEU B 109 5 5 HELIX 12 12 ASP B 111 MET B 134 1 24 HELIX 13 13 THR C 25 ASN C 30 1 6 HELIX 14 14 ASP C 53 LYS C 68 1 16 HELIX 15 15 ASP C 72 SER C 83 1 12 HELIX 16 16 ASN C 85 SER C 107 1 23 HELIX 17 17 SER C 109 GLY C 131 1 23 HELIX 18 18 THR C 145 ASN C 166 1 22 HELIX 19 19 SER C 172 ASN C 194 1 23 HELIX 20 20 ASP C 200 SER C 205 1 6 HELIX 21 21 LEU C 207 LEU C 229 1 23 HELIX 22 22 GLU C 240 ILE C 261 1 22 SHEET 1 A 6 LEU A 90 GLN A 94 0 SHEET 2 A 6 GLU A 97 LEU A 103 -1 O THR A 99 N GLY A 92 SHEET 3 A 6 ASP A 51 GLN A 57 -1 N ILE A 54 O ALA A 102 SHEET 4 A 6 ILE A 43 LYS A 48 -1 N SER A 46 O TRP A 53 SHEET 5 A 6 THR A 32 LEU A 37 -1 N LEU A 35 O ILE A 43 SHEET 6 A 6 LEU C 31 SER C 37 -1 O ARG C 35 N VAL A 34 SHEET 1 B 5 ILE B 33 LEU B 35 0 SHEET 2 B 5 ILE B 43 LYS B 48 -1 O ILE B 45 N ILE B 33 SHEET 3 B 5 ASP B 51 GLN B 57 -1 O TRP B 55 N CYS B 44 SHEET 4 B 5 GLU B 97 LEU B 103 -1 O ALA B 102 N ILE B 54 SHEET 5 B 5 LEU B 90 GLN B 94 -1 N LEU B 90 O LYS B 101 CRYST1 146.505 146.505 156.670 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006830 0.003940 0.000000 0.00000 SCALE2 0.000000 0.007880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006380 0.00000