data_2FPD # _entry.id 2FPD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2FPD RCSB RCSB036148 WWPDB D_1000036148 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FPE 'DIFFERENT CRYSTAL FORM OF THE SAME PROTEIN' unspecified PDB 2FPF 'LONGER VARIANT OF THE SAME PROTEIN' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FPD _pdbx_database_status.recvd_initial_deposition_date 2006-01-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kristensen, O.' 1 'Dar, I.' 2 'Gajhede, M.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A unique set of SH3-SH3 interactions controls IB1 homodimerization' 'Embo J.' 25 785 797 2006 EMJODG UK 0261-4189 0897 ? 16456539 10.1038/sj.emboj.7600982 1 'A cytoplasmic inhibitor of the JNK signal transduction pathway' Science 277 693 696 1997 SCIEAS US 0036-8075 0038 ? 9235893 10.1126/science.277.5326.693 2 'IB1, a JIP-1-related nuclear protein present in insulin-secreting cells' J.Biol.Chem. 273 1843 1846 1998 JBCHA3 US 0021-9258 0071 ? 9442013 10.1074/jbc.273.4.1843 3 'Recruitment of JNK to JIP1 and JNK-dependent JIP1 phosphorylation regulates JNK module dynamics and activation' J.Biol.Chem. 278 28694 28702 2003 JBCHA3 US 0021-9258 0071 ? 12756254 10.1074/jbc.M304212200 4 'The JIP group of mitogen-activated protein kinase scaffold proteins' Mol.Cell.Biol. 19 7245 7254 1999 MCEBD4 US 0270-7306 2044 ? 10490659 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kristensen, O.' 1 ? primary 'Guenat, S.' 2 ? primary 'Dar, I.' 3 ? primary 'Allaman-Pillet, N.' 4 ? primary 'Abderrahmani, A.' 5 ? primary 'Ferdaoussi, M.' 6 ? primary 'Roduit, R.' 7 ? primary 'Maurer, F.' 8 ? primary 'Beckmann, J.S.' 9 ? primary 'Kastrup, J.S.' 10 ? primary 'Gajhede, M.' 11 ? primary 'Bonny, C.' 12 ? 1 'Dickens, M.' 13 ? 1 'Rogers, J.S.' 14 ? 1 'Cavanagh, J.' 15 ? 1 'Raitano, A.' 16 ? 1 'Xia, Z.' 17 ? 1 'Halpern, J.R.' 18 ? 1 'Greenberg, M.E.' 19 ? 1 'Sawyers, C.L.' 20 ? 1 'Davis, R.J.' 21 ? 2 'Bonny, C.' 22 ? 2 'Nicod, P.' 23 ? 2 'Waeber, G.' 24 ? 3 'Nihalani, D.' 25 ? 3 'Wong, H.N.' 26 ? 3 'Holzman, L.B.' 27 ? 4 'Yasuda, J.' 28 ? 4 'Whitmarsh, A.J.' 29 ? 4 'Cavanagh, J.' 30 ? 4 'Sharma, M.' 31 ? 4 'Davis, R.J.' 32 ? # _cell.entry_id 2FPD _cell.length_a 114.486 _cell.length_b 114.486 _cell.length_c 48.420 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FPD _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C-jun-amino-terminal kinase interacting protein 1' 7390.998 4 ? ? 'SH3 domain, residues 1-60' ? 2 branched man 'alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 water nat water 18.015 249 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;JNK-interacting protein 1, JIP-1, JNK MAP kinase scaffold protein 1, Islet-brain-1, IB-1, Mitogen-activated protein kinase 8-interacting protein 1, JIP-1-related protein, JRP ; 2 trehalose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GSEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYN(MSE)RTGARGVFPAYYAIEVTK' _entity_poly.pdbx_seq_one_letter_code_can GSEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLU n 1 4 GLN n 1 5 THR n 1 6 HIS n 1 7 ARG n 1 8 ALA n 1 9 ILE n 1 10 PHE n 1 11 ARG n 1 12 PHE n 1 13 VAL n 1 14 PRO n 1 15 ARG n 1 16 HIS n 1 17 GLU n 1 18 ASP n 1 19 GLU n 1 20 LEU n 1 21 GLU n 1 22 LEU n 1 23 GLU n 1 24 VAL n 1 25 ASP n 1 26 ASP n 1 27 PRO n 1 28 LEU n 1 29 LEU n 1 30 VAL n 1 31 GLU n 1 32 LEU n 1 33 GLN n 1 34 ALA n 1 35 GLU n 1 36 ASP n 1 37 TYR n 1 38 TRP n 1 39 TYR n 1 40 GLU n 1 41 ALA n 1 42 TYR n 1 43 ASN n 1 44 MSE n 1 45 ARG n 1 46 THR n 1 47 GLY n 1 48 ALA n 1 49 ARG n 1 50 GLY n 1 51 VAL n 1 52 PHE n 1 53 PRO n 1 54 ALA n 1 55 TYR n 1 56 TYR n 1 57 ALA n 1 58 ILE n 1 59 GLU n 1 60 VAL n 1 61 THR n 1 62 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene 'Mapk8ip1, Ib1, Jip1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'ROSETTA BL21(DE3)PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PGEX 4T-1' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code JIP1_RAT _struct_ref.pdbx_db_accession Q9R237 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK _struct_ref.pdbx_align_begin 487 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2FPD A 3 ? 62 ? Q9R237 487 ? 546 ? 1 60 2 1 2FPD B 3 ? 62 ? Q9R237 487 ? 546 ? 1 60 3 1 2FPD C 3 ? 62 ? Q9R237 487 ? 546 ? 1 60 4 1 2FPD D 3 ? 62 ? Q9R237 487 ? 546 ? 1 60 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FPD GLY A 1 ? UNP Q9R237 ? ? 'cloning artifact' -1 1 1 2FPD SER A 2 ? UNP Q9R237 ? ? 'cloning artifact' 0 2 1 2FPD MSE A 44 ? UNP Q9R237 MET 528 'modified residue' 42 3 2 2FPD GLY B 1 ? UNP Q9R237 ? ? 'cloning artifact' -1 4 2 2FPD SER B 2 ? UNP Q9R237 ? ? 'cloning artifact' 0 5 2 2FPD MSE B 44 ? UNP Q9R237 MET 528 'modified residue' 42 6 3 2FPD GLY C 1 ? UNP Q9R237 ? ? 'cloning artifact' -1 7 3 2FPD SER C 2 ? UNP Q9R237 ? ? 'cloning artifact' 0 8 3 2FPD MSE C 44 ? UNP Q9R237 MET 528 'modified residue' 42 9 4 2FPD GLY D 1 ? UNP Q9R237 ? ? 'cloning artifact' -1 10 4 2FPD SER D 2 ? UNP Q9R237 ? ? 'cloning artifact' 0 11 4 2FPD MSE D 44 ? UNP Q9R237 MET 528 'modified residue' 42 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2FPD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.00 _exptl_crystal_grow.pdbx_details 'AMMONIUM SULFATE, BICINE, pH 9.00, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-09-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'BENDABLE ASYMMETRICALLY CUT SI(111) CRYSTAL IN COMBINATION WITH VERTICALLY FOCUSING MIRROR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.967 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I711' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I711 _diffrn_source.pdbx_wavelength 0.967 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2FPD _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.000 _reflns.d_resolution_high 2.050 _reflns.number_obs 37925 _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI 7.7000 _reflns.B_iso_Wilson_estimate 21.50 _reflns.pdbx_redundancy 8.020 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.16 _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_obs 0.34 _reflns_shell.pdbx_Rsym_value 0.34 _reflns_shell.meanI_over_sigI_obs 2.280 _reflns_shell.pdbx_redundancy 8.24 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2FPD _refine.ls_number_reflns_obs 37925 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 1632143.920 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.64 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1947 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.50 _refine.aniso_B[1][1] 0.98000 _refine.aniso_B[2][2] 0.82000 _refine.aniso_B[3][3] -1.80000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.42 _refine.solvent_model_param_bsol 49.59 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'EXPERIMENTAL PHASES WERE USED THROUGHOUT IN THE REFINEMENT, WHICH WAS BASED ON THE MLHL TARGET FUNCTION.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2FPD _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2100 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 249 _refine_hist.number_atoms_total 2382 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 24.64 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.40 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.50 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.71 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 2.05 _refine_ls_shell.d_res_low 2.16 _refine_ls_shell.number_reflns_R_work 5051 _refine_ls_shell.R_factor_R_work 0.191 _refine_ls_shell.percent_reflns_obs 97.30 _refine_ls_shell.R_factor_R_free 0.248 _refine_ls_shell.R_factor_R_free_error 0.014 _refine_ls_shell.percent_reflns_R_free 5.70 _refine_ls_shell.number_reflns_R_free 303 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 TRE_XPLOR_PARAM.TXT TRE_XPLOR_TOP.TXT 'X-RAY DIFFRACTION' # _struct.entry_id 2FPD _struct.title 'Sad structure determination: crystal structure of the intrinsic dimerization sh3 domain of the ib1 scaffold protein' _struct.pdbx_descriptor 'C-jun-amino-terminal kinase interacting protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FPD _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SRC-HOMOLOGY 3 (SH3) DOMAIN, ALL BETA STRUCTURE, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 43 C ? ? ? 1_555 A MSE 44 N ? ? A ASN 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 44 C ? ? ? 1_555 A ARG 45 N ? ? A MSE 42 A ARG 43 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? B ASN 43 C ? ? ? 1_555 B MSE 44 N ? ? B ASN 41 B MSE 42 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? B MSE 44 C ? ? ? 1_555 B ARG 45 N ? ? B MSE 42 B ARG 43 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? C ASN 43 C ? ? ? 1_555 C MSE 44 N ? ? C ASN 41 C MSE 42 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? C MSE 44 C ? ? ? 1_555 C ARG 45 N ? ? C MSE 42 C ARG 43 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? D ASN 43 C ? ? ? 1_555 D MSE 44 N ? ? D ASN 41 D MSE 42 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? D MSE 44 C ? ? ? 1_555 D ARG 45 N ? ? D MSE 42 D ARG 43 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? E GLC . C1 ? ? ? 1_555 E GLC . O1 ? ? E GLC 1 E GLC 2 1_555 ? ? ? ? ? ? ? 1.397 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 49 ? PRO A 53 ? ARG A 47 PRO A 51 A 2 TRP A 38 ? ASN A 43 ? TRP A 36 ASN A 41 A 3 PRO A 27 ? GLN A 33 ? PRO A 25 GLN A 31 A 4 HIS A 6 ? ALA A 8 ? HIS A 4 ALA A 6 A 5 ALA A 57 ? GLU A 59 ? ALA A 55 GLU A 57 B 1 ARG B 49 ? PRO B 53 ? ARG B 47 PRO B 51 B 2 TRP B 38 ? ASN B 43 ? TRP B 36 ASN B 41 B 3 PRO B 27 ? GLN B 33 ? PRO B 25 GLN B 31 B 4 HIS B 6 ? ALA B 8 ? HIS B 4 ALA B 6 B 5 ALA B 57 ? GLU B 59 ? ALA B 55 GLU B 57 C 1 ARG C 49 ? PRO C 53 ? ARG C 47 PRO C 51 C 2 TRP C 38 ? ASN C 43 ? TRP C 36 ASN C 41 C 3 PRO C 27 ? GLN C 33 ? PRO C 25 GLN C 31 C 4 HIS C 6 ? ALA C 8 ? HIS C 4 ALA C 6 C 5 ALA C 57 ? GLU C 59 ? ALA C 55 GLU C 57 D 1 ARG D 49 ? PRO D 53 ? ARG D 47 PRO D 51 D 2 TRP D 38 ? ASN D 43 ? TRP D 36 ASN D 41 D 3 PRO D 27 ? VAL D 30 ? PRO D 25 VAL D 28 D 4 HIS D 6 ? ALA D 8 ? HIS D 4 ALA D 6 D 5 ALA D 57 ? GLU D 59 ? ALA D 55 GLU D 57 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 50 ? O GLY A 48 N ALA A 41 ? N ALA A 39 A 2 3 O GLU A 40 ? O GLU A 38 N LEU A 32 ? N LEU A 30 A 3 4 O LEU A 28 ? O LEU A 26 N HIS A 6 ? N HIS A 4 A 4 5 N ARG A 7 ? N ARG A 5 O ILE A 58 ? O ILE A 56 B 1 2 O GLY B 50 ? O GLY B 48 N ALA B 41 ? N ALA B 39 B 2 3 O GLU B 40 ? O GLU B 38 N LEU B 32 ? N LEU B 30 B 3 4 O LEU B 28 ? O LEU B 26 N HIS B 6 ? N HIS B 4 B 4 5 N ARG B 7 ? N ARG B 5 O ILE B 58 ? O ILE B 56 C 1 2 O GLY C 50 ? O GLY C 48 N ALA C 41 ? N ALA C 39 C 2 3 O GLU C 40 ? O GLU C 38 N LEU C 32 ? N LEU C 30 C 3 4 O LEU C 28 ? O LEU C 26 N HIS C 6 ? N HIS C 4 C 4 5 N ARG C 7 ? N ARG C 5 O ILE C 58 ? O ILE C 56 D 1 2 O GLY D 50 ? O GLY D 48 N ALA D 41 ? N ALA D 39 D 2 3 O TYR D 42 ? O TYR D 40 N LEU D 29 ? N LEU D 27 D 3 4 O LEU D 28 ? O LEU D 26 N HIS D 6 ? N HIS D 4 D 4 5 N ARG D 7 ? N ARG D 5 O ILE D 58 ? O ILE D 56 # _database_PDB_matrix.entry_id 2FPD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FPD _atom_sites.fract_transf_matrix[1][1] 0.008735 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008735 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020653 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 -1 GLY GLY A . n A 1 2 SER 2 0 0 SER SER A . n A 1 3 GLU 3 1 1 GLU GLU A . n A 1 4 GLN 4 2 2 GLN GLN A . n A 1 5 THR 5 3 3 THR THR A . n A 1 6 HIS 6 4 4 HIS HIS A . n A 1 7 ARG 7 5 5 ARG ARG A . n A 1 8 ALA 8 6 6 ALA ALA A . n A 1 9 ILE 9 7 7 ILE ILE A . n A 1 10 PHE 10 8 8 PHE PHE A . n A 1 11 ARG 11 9 9 ARG ARG A . n A 1 12 PHE 12 10 10 PHE PHE A . n A 1 13 VAL 13 11 11 VAL VAL A . n A 1 14 PRO 14 12 12 PRO PRO A . n A 1 15 ARG 15 13 13 ARG ARG A . n A 1 16 HIS 16 14 14 HIS HIS A . n A 1 17 GLU 17 15 15 GLU GLU A . n A 1 18 ASP 18 16 16 ASP ASP A . n A 1 19 GLU 19 17 17 GLU GLU A . n A 1 20 LEU 20 18 18 LEU LEU A . n A 1 21 GLU 21 19 19 GLU GLU A . n A 1 22 LEU 22 20 20 LEU LEU A . n A 1 23 GLU 23 21 21 GLU GLU A . n A 1 24 VAL 24 22 22 VAL VAL A . n A 1 25 ASP 25 23 23 ASP ASP A . n A 1 26 ASP 26 24 24 ASP ASP A . n A 1 27 PRO 27 25 25 PRO PRO A . n A 1 28 LEU 28 26 26 LEU LEU A . n A 1 29 LEU 29 27 27 LEU LEU A . n A 1 30 VAL 30 28 28 VAL VAL A . n A 1 31 GLU 31 29 29 GLU GLU A . n A 1 32 LEU 32 30 30 LEU LEU A . n A 1 33 GLN 33 31 31 GLN GLN A . n A 1 34 ALA 34 32 32 ALA ALA A . n A 1 35 GLU 35 33 33 GLU GLU A . n A 1 36 ASP 36 34 34 ASP ASP A . n A 1 37 TYR 37 35 35 TYR TYR A . n A 1 38 TRP 38 36 36 TRP TRP A . n A 1 39 TYR 39 37 37 TYR TYR A . n A 1 40 GLU 40 38 38 GLU GLU A . n A 1 41 ALA 41 39 39 ALA ALA A . n A 1 42 TYR 42 40 40 TYR TYR A . n A 1 43 ASN 43 41 41 ASN ASN A . n A 1 44 MSE 44 42 42 MSE MSE A . n A 1 45 ARG 45 43 43 ARG ARG A . n A 1 46 THR 46 44 44 THR THR A . n A 1 47 GLY 47 45 45 GLY GLY A . n A 1 48 ALA 48 46 46 ALA ALA A . n A 1 49 ARG 49 47 47 ARG ARG A . n A 1 50 GLY 50 48 48 GLY GLY A . n A 1 51 VAL 51 49 49 VAL VAL A . n A 1 52 PHE 52 50 50 PHE PHE A . n A 1 53 PRO 53 51 51 PRO PRO A . n A 1 54 ALA 54 52 52 ALA ALA A . n A 1 55 TYR 55 53 53 TYR TYR A . n A 1 56 TYR 56 54 54 TYR TYR A . n A 1 57 ALA 57 55 55 ALA ALA A . n A 1 58 ILE 58 56 56 ILE ILE A . n A 1 59 GLU 59 57 57 GLU GLU A . n A 1 60 VAL 60 58 58 VAL VAL A . n A 1 61 THR 61 59 59 THR THR A . n A 1 62 LYS 62 60 60 LYS LYS A . n B 1 1 GLY 1 -1 -1 GLY GLY B . n B 1 2 SER 2 0 0 SER SER B . n B 1 3 GLU 3 1 1 GLU GLU B . n B 1 4 GLN 4 2 2 GLN GLN B . n B 1 5 THR 5 3 3 THR THR B . n B 1 6 HIS 6 4 4 HIS HIS B . n B 1 7 ARG 7 5 5 ARG ARG B . n B 1 8 ALA 8 6 6 ALA ALA B . n B 1 9 ILE 9 7 7 ILE ILE B . n B 1 10 PHE 10 8 8 PHE PHE B . n B 1 11 ARG 11 9 9 ARG ARG B . n B 1 12 PHE 12 10 10 PHE PHE B . n B 1 13 VAL 13 11 11 VAL VAL B . n B 1 14 PRO 14 12 12 PRO PRO B . n B 1 15 ARG 15 13 13 ARG ARG B . n B 1 16 HIS 16 14 14 HIS HIS B . n B 1 17 GLU 17 15 15 GLU GLU B . n B 1 18 ASP 18 16 16 ASP ASP B . n B 1 19 GLU 19 17 17 GLU GLU B . n B 1 20 LEU 20 18 18 LEU LEU B . n B 1 21 GLU 21 19 19 GLU GLU B . n B 1 22 LEU 22 20 20 LEU LEU B . n B 1 23 GLU 23 21 21 GLU GLU B . n B 1 24 VAL 24 22 22 VAL VAL B . n B 1 25 ASP 25 23 23 ASP ASP B . n B 1 26 ASP 26 24 24 ASP ASP B . n B 1 27 PRO 27 25 25 PRO PRO B . n B 1 28 LEU 28 26 26 LEU LEU B . n B 1 29 LEU 29 27 27 LEU LEU B . n B 1 30 VAL 30 28 28 VAL VAL B . n B 1 31 GLU 31 29 29 GLU GLU B . n B 1 32 LEU 32 30 30 LEU LEU B . n B 1 33 GLN 33 31 31 GLN GLN B . n B 1 34 ALA 34 32 32 ALA ALA B . n B 1 35 GLU 35 33 33 GLU GLU B . n B 1 36 ASP 36 34 34 ASP ASP B . n B 1 37 TYR 37 35 35 TYR TYR B . n B 1 38 TRP 38 36 36 TRP TRP B . n B 1 39 TYR 39 37 37 TYR TYR B . n B 1 40 GLU 40 38 38 GLU GLU B . n B 1 41 ALA 41 39 39 ALA ALA B . n B 1 42 TYR 42 40 40 TYR TYR B . n B 1 43 ASN 43 41 41 ASN ASN B . n B 1 44 MSE 44 42 42 MSE MSE B . n B 1 45 ARG 45 43 43 ARG ARG B . n B 1 46 THR 46 44 44 THR THR B . n B 1 47 GLY 47 45 45 GLY GLY B . n B 1 48 ALA 48 46 46 ALA ALA B . n B 1 49 ARG 49 47 47 ARG ARG B . n B 1 50 GLY 50 48 48 GLY GLY B . n B 1 51 VAL 51 49 49 VAL VAL B . n B 1 52 PHE 52 50 50 PHE PHE B . n B 1 53 PRO 53 51 51 PRO PRO B . n B 1 54 ALA 54 52 52 ALA ALA B . n B 1 55 TYR 55 53 53 TYR TYR B . n B 1 56 TYR 56 54 54 TYR TYR B . n B 1 57 ALA 57 55 55 ALA ALA B . n B 1 58 ILE 58 56 56 ILE ILE B . n B 1 59 GLU 59 57 57 GLU GLU B . n B 1 60 VAL 60 58 58 VAL VAL B . n B 1 61 THR 61 59 59 THR THR B . n B 1 62 LYS 62 60 60 LYS LYS B . n C 1 1 GLY 1 -1 -1 GLY GLY C . n C 1 2 SER 2 0 0 SER SER C . n C 1 3 GLU 3 1 1 GLU GLU C . n C 1 4 GLN 4 2 2 GLN GLN C . n C 1 5 THR 5 3 3 THR THR C . n C 1 6 HIS 6 4 4 HIS HIS C . n C 1 7 ARG 7 5 5 ARG ARG C . n C 1 8 ALA 8 6 6 ALA ALA C . n C 1 9 ILE 9 7 7 ILE ILE C . n C 1 10 PHE 10 8 8 PHE PHE C . n C 1 11 ARG 11 9 9 ARG ARG C . n C 1 12 PHE 12 10 10 PHE PHE C . n C 1 13 VAL 13 11 11 VAL VAL C . n C 1 14 PRO 14 12 12 PRO PRO C . n C 1 15 ARG 15 13 13 ARG ARG C . n C 1 16 HIS 16 14 14 HIS HIS C . n C 1 17 GLU 17 15 15 GLU GLU C . n C 1 18 ASP 18 16 16 ASP ASP C . n C 1 19 GLU 19 17 17 GLU GLU C . n C 1 20 LEU 20 18 18 LEU LEU C . n C 1 21 GLU 21 19 19 GLU GLU C . n C 1 22 LEU 22 20 20 LEU LEU C . n C 1 23 GLU 23 21 21 GLU GLU C . n C 1 24 VAL 24 22 22 VAL VAL C . n C 1 25 ASP 25 23 23 ASP ASP C . n C 1 26 ASP 26 24 24 ASP ASP C . n C 1 27 PRO 27 25 25 PRO PRO C . n C 1 28 LEU 28 26 26 LEU LEU C . n C 1 29 LEU 29 27 27 LEU LEU C . n C 1 30 VAL 30 28 28 VAL VAL C . n C 1 31 GLU 31 29 29 GLU GLU C . n C 1 32 LEU 32 30 30 LEU LEU C . n C 1 33 GLN 33 31 31 GLN GLN C . n C 1 34 ALA 34 32 32 ALA ALA C . n C 1 35 GLU 35 33 33 GLU GLU C . n C 1 36 ASP 36 34 34 ASP ASP C . n C 1 37 TYR 37 35 35 TYR TYR C . n C 1 38 TRP 38 36 36 TRP TRP C . n C 1 39 TYR 39 37 37 TYR TYR C . n C 1 40 GLU 40 38 38 GLU GLU C . n C 1 41 ALA 41 39 39 ALA ALA C . n C 1 42 TYR 42 40 40 TYR TYR C . n C 1 43 ASN 43 41 41 ASN ASN C . n C 1 44 MSE 44 42 42 MSE MSE C . n C 1 45 ARG 45 43 43 ARG ARG C . n C 1 46 THR 46 44 44 THR THR C . n C 1 47 GLY 47 45 45 GLY GLY C . n C 1 48 ALA 48 46 46 ALA ALA C . n C 1 49 ARG 49 47 47 ARG ARG C . n C 1 50 GLY 50 48 48 GLY GLY C . n C 1 51 VAL 51 49 49 VAL VAL C . n C 1 52 PHE 52 50 50 PHE PHE C . n C 1 53 PRO 53 51 51 PRO PRO C . n C 1 54 ALA 54 52 52 ALA ALA C . n C 1 55 TYR 55 53 53 TYR TYR C . n C 1 56 TYR 56 54 54 TYR TYR C . n C 1 57 ALA 57 55 55 ALA ALA C . n C 1 58 ILE 58 56 56 ILE ILE C . n C 1 59 GLU 59 57 57 GLU GLU C . n C 1 60 VAL 60 58 58 VAL VAL C . n C 1 61 THR 61 59 59 THR THR C . n C 1 62 LYS 62 60 60 LYS LYS C . n D 1 1 GLY 1 -1 -1 GLY GLY D . n D 1 2 SER 2 0 0 SER SER D . n D 1 3 GLU 3 1 1 GLU GLU D . n D 1 4 GLN 4 2 2 GLN GLN D . n D 1 5 THR 5 3 3 THR THR D . n D 1 6 HIS 6 4 4 HIS HIS D . n D 1 7 ARG 7 5 5 ARG ARG D . n D 1 8 ALA 8 6 6 ALA ALA D . n D 1 9 ILE 9 7 7 ILE ILE D . n D 1 10 PHE 10 8 8 PHE PHE D . n D 1 11 ARG 11 9 9 ARG ARG D . n D 1 12 PHE 12 10 10 PHE PHE D . n D 1 13 VAL 13 11 11 VAL VAL D . n D 1 14 PRO 14 12 12 PRO PRO D . n D 1 15 ARG 15 13 13 ARG ARG D . n D 1 16 HIS 16 14 14 HIS HIS D . n D 1 17 GLU 17 15 15 GLU GLU D . n D 1 18 ASP 18 16 16 ASP ASP D . n D 1 19 GLU 19 17 17 GLU GLU D . n D 1 20 LEU 20 18 18 LEU LEU D . n D 1 21 GLU 21 19 19 GLU GLU D . n D 1 22 LEU 22 20 20 LEU LEU D . n D 1 23 GLU 23 21 21 GLU GLU D . n D 1 24 VAL 24 22 22 VAL VAL D . n D 1 25 ASP 25 23 23 ASP ASP D . n D 1 26 ASP 26 24 24 ASP ASP D . n D 1 27 PRO 27 25 25 PRO PRO D . n D 1 28 LEU 28 26 26 LEU LEU D . n D 1 29 LEU 29 27 27 LEU LEU D . n D 1 30 VAL 30 28 28 VAL VAL D . n D 1 31 GLU 31 29 29 GLU GLU D . n D 1 32 LEU 32 30 30 LEU LEU D . n D 1 33 GLN 33 31 31 GLN GLN D . n D 1 34 ALA 34 32 32 ALA ALA D . n D 1 35 GLU 35 33 33 GLU GLU D . n D 1 36 ASP 36 34 34 ASP ASP D . n D 1 37 TYR 37 35 35 TYR TYR D . n D 1 38 TRP 38 36 36 TRP TRP D . n D 1 39 TYR 39 37 37 TYR TYR D . n D 1 40 GLU 40 38 38 GLU GLU D . n D 1 41 ALA 41 39 39 ALA ALA D . n D 1 42 TYR 42 40 40 TYR TYR D . n D 1 43 ASN 43 41 41 ASN ASN D . n D 1 44 MSE 44 42 42 MSE MSE D . n D 1 45 ARG 45 43 43 ARG ARG D . n D 1 46 THR 46 44 44 THR THR D . n D 1 47 GLY 47 45 45 GLY GLY D . n D 1 48 ALA 48 46 46 ALA ALA D . n D 1 49 ARG 49 47 47 ARG ARG D . n D 1 50 GLY 50 48 48 GLY GLY D . n D 1 51 VAL 51 49 49 VAL VAL D . n D 1 52 PHE 52 50 50 PHE PHE D . n D 1 53 PRO 53 51 51 PRO PRO D . n D 1 54 ALA 54 52 52 ALA ALA D . n D 1 55 TYR 55 53 53 TYR TYR D . n D 1 56 TYR 56 54 54 TYR TYR D . n D 1 57 ALA 57 55 55 ALA ALA D . n D 1 58 ILE 58 56 56 ILE ILE D . n D 1 59 GLU 59 57 57 GLU GLU D . n D 1 60 VAL 60 58 58 VAL VAL D . n D 1 61 THR 61 59 59 THR THR D . n D 1 62 LYS 62 60 60 LYS LYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 SO4 1 1003 1003 SO4 SO4 C . G 3 SO4 1 1002 1002 SO4 SO4 D . H 4 HOH 1 61 11 HOH HOH A . H 4 HOH 2 62 17 HOH HOH A . H 4 HOH 3 63 21 HOH HOH A . H 4 HOH 4 64 28 HOH HOH A . H 4 HOH 5 65 29 HOH HOH A . H 4 HOH 6 66 31 HOH HOH A . H 4 HOH 7 67 39 HOH HOH A . H 4 HOH 8 68 43 HOH HOH A . H 4 HOH 9 69 44 HOH HOH A . H 4 HOH 10 70 46 HOH HOH A . H 4 HOH 11 71 48 HOH HOH A . H 4 HOH 12 72 51 HOH HOH A . H 4 HOH 13 73 55 HOH HOH A . H 4 HOH 14 74 59 HOH HOH A . H 4 HOH 15 75 60 HOH HOH A . H 4 HOH 16 76 64 HOH HOH A . H 4 HOH 17 77 66 HOH HOH A . H 4 HOH 18 78 68 HOH HOH A . H 4 HOH 19 79 70 HOH HOH A . H 4 HOH 20 80 79 HOH HOH A . H 4 HOH 21 81 87 HOH HOH A . H 4 HOH 22 82 97 HOH HOH A . H 4 HOH 23 83 110 HOH HOH A . H 4 HOH 24 84 115 HOH HOH A . H 4 HOH 25 85 117 HOH HOH A . H 4 HOH 26 86 121 HOH HOH A . H 4 HOH 27 87 123 HOH HOH A . H 4 HOH 28 88 124 HOH HOH A . H 4 HOH 29 89 125 HOH HOH A . H 4 HOH 30 90 127 HOH HOH A . H 4 HOH 31 91 129 HOH HOH A . H 4 HOH 32 92 135 HOH HOH A . H 4 HOH 33 93 136 HOH HOH A . H 4 HOH 34 94 150 HOH HOH A . H 4 HOH 35 95 156 HOH HOH A . H 4 HOH 36 96 159 HOH HOH A . H 4 HOH 37 97 160 HOH HOH A . H 4 HOH 38 98 161 HOH HOH A . H 4 HOH 39 99 162 HOH HOH A . H 4 HOH 40 100 165 HOH HOH A . H 4 HOH 41 101 173 HOH HOH A . H 4 HOH 42 102 175 HOH HOH A . H 4 HOH 43 103 180 HOH HOH A . H 4 HOH 44 104 186 HOH HOH A . H 4 HOH 45 105 194 HOH HOH A . H 4 HOH 46 106 205 HOH HOH A . H 4 HOH 47 107 211 HOH HOH A . H 4 HOH 48 108 213 HOH HOH A . H 4 HOH 49 109 221 HOH HOH A . H 4 HOH 50 110 232 HOH HOH A . H 4 HOH 51 111 234 HOH HOH A . H 4 HOH 52 112 235 HOH HOH A . H 4 HOH 53 113 240 HOH HOH A . H 4 HOH 54 114 242 HOH HOH A . H 4 HOH 55 115 244 HOH HOH A . H 4 HOH 56 116 246 HOH HOH A . H 4 HOH 57 117 249 HOH HOH A . I 4 HOH 1 61 2 HOH HOH B . I 4 HOH 2 62 4 HOH HOH B . I 4 HOH 3 63 5 HOH HOH B . I 4 HOH 4 64 7 HOH HOH B . I 4 HOH 5 65 8 HOH HOH B . I 4 HOH 6 66 10 HOH HOH B . I 4 HOH 7 67 13 HOH HOH B . I 4 HOH 8 68 18 HOH HOH B . I 4 HOH 9 69 25 HOH HOH B . I 4 HOH 10 70 26 HOH HOH B . I 4 HOH 11 71 33 HOH HOH B . I 4 HOH 12 72 34 HOH HOH B . I 4 HOH 13 73 35 HOH HOH B . I 4 HOH 14 74 40 HOH HOH B . I 4 HOH 15 75 49 HOH HOH B . I 4 HOH 16 76 52 HOH HOH B . I 4 HOH 17 77 53 HOH HOH B . I 4 HOH 18 78 54 HOH HOH B . I 4 HOH 19 79 57 HOH HOH B . I 4 HOH 20 80 58 HOH HOH B . I 4 HOH 21 81 69 HOH HOH B . I 4 HOH 22 82 74 HOH HOH B . I 4 HOH 23 83 76 HOH HOH B . I 4 HOH 24 84 82 HOH HOH B . I 4 HOH 25 85 85 HOH HOH B . I 4 HOH 26 86 88 HOH HOH B . I 4 HOH 27 87 90 HOH HOH B . I 4 HOH 28 88 92 HOH HOH B . I 4 HOH 29 89 93 HOH HOH B . I 4 HOH 30 90 94 HOH HOH B . I 4 HOH 31 91 96 HOH HOH B . I 4 HOH 32 92 98 HOH HOH B . I 4 HOH 33 93 102 HOH HOH B . I 4 HOH 34 94 105 HOH HOH B . I 4 HOH 35 95 113 HOH HOH B . I 4 HOH 36 96 114 HOH HOH B . I 4 HOH 37 97 116 HOH HOH B . I 4 HOH 38 98 119 HOH HOH B . I 4 HOH 39 99 128 HOH HOH B . I 4 HOH 40 100 131 HOH HOH B . I 4 HOH 41 101 133 HOH HOH B . I 4 HOH 42 102 139 HOH HOH B . I 4 HOH 43 103 140 HOH HOH B . I 4 HOH 44 104 141 HOH HOH B . I 4 HOH 45 105 147 HOH HOH B . I 4 HOH 46 106 157 HOH HOH B . I 4 HOH 47 107 164 HOH HOH B . I 4 HOH 48 108 166 HOH HOH B . I 4 HOH 49 109 171 HOH HOH B . I 4 HOH 50 110 174 HOH HOH B . I 4 HOH 51 111 177 HOH HOH B . I 4 HOH 52 112 185 HOH HOH B . I 4 HOH 53 113 187 HOH HOH B . I 4 HOH 54 114 188 HOH HOH B . I 4 HOH 55 115 190 HOH HOH B . I 4 HOH 56 116 192 HOH HOH B . I 4 HOH 57 117 195 HOH HOH B . I 4 HOH 58 118 196 HOH HOH B . I 4 HOH 59 119 197 HOH HOH B . I 4 HOH 60 120 198 HOH HOH B . I 4 HOH 61 121 201 HOH HOH B . I 4 HOH 62 122 202 HOH HOH B . I 4 HOH 63 123 203 HOH HOH B . I 4 HOH 64 124 206 HOH HOH B . I 4 HOH 65 125 209 HOH HOH B . I 4 HOH 66 126 215 HOH HOH B . I 4 HOH 67 127 216 HOH HOH B . I 4 HOH 68 128 217 HOH HOH B . I 4 HOH 69 129 218 HOH HOH B . I 4 HOH 70 130 219 HOH HOH B . I 4 HOH 71 131 220 HOH HOH B . I 4 HOH 72 132 239 HOH HOH B . I 4 HOH 73 133 241 HOH HOH B . I 4 HOH 74 134 245 HOH HOH B . I 4 HOH 75 135 247 HOH HOH B . J 4 HOH 1 1004 9 HOH HOH C . J 4 HOH 2 1005 12 HOH HOH C . J 4 HOH 3 1006 15 HOH HOH C . J 4 HOH 4 1007 19 HOH HOH C . J 4 HOH 5 1008 23 HOH HOH C . J 4 HOH 6 1009 24 HOH HOH C . J 4 HOH 7 1010 27 HOH HOH C . J 4 HOH 8 1011 30 HOH HOH C . J 4 HOH 9 1012 32 HOH HOH C . J 4 HOH 10 1013 37 HOH HOH C . J 4 HOH 11 1014 38 HOH HOH C . J 4 HOH 12 1015 47 HOH HOH C . J 4 HOH 13 1016 50 HOH HOH C . J 4 HOH 14 1017 61 HOH HOH C . J 4 HOH 15 1018 63 HOH HOH C . J 4 HOH 16 1019 65 HOH HOH C . J 4 HOH 17 1020 67 HOH HOH C . J 4 HOH 18 1021 71 HOH HOH C . J 4 HOH 19 1022 72 HOH HOH C . J 4 HOH 20 1023 77 HOH HOH C . J 4 HOH 21 1024 84 HOH HOH C . J 4 HOH 22 1025 99 HOH HOH C . J 4 HOH 23 1026 103 HOH HOH C . J 4 HOH 24 1027 108 HOH HOH C . J 4 HOH 25 1028 109 HOH HOH C . J 4 HOH 26 1029 112 HOH HOH C . J 4 HOH 27 1030 120 HOH HOH C . J 4 HOH 28 1031 122 HOH HOH C . J 4 HOH 29 1032 130 HOH HOH C . J 4 HOH 30 1033 132 HOH HOH C . J 4 HOH 31 1034 134 HOH HOH C . J 4 HOH 32 1035 142 HOH HOH C . J 4 HOH 33 1036 143 HOH HOH C . J 4 HOH 34 1037 144 HOH HOH C . J 4 HOH 35 1038 145 HOH HOH C . J 4 HOH 36 1039 149 HOH HOH C . J 4 HOH 37 1040 151 HOH HOH C . J 4 HOH 38 1041 152 HOH HOH C . J 4 HOH 39 1042 153 HOH HOH C . J 4 HOH 40 1043 163 HOH HOH C . J 4 HOH 41 1044 167 HOH HOH C . J 4 HOH 42 1045 168 HOH HOH C . J 4 HOH 43 1046 169 HOH HOH C . J 4 HOH 44 1047 170 HOH HOH C . J 4 HOH 45 1048 172 HOH HOH C . J 4 HOH 46 1049 179 HOH HOH C . J 4 HOH 47 1050 181 HOH HOH C . J 4 HOH 48 1051 183 HOH HOH C . J 4 HOH 49 1052 189 HOH HOH C . J 4 HOH 50 1053 191 HOH HOH C . J 4 HOH 51 1054 199 HOH HOH C . J 4 HOH 52 1055 204 HOH HOH C . J 4 HOH 53 1056 207 HOH HOH C . J 4 HOH 54 1057 208 HOH HOH C . J 4 HOH 55 1058 212 HOH HOH C . J 4 HOH 56 1059 214 HOH HOH C . J 4 HOH 57 1060 222 HOH HOH C . J 4 HOH 58 1061 224 HOH HOH C . J 4 HOH 59 1062 225 HOH HOH C . J 4 HOH 60 1063 227 HOH HOH C . J 4 HOH 61 1064 230 HOH HOH C . J 4 HOH 62 1065 237 HOH HOH C . J 4 HOH 63 1066 243 HOH HOH C . K 4 HOH 1 1003 1 HOH HOH D . K 4 HOH 2 1004 3 HOH HOH D . K 4 HOH 3 1005 6 HOH HOH D . K 4 HOH 4 1006 14 HOH HOH D . K 4 HOH 5 1007 16 HOH HOH D . K 4 HOH 6 1008 20 HOH HOH D . K 4 HOH 7 1009 22 HOH HOH D . K 4 HOH 8 1010 36 HOH HOH D . K 4 HOH 9 1011 41 HOH HOH D . K 4 HOH 10 1012 42 HOH HOH D . K 4 HOH 11 1013 45 HOH HOH D . K 4 HOH 12 1014 56 HOH HOH D . K 4 HOH 13 1015 62 HOH HOH D . K 4 HOH 14 1016 73 HOH HOH D . K 4 HOH 15 1017 75 HOH HOH D . K 4 HOH 16 1018 78 HOH HOH D . K 4 HOH 17 1019 80 HOH HOH D . K 4 HOH 18 1020 81 HOH HOH D . K 4 HOH 19 1021 83 HOH HOH D . K 4 HOH 20 1022 86 HOH HOH D . K 4 HOH 21 1023 89 HOH HOH D . K 4 HOH 22 1024 91 HOH HOH D . K 4 HOH 23 1025 95 HOH HOH D . K 4 HOH 24 1026 100 HOH HOH D . K 4 HOH 25 1027 101 HOH HOH D . K 4 HOH 26 1028 104 HOH HOH D . K 4 HOH 27 1029 106 HOH HOH D . K 4 HOH 28 1030 107 HOH HOH D . K 4 HOH 29 1031 111 HOH HOH D . K 4 HOH 30 1032 118 HOH HOH D . K 4 HOH 31 1033 126 HOH HOH D . K 4 HOH 32 1034 137 HOH HOH D . K 4 HOH 33 1035 138 HOH HOH D . K 4 HOH 34 1036 146 HOH HOH D . K 4 HOH 35 1037 148 HOH HOH D . K 4 HOH 36 1038 154 HOH HOH D . K 4 HOH 37 1039 155 HOH HOH D . K 4 HOH 38 1040 158 HOH HOH D . K 4 HOH 39 1041 176 HOH HOH D . K 4 HOH 40 1042 178 HOH HOH D . K 4 HOH 41 1043 182 HOH HOH D . K 4 HOH 42 1044 184 HOH HOH D . K 4 HOH 43 1045 193 HOH HOH D . K 4 HOH 44 1046 200 HOH HOH D . K 4 HOH 45 1047 210 HOH HOH D . K 4 HOH 46 1048 223 HOH HOH D . K 4 HOH 47 1049 226 HOH HOH D . K 4 HOH 48 1050 228 HOH HOH D . K 4 HOH 49 1051 229 HOH HOH D . K 4 HOH 50 1052 231 HOH HOH D . K 4 HOH 51 1053 233 HOH HOH D . K 4 HOH 52 1054 236 HOH HOH D . K 4 HOH 53 1055 238 HOH HOH D . K 4 HOH 54 1056 248 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_900006 _pdbx_molecule_features.name trehalose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900006 _pdbx_molecule.asym_id E # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 44 A MSE 42 ? MET SELENOMETHIONINE 2 B MSE 44 B MSE 42 ? MET SELENOMETHIONINE 3 C MSE 44 C MSE 42 ? MET SELENOMETHIONINE 4 D MSE 44 D MSE 42 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6000 ? 1 MORE -47 ? 1 'SSA (A^2)' 12440 ? 2 'ABSA (A^2)' 14220 ? 2 MORE -105 ? 2 'SSA (A^2)' 22660 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-28 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-05-23 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Non-polymer description' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' entity_name_com 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_entity_branch 9 5 'Structure model' pdbx_entity_branch_descriptor 10 5 'Structure model' pdbx_entity_branch_link 11 5 'Structure model' pdbx_entity_branch_list 12 5 'Structure model' pdbx_entity_nonpoly 13 5 'Structure model' pdbx_molecule_features 14 5 'Structure model' pdbx_nonpoly_scheme 15 5 'Structure model' struct_asym 16 5 'Structure model' struct_conn 17 5 'Structure model' struct_ref_seq_dif 18 5 'Structure model' struct_site 19 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_atom_site.B_iso_or_equiv' 3 5 'Structure model' '_atom_site.Cartn_x' 4 5 'Structure model' '_atom_site.Cartn_y' 5 5 'Structure model' '_atom_site.Cartn_z' 6 5 'Structure model' '_atom_site.auth_asym_id' 7 5 'Structure model' '_atom_site.auth_atom_id' 8 5 'Structure model' '_atom_site.auth_comp_id' 9 5 'Structure model' '_atom_site.auth_seq_id' 10 5 'Structure model' '_atom_site.label_asym_id' 11 5 'Structure model' '_atom_site.label_atom_id' 12 5 'Structure model' '_atom_site.label_comp_id' 13 5 'Structure model' '_atom_site.label_entity_id' 14 5 'Structure model' '_atom_site.type_symbol' 15 5 'Structure model' '_chem_comp.formula' 16 5 'Structure model' '_chem_comp.formula_weight' 17 5 'Structure model' '_chem_comp.id' 18 5 'Structure model' '_chem_comp.mon_nstd_flag' 19 5 'Structure model' '_chem_comp.name' 20 5 'Structure model' '_chem_comp.pdbx_synonyms' 21 5 'Structure model' '_chem_comp.type' 22 5 'Structure model' '_entity.formula_weight' 23 5 'Structure model' '_entity.pdbx_description' 24 5 'Structure model' '_entity.pdbx_number_of_molecules' 25 5 'Structure model' '_entity.src_method' 26 5 'Structure model' '_entity.type' 27 5 'Structure model' '_struct_asym.entity_id' 28 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language MOSFLM 'data reduction' . ? 1 ? ? ? ? SCALA 'data scaling' . ? 2 ? ? ? ? SOLVE phasing . ? 3 ? ? ? ? SHARP phasing . ? 4 ? ? ? ? ARP/wARP 'model building' . ? 5 ? ? ? ? CCP4 'model building' . ? 6 ? ? ? ? CNS refinement 1.1 ? 7 ? ? ? ? CCP4 'data scaling' '(SCALA)' ? 8 ? ? ? ? CCP4 phasing . ? 9 ? ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 23 ? ? 82.95 0.91 2 1 ASP B 23 ? ? 82.08 -2.67 3 1 SER C 0 ? ? -146.36 12.91 4 1 GLN D 31 ? ? -74.95 -153.80 5 1 ALA D 32 ? ? -137.82 -67.49 6 1 GLU D 33 ? ? 69.36 -40.24 7 1 THR D 59 ? ? -26.00 144.42 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 2 GLC 1 E GLC 1 ? TRE 1001 n E 2 GLC 2 E GLC 2 ? TRE 1001 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpa1-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a1-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{[(1+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GLC 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH #