HEADER OXIDOREDUCTASE 12-JAN-06 2FNZ OBSLTE 17-DEC-14 2FNZ 4ND1 TITLE CRYSTAL STRUCTURE OF THE LACTATE DEHYDROGENASE FROM CRYPTOSPORIDIUM TITLE 2 PARVUM COMPLEXED WITH COFACTOR (B-NICOTINAMIDE ADENINE DINUCLEOTIDE) TITLE 3 AND INHIBITOR (OXAMIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM; SOURCE 3 ORGANISM_TAXID: 5807; SOURCE 4 GENE: LDH1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ENZYME-INHIBITOR-COFACTOR COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.SENKOVICH,D.CHATTOPADHYAY REVDAT 4 17-DEC-14 2FNZ 1 OBSLTE REVDAT 3 13-JUL-11 2FNZ 1 VERSN REVDAT 2 24-FEB-09 2FNZ 1 VERSN REVDAT 1 23-JAN-07 2FNZ 0 JRNL AUTH O.A.SENKOVICH,D.CHATTOPADHYAY JRNL TITL STRUCTURE OF CRYPTOSPORIDIUM PARVUM LACTATE DEHYDROGENASE IN JRNL TITL 2 COMPLEX WITH SUBSTRATES AND COFACTORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 60768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5963 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 673 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.92700 REMARK 3 B22 (A**2) : -6.92700 REMARK 3 B33 (A**2) : 13.85400 REMARK 3 B12 (A**2) : -6.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 36.59 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NAD_OXM_GOL_PAR.TXT REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB036102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2EWD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.41333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.70667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.70667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.41333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC REMARK 300 UNIT WHICH CONSISTS OF 2 CHAIN(S). ALTHOUGH LDH ENZYMES ARE KNOWN REMARK 300 TO BE FUNCTIONAL AS TETRAMERS AND IN SOLUTION C. PARVUM LDH IS REMARK 300 TETRAMERIC, THIS ENZYME WAS EARLIER REPORTED TO BE DIMERIC [REF: REMARK 300 MADERN D., CAI X, ABRAHAMSEN MS, ZHU G. (2004) "EVOLUTION OF REMARK 300 CRYPTOSPORIDIUM PARVUM LACTATE DEHYDROGENASE FROM MALATE REMARK 300 DEHYDROGENASE BY A VERY RECENT EVENT OF GENE DUPLICATION" MOL. REMARK 300 BIOL. EVOL. 21, 489-497]. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 334 REMARK 465 ALA A 335 REMARK 465 GLY A 336 REMARK 465 ALA A 337 REMARK 465 ALA B 334 REMARK 465 ALA B 335 REMARK 465 GLY B 336 REMARK 465 ALA B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 47.55 -107.00 REMARK 500 ASP A 53 141.89 173.95 REMARK 500 ASN A 83 20.83 -158.55 REMARK 500 SER A 99 148.53 -170.22 REMARK 500 GLU A 111 -8.14 -55.16 REMARK 500 CYS A 131 61.83 179.96 REMARK 500 LEU A 142 -79.85 -25.71 REMARK 500 ALA A 164 -65.18 -167.81 REMARK 500 ALA A 202 80.53 -58.04 REMARK 500 LYS A 243A -58.54 78.47 REMARK 500 TYR A 247 -29.65 -144.33 REMARK 500 LYS A 266 38.99 70.96 REMARK 500 ASN A 277 21.20 166.91 REMARK 500 ASP A 301 163.41 177.94 REMARK 500 ILE B 18 121.10 77.24 REMARK 500 ASP B 53 143.13 -173.72 REMARK 500 LYS B 105B -74.53 -70.28 REMARK 500 SER B 110 -28.94 -146.71 REMARK 500 CYS B 131 68.15 -151.67 REMARK 500 LEU B 142 -67.67 -27.57 REMARK 500 LYS B 151 -72.43 -48.23 REMARK 500 ALA B 164 -69.52 -157.77 REMARK 500 HIS B 195 -166.84 -75.62 REMARK 500 ALA B 202 85.08 -48.84 REMARK 500 ILE B 219 125.60 -171.46 REMARK 500 LYS B 243A -34.11 67.57 REMARK 500 THR B 243B -78.72 -84.50 REMARK 500 ALA B 246 140.60 -24.74 REMARK 500 TYR B 247 -18.44 -148.08 REMARK 500 ALA B 273 -164.05 -112.60 REMARK 500 TYR B 279 24.65 37.02 REMARK 500 LYS B 295 -9.90 -56.96 REMARK 500 ASP B 301 150.40 177.60 REMARK 500 THR B 324 -72.39 -48.58 REMARK 500 ASP B 330 -74.32 -63.59 REMARK 500 ASN B 331 75.78 -66.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EWD RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SUBSTRATE (PYRUVIC ACID) REMARK 900 AND COFACTOR ANALOG (3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE) REMARK 900 RELATED ID: 2FM3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SUBSTRATE (PYRUVIC ACID) REMARK 900 AND COFACTOR (B-NICOTINAMIDE ADENINE DINUCLEOTIDE) REMARK 900 RELATED ID: 2FN7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SUBSTRATE (LACTIC ACID) AND REMARK 900 COFACTOR (B-NICOTINAMIDE ADENINE DINUCLEOTIDE) REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 PEPTIDE SEQUENCE FOR THIS ENTRY WAS TRANSLATED FROM DNA REMARK 999 SEQUENCING OF ACTUAL CLONE USED FOR PROTEIN EXPRESSION. REMARK 999 AUTHORS DO NOT KNOW IF THE SEQUENCE DIFFERENCES ARE PCR REMARK 999 ERRORS OR MUTATIONS CORRESPONDING DNA POLYMORPHISM OR REMARK 999 THERE WERE ERRORS IN PROTEIN DATABASE. DBREF 2FNZ A 17 337 GB 10444017 AAG17668 1 321 DBREF 2FNZ B 17 337 GB 10444017 AAG17668 1 321 SEQADV 2FNZ ALA A 202 GB 10444017 VAL 184 SEE REMARK 999 SEQADV 2FNZ ALA B 202 GB 10444017 VAL 184 SEE REMARK 999 SEQRES 1 A 321 MET ILE GLU ARG ARG LYS ILE ALA VAL ILE GLY SER GLY SEQRES 2 A 321 GLN ILE GLY GLY ASN ILE ALA TYR ILE VAL GLY LYS ASP SEQRES 3 A 321 ASN LEU ALA ASP VAL VAL LEU PHE ASP ILE ALA GLU GLY SEQRES 4 A 321 ILE PRO GLN GLY LYS ALA LEU ASP ILE THR HIS SER MET SEQRES 5 A 321 VAL MET PHE GLY SER THR SER LYS VAL ILE GLY THR ASN SEQRES 6 A 321 ASP TYR ALA ASP ILE SER GLY SER ASP VAL VAL ILE ILE SEQRES 7 A 321 THR ALA SER ILE PRO GLY ARG PRO LYS ASP ASP ARG SER SEQRES 8 A 321 GLU LEU LEU PHE GLY ASN ALA ARG ILE LEU ASP SER VAL SEQRES 9 A 321 ALA GLU GLY VAL LYS LYS TYR CYS PRO ASN ALA PHE VAL SEQRES 10 A 321 ILE CYS ILE THR ASN PRO LEU ASP VAL MET VAL SER HIS SEQRES 11 A 321 PHE GLN LYS VAL SER GLY LEU PRO HIS ASN LYS VAL CYS SEQRES 12 A 321 GLY MET ALA GLY VAL LEU ASP SER SER ARG PHE ARG THR SEQRES 13 A 321 PHE ILE ALA GLN HIS PHE GLY VAL ASN ALA SER ASP VAL SEQRES 14 A 321 SER ALA ASN VAL ILE GLY GLY HIS GLY ASP GLY MET VAL SEQRES 15 A 321 PRO ALA THR SER SER VAL SER VAL GLY GLY VAL PRO LEU SEQRES 16 A 321 SER SER PHE ILE LYS GLN GLY LEU ILE THR GLN GLU GLN SEQRES 17 A 321 ILE ASP GLU ILE VAL CYS HIS THR ARG ILE ALA TRP LYS SEQRES 18 A 321 GLU VAL ALA ASP ASN LEU LYS THR GLY THR ALA TYR PHE SEQRES 19 A 321 ALA PRO ALA ALA ALA ALA VAL LYS MET ALA GLU ALA TYR SEQRES 20 A 321 LEU LYS ASP LYS LYS ALA VAL VAL PRO CYS SER ALA PHE SEQRES 21 A 321 CYS SER ASN HIS TYR GLY VAL LYS GLY ILE TYR MET GLY SEQRES 22 A 321 VAL PRO THR ILE ILE GLY LYS ASN GLY VAL GLU ASP ILE SEQRES 23 A 321 LEU GLU LEU ASP LEU THR PRO LEU GLU GLN LYS LEU LEU SEQRES 24 A 321 GLY GLU SER ILE ASN GLU VAL ASN THR ILE SER LYS VAL SEQRES 25 A 321 LEU ASP ASN ALA PRO ALA ALA GLY ALA SEQRES 1 B 321 MET ILE GLU ARG ARG LYS ILE ALA VAL ILE GLY SER GLY SEQRES 2 B 321 GLN ILE GLY GLY ASN ILE ALA TYR ILE VAL GLY LYS ASP SEQRES 3 B 321 ASN LEU ALA ASP VAL VAL LEU PHE ASP ILE ALA GLU GLY SEQRES 4 B 321 ILE PRO GLN GLY LYS ALA LEU ASP ILE THR HIS SER MET SEQRES 5 B 321 VAL MET PHE GLY SER THR SER LYS VAL ILE GLY THR ASN SEQRES 6 B 321 ASP TYR ALA ASP ILE SER GLY SER ASP VAL VAL ILE ILE SEQRES 7 B 321 THR ALA SER ILE PRO GLY ARG PRO LYS ASP ASP ARG SER SEQRES 8 B 321 GLU LEU LEU PHE GLY ASN ALA ARG ILE LEU ASP SER VAL SEQRES 9 B 321 ALA GLU GLY VAL LYS LYS TYR CYS PRO ASN ALA PHE VAL SEQRES 10 B 321 ILE CYS ILE THR ASN PRO LEU ASP VAL MET VAL SER HIS SEQRES 11 B 321 PHE GLN LYS VAL SER GLY LEU PRO HIS ASN LYS VAL CYS SEQRES 12 B 321 GLY MET ALA GLY VAL LEU ASP SER SER ARG PHE ARG THR SEQRES 13 B 321 PHE ILE ALA GLN HIS PHE GLY VAL ASN ALA SER ASP VAL SEQRES 14 B 321 SER ALA ASN VAL ILE GLY GLY HIS GLY ASP GLY MET VAL SEQRES 15 B 321 PRO ALA THR SER SER VAL SER VAL GLY GLY VAL PRO LEU SEQRES 16 B 321 SER SER PHE ILE LYS GLN GLY LEU ILE THR GLN GLU GLN SEQRES 17 B 321 ILE ASP GLU ILE VAL CYS HIS THR ARG ILE ALA TRP LYS SEQRES 18 B 321 GLU VAL ALA ASP ASN LEU LYS THR GLY THR ALA TYR PHE SEQRES 19 B 321 ALA PRO ALA ALA ALA ALA VAL LYS MET ALA GLU ALA TYR SEQRES 20 B 321 LEU LYS ASP LYS LYS ALA VAL VAL PRO CYS SER ALA PHE SEQRES 21 B 321 CYS SER ASN HIS TYR GLY VAL LYS GLY ILE TYR MET GLY SEQRES 22 B 321 VAL PRO THR ILE ILE GLY LYS ASN GLY VAL GLU ASP ILE SEQRES 23 B 321 LEU GLU LEU ASP LEU THR PRO LEU GLU GLN LYS LEU LEU SEQRES 24 B 321 GLY GLU SER ILE ASN GLU VAL ASN THR ILE SER LYS VAL SEQRES 25 B 321 LEU ASP ASN ALA PRO ALA ALA GLY ALA HET SO4 A 610 5 HET NAD A 400 44 HET OXM A 402 6 HET GOL A 600 6 HET GOL A 602 6 HET GOL A 603 6 HET SO4 B 611 5 HET NAD B 401 44 HET OXM B 403 6 HET GOL B 601 6 HET GOL B 604 6 HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM OXM OXAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 OXM 2(C2 H3 N O3) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 14 HOH *100(H2 O) HELIX 1 1 GLY A 29 ASP A 43 1 14 HELIX 2 2 GLY A 57 GLY A 73B 1 18 HELIX 3 3 ASP A 84 SER A 89 5 6 HELIX 4 4 ASP A 108 GLU A 111 5 4 HELIX 5 5 LEU A 112 CYS A 131 1 20 HELIX 6 6 PRO A 141 GLY A 154 1 14 HELIX 7 7 PRO A 156 ASN A 158 5 3 HELIX 8 8 ALA A 164 GLY A 181 1 18 HELIX 9 9 ASN A 183 SER A 185 5 3 HELIX 10 10 ALA A 202 SER A 205 5 4 HELIX 11 11 LEU A 210A GLN A 215 1 7 HELIX 12 12 THR A 220 ILE A 234 1 14 HELIX 13 13 ILE A 234 LYS A 243A 1 11 HELIX 14 14 TYR A 247 LYS A 263 1 17 HELIX 15 15 THR A 308 ASN A 331 1 24 HELIX 16 16 GLY B 29 ASN B 44 1 15 HELIX 17 17 GLY B 57 GLY B 73B 1 18 HELIX 18 18 ASP B 84 SER B 89 5 6 HELIX 19 19 LEU B 112 CYS B 131 1 20 HELIX 20 20 PRO B 141 GLY B 154 1 14 HELIX 21 21 PRO B 156 ASN B 158 5 3 HELIX 22 22 ALA B 164 GLY B 181 1 18 HELIX 23 23 ASN B 183 SER B 185 5 3 HELIX 24 24 LEU B 210A GLN B 215 1 7 HELIX 25 25 THR B 220 ILE B 234 1 14 HELIX 26 26 ILE B 234 LYS B 243A 1 11 HELIX 27 27 TYR B 247 LYS B 263 1 17 HELIX 28 28 THR B 308 ASN B 331 1 24 SHEET 1 A 6 VAL A 78 GLY A 80 0 SHEET 2 A 6 ASP A 47 PHE A 52 1 N LEU A 51 O ILE A 79 SHEET 3 A 6 LYS A 22 ILE A 26 1 N ILE A 23 O ASP A 47 SHEET 4 A 6 VAL A 93 ILE A 96 1 O ILE A 95 N ILE A 26 SHEET 5 A 6 PHE A 134 CYS A 137 1 O ILE A 136 N VAL A 94 SHEET 6 A 6 VAL A 160 GLY A 162 1 O CYS A 161 N CYS A 137 SHEET 1 B 3 VAL A 187 SER A 188 0 SHEET 2 B 3 SER A 207 VAL A 208 -1 O SER A 207 N SER A 188 SHEET 3 B 3 VAL A 209C PRO A 209D-1 O VAL A 209C N VAL A 208 SHEET 1 C 3 ALA A 267 CYS A 275 0 SHEET 2 C 3 ILE A 285 GLY A 294 -1 O VAL A 289 N CYS A 271 SHEET 3 C 3 GLY A 297 ILE A 302 -1 O GLU A 299 N ILE A 292 SHEET 1 D 6 VAL B 78 THR B 81 0 SHEET 2 D 6 ASP B 47 PHE B 52 1 N LEU B 51 O ILE B 79 SHEET 3 D 6 LYS B 22 ILE B 26 1 N ILE B 23 O ASP B 47 SHEET 4 D 6 VAL B 93 ILE B 96 1 O ILE B 95 N ALA B 24 SHEET 5 D 6 PHE B 134 CYS B 137 1 O ILE B 136 N ILE B 96 SHEET 6 D 6 VAL B 160 GLY B 162 1 O CYS B 161 N CYS B 137 SHEET 1 E 3 VAL B 187 GLY B 193 0 SHEET 2 E 3 MET B 199 VAL B 208 -1 O SER B 207 N SER B 188 SHEET 3 E 3 VAL B 209C PRO B 209D-1 O VAL B 209C N VAL B 208 SHEET 1 F 3 ALA B 267 CYS B 275 0 SHEET 2 F 3 ILE B 285 GLY B 294 -1 O VAL B 289 N CYS B 271 SHEET 3 F 3 GLY B 297 ILE B 302 -1 O GLU B 299 N ILE B 292 CISPEP 1 ASN A 140 PRO A 141 0 -0.31 CISPEP 2 ASN B 140 PRO B 141 0 -0.53 SITE 1 AC1 3 LYS A 256 LYS A 265 ASN B 183 SITE 1 AC2 4 ASN A 183 SER A 185 LYS B 256 LYS B 265 SITE 1 AC3 25 GLY A 27 GLY A 29 GLN A 30 ILE A 31 SITE 2 AC3 25 PHE A 52 ASP A 53 ILE A 54 ALA A 55 SITE 3 AC3 25 THR A 97 SER A 99 ILE A 119 ILE A 138 SITE 4 AC3 25 ASN A 140 MET A 163 LEU A 167 HIS A 195 SITE 5 AC3 25 GLU A 222 ALA A 246 PRO A 250 OXM A 402 SITE 6 AC3 25 HOH A 614 HOH A 625 HOH A 629 HOH A 675 SITE 7 AC3 25 HOH A 676 SITE 1 AC4 8 ARG A 109 ASN A 140 LEU A 167 ARG A 171 SITE 2 AC4 8 HIS A 195 TRP A 236 NAD A 400 HOH A 612 SITE 1 AC5 17 GLY B 29 GLN B 30 ILE B 31 ASP B 53 SITE 2 AC5 17 ALA B 55 THR B 97 SER B 99 ILE B 119 SITE 3 AC5 17 ILE B 138 ASN B 140 MET B 163 LEU B 167 SITE 4 AC5 17 THR B 245 ALA B 246 OXM B 403 HOH B 639 SITE 5 AC5 17 HOH B 641 SITE 1 AC6 8 ARG B 109 ASP B 168 ARG B 171 HIS B 195 SITE 2 AC6 8 GLY B 196 MET B 199 TRP B 236 NAD B 401 SITE 1 AC7 5 PRO A 201 THR A 203 VAL A 229 GLU A 311 SITE 2 AC7 5 LEU A 314 SITE 1 AC8 7 THR A 174 ALA A 184 THR B 67 MET B 70 SITE 2 AC8 7 VAL B 71 SER B 76 HOH B 636 SITE 1 AC9 6 PRO A 141 LEU A 142 ASP A 143 HIS A 195 SITE 2 AC9 6 VAL A 322 HOH A 626 SITE 1 BC1 6 THR A 203 SER A 210B GLN A 221 ILE A 225 SITE 2 BC1 6 HOH A 621 HOH A 672 SITE 1 BC2 7 ARG B 173 VAL B 187 SER B 188 ALA B 189 SITE 2 BC2 7 ASN B 190 VAL B 268 PRO B 270 CRYST1 95.080 95.080 185.120 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010517 0.006072 0.000000 0.00000 SCALE2 0.000000 0.012145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005402 0.00000