data_2FR2 # _entry.id 2FR2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2FR2 RCSB RCSB036209 WWPDB D_1000036209 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id Rv2717c _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FR2 _pdbx_database_status.recvd_initial_deposition_date 2006-01-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hung, L.W.' 1 'TB Structural Genomics Consortium (TBSGC)' 2 # _citation.id primary _citation.title 'Crystal structure of Rv2717c from Mycobacterium tuberculosis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hung, L.W.' 1 primary 'Yu, M.' 2 primary 'Bursey, E.H.' 3 primary 'Radhakannan, T.' 4 primary 'Segelke, B.W.' 5 primary 'Lekin, T.' 6 primary 'Chang, Y.B.' 7 primary 'Terwilliger, T.C.' 8 primary 'Kaviratne, A.' 9 primary 'Woodruff, T.' 10 # _cell.entry_id 2FR2 _cell.length_a 60.847 _cell.length_b 73.483 _cell.length_c 80.640 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FR2 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein Rv2717c' 18940.438 1 ? ? ? ? 2 water nat water 18.015 159 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVE LVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVL HRQRRSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVE LVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVL HRQRRSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier Rv2717c # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ARG n 1 4 ASP n 1 5 LEU n 1 6 ALA n 1 7 PRO n 1 8 ALA n 1 9 LEU n 1 10 GLN n 1 11 ALA n 1 12 LEU n 1 13 SER n 1 14 PRO n 1 15 LEU n 1 16 LEU n 1 17 GLY n 1 18 SER n 1 19 TRP n 1 20 ALA n 1 21 GLY n 1 22 ARG n 1 23 GLY n 1 24 ALA n 1 25 GLY n 1 26 LYS n 1 27 TYR n 1 28 PRO n 1 29 THR n 1 30 ILE n 1 31 ARG n 1 32 PRO n 1 33 PHE n 1 34 GLU n 1 35 TYR n 1 36 LEU n 1 37 GLU n 1 38 GLU n 1 39 VAL n 1 40 VAL n 1 41 PHE n 1 42 ALA n 1 43 HIS n 1 44 VAL n 1 45 GLY n 1 46 LYS n 1 47 PRO n 1 48 PHE n 1 49 LEU n 1 50 THR n 1 51 TYR n 1 52 THR n 1 53 GLN n 1 54 GLN n 1 55 THR n 1 56 ARG n 1 57 ALA n 1 58 VAL n 1 59 ALA n 1 60 ASP n 1 61 GLY n 1 62 LYS n 1 63 PRO n 1 64 LEU n 1 65 HIS n 1 66 SER n 1 67 GLU n 1 68 THR n 1 69 GLY n 1 70 TYR n 1 71 LEU n 1 72 ARG n 1 73 VAL n 1 74 CYS n 1 75 ARG n 1 76 PRO n 1 77 GLY n 1 78 CYS n 1 79 VAL n 1 80 GLU n 1 81 LEU n 1 82 VAL n 1 83 LEU n 1 84 ALA n 1 85 HIS n 1 86 PRO n 1 87 SER n 1 88 GLY n 1 89 ILE n 1 90 THR n 1 91 GLU n 1 92 ILE n 1 93 GLU n 1 94 VAL n 1 95 GLY n 1 96 THR n 1 97 TYR n 1 98 SER n 1 99 VAL n 1 100 THR n 1 101 GLY n 1 102 ASP n 1 103 VAL n 1 104 ILE n 1 105 GLU n 1 106 LEU n 1 107 GLU n 1 108 LEU n 1 109 SER n 1 110 THR n 1 111 ARG n 1 112 ALA n 1 113 ASP n 1 114 GLY n 1 115 SER n 1 116 ILE n 1 117 GLY n 1 118 LEU n 1 119 ALA n 1 120 PRO n 1 121 THR n 1 122 ALA n 1 123 LYS n 1 124 GLU n 1 125 VAL n 1 126 THR n 1 127 ALA n 1 128 LEU n 1 129 ASP n 1 130 ARG n 1 131 SER n 1 132 TYR n 1 133 ARG n 1 134 ILE n 1 135 ASP n 1 136 GLY n 1 137 ASP n 1 138 GLU n 1 139 LEU n 1 140 SER n 1 141 TYR n 1 142 SER n 1 143 LEU n 1 144 GLN n 1 145 MET n 1 146 ARG n 1 147 ALA n 1 148 VAL n 1 149 GLY n 1 150 GLN n 1 151 PRO n 1 152 LEU n 1 153 GLN n 1 154 ASP n 1 155 HIS n 1 156 LEU n 1 157 ALA n 1 158 ALA n 1 159 VAL n 1 160 LEU n 1 161 HIS n 1 162 ARG n 1 163 GLN n 1 164 ARG n 1 165 ARG n 1 166 SER n 1 167 HIS n 1 168 HIS n 1 169 HIS n 1 170 HIS n 1 171 HIS n 1 172 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Mycobacterium _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Mycobacterium tuberculosis' _entity_src_gen.gene_src_strain H37Rv _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL23/DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name custom _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_217233 _struct_ref.pdbx_db_accession 15609854 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVE LVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVL HRQR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FR2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 164 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 15609854 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 164 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 164 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FR2 ARG A 165 ? GB 15609854 ? ? 'EXPRESSION TAG' 165 1 1 2FR2 SER A 166 ? GB 15609854 ? ? 'EXPRESSION TAG' 166 2 1 2FR2 HIS A 167 ? GB 15609854 ? ? 'EXPRESSION TAG' 167 3 1 2FR2 HIS A 168 ? GB 15609854 ? ? 'EXPRESSION TAG' 168 4 1 2FR2 HIS A 169 ? GB 15609854 ? ? 'EXPRESSION TAG' 169 5 1 2FR2 HIS A 170 ? GB 15609854 ? ? 'EXPRESSION TAG' 170 6 1 2FR2 HIS A 171 ? GB 15609854 ? ? 'EXPRESSION TAG' 171 7 1 2FR2 HIS A 172 ? GB 15609854 ? ? 'EXPRESSION TAG' 172 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2FR2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG2000MME 18.714%, Na-K-Phosphate 0.1M, Isopropanol 9.394%, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-06-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si111 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2FR2 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.5 _reflns.number_obs 28843 _reflns.number_all 29018 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14 _reflns.B_iso_Wilson_estimate 16 _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 96.3 _reflns_shell.Rmerge_I_obs 0.416 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2796 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2FR2 _refine.ls_number_reflns_obs 27360 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.32 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.10 _refine.ls_R_factor_obs 0.18004 _refine.ls_R_factor_all 0.18004 _refine.ls_R_factor_R_work 0.17891 _refine.ls_R_factor_R_free 0.20172 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1479 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 18.436 _refine.aniso_B[1][1] -0.14 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.069 _refine.pdbx_overall_ESU_R_Free 0.070 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 2.233 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1224 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 159 _refine_hist.number_atoms_total 1383 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 40.32 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1254 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.642 1.981 ? 1716 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.468 5.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.330 23.333 ? 51 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.357 15.000 ? 194 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.537 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.120 0.200 ? 199 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 962 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.226 0.200 ? 528 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.304 0.200 ? 866 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.188 0.200 ? 109 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.205 0.200 ? 60 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.336 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.159 1.500 ? 826 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.941 2.000 ? 1302 'X-RAY DIFFRACTION' ? r_scbond_it 3.037 3.000 ? 476 'X-RAY DIFFRACTION' ? r_scangle_it 4.403 4.500 ? 411 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.504 _refine_ls_shell.d_res_low 1.543 _refine_ls_shell.number_reflns_R_work 1832 _refine_ls_shell.R_factor_R_work 0.25 _refine_ls_shell.percent_reflns_obs 91.29 _refine_ls_shell.R_factor_R_free 0.303 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2FR2 _struct.title 'Crystal Structure of Rv2717c from M. tuberculosis' _struct.pdbx_descriptor 'hypothetical protein Rv2717c' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FR2 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;BETA BARREL, fatty acid binding, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is apparently a monomer' _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 6 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 16 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 6 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 16 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 74 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 78 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 74 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 78 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.833 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 12 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 115 ? LEU A 118 ? SER A 115 LEU A 118 A 2 ILE A 89 ? THR A 100 ? ILE A 89 THR A 100 A 3 VAL A 103 ? SER A 109 ? VAL A 103 SER A 109 A 4 VAL A 125 ? ASP A 135 ? VAL A 125 ASP A 135 A 5 GLU A 138 ? ALA A 147 ? GLU A 138 ALA A 147 A 6 GLN A 150 ? ARG A 162 ? GLN A 150 ARG A 162 A 7 GLY A 17 ? GLY A 25 ? GLY A 17 GLY A 25 A 8 PHE A 33 ? HIS A 43 ? PHE A 33 HIS A 43 A 9 PHE A 48 ? ALA A 57 ? PHE A 48 ALA A 57 A 10 PRO A 63 ? VAL A 73 ? PRO A 63 VAL A 73 A 11 CYS A 78 ? HIS A 85 ? CYS A 78 HIS A 85 A 12 ILE A 89 ? THR A 100 ? ILE A 89 THR A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 115 ? O SER A 115 N ILE A 92 ? N ILE A 92 A 2 3 N THR A 100 ? N THR A 100 O VAL A 103 ? O VAL A 103 A 3 4 N LEU A 106 ? N LEU A 106 O TYR A 132 ? O TYR A 132 A 4 5 N ASP A 135 ? N ASP A 135 O GLU A 138 ? O GLU A 138 A 5 6 N LEU A 139 ? N LEU A 139 O LEU A 160 ? O LEU A 160 A 6 7 O HIS A 161 ? O HIS A 161 N ALA A 20 ? N ALA A 20 A 7 8 N TRP A 19 ? N TRP A 19 O VAL A 39 ? O VAL A 39 A 8 9 N LEU A 36 ? N LEU A 36 O ARG A 56 ? O ARG A 56 A 9 10 N THR A 55 ? N THR A 55 O HIS A 65 ? O HIS A 65 A 10 11 N ARG A 72 ? N ARG A 72 O GLU A 80 ? O GLU A 80 A 11 12 N LEU A 81 ? N LEU A 81 O GLU A 93 ? O GLU A 93 # _database_PDB_matrix.entry_id 2FR2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FR2 _atom_sites.fract_transf_matrix[1][1] 0.016435 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013609 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012401 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ARG 3 3 ? ? ? A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 CYS 74 74 74 CYS CYS A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 HIS 85 85 85 HIS HIS A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLN 144 144 144 GLN GLN A . n A 1 145 MET 145 145 145 MET MET A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 GLN 150 150 150 GLN GLN A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 HIS 161 161 161 HIS HIS A . n A 1 162 ARG 162 162 162 ARG ARG A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 ARG 164 164 164 ARG ALA A . n A 1 165 ARG 165 165 ? ? ? A . n A 1 166 SER 166 166 ? ? ? A . n A 1 167 HIS 167 167 ? ? ? A . n A 1 168 HIS 168 168 ? ? ? A . n A 1 169 HIS 169 169 ? ? ? A . n A 1 170 HIS 170 170 ? ? ? A . n A 1 171 HIS 171 171 ? ? ? A . n A 1 172 HIS 172 172 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'TB Structural Genomics Consortium' _pdbx_SG_project.initial_of_center TBSGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 173 1 HOH HOH A . B 2 HOH 2 174 2 HOH HOH A . B 2 HOH 3 175 3 HOH HOH A . B 2 HOH 4 176 4 HOH HOH A . B 2 HOH 5 177 5 HOH HOH A . B 2 HOH 6 178 6 HOH HOH A . B 2 HOH 7 179 7 HOH HOH A . B 2 HOH 8 180 8 HOH HOH A . B 2 HOH 9 181 9 HOH HOH A . B 2 HOH 10 182 10 HOH HOH A . B 2 HOH 11 183 11 HOH HOH A . B 2 HOH 12 184 12 HOH HOH A . B 2 HOH 13 185 13 HOH HOH A . B 2 HOH 14 186 14 HOH HOH A . B 2 HOH 15 187 15 HOH HOH A . B 2 HOH 16 188 16 HOH HOH A . B 2 HOH 17 189 17 HOH HOH A . B 2 HOH 18 190 18 HOH HOH A . B 2 HOH 19 191 19 HOH HOH A . B 2 HOH 20 192 20 HOH HOH A . B 2 HOH 21 193 21 HOH HOH A . B 2 HOH 22 194 22 HOH HOH A . B 2 HOH 23 195 23 HOH HOH A . B 2 HOH 24 196 24 HOH HOH A . B 2 HOH 25 197 25 HOH HOH A . B 2 HOH 26 198 26 HOH HOH A . B 2 HOH 27 199 27 HOH HOH A . B 2 HOH 28 200 28 HOH HOH A . B 2 HOH 29 201 29 HOH HOH A . B 2 HOH 30 202 30 HOH HOH A . B 2 HOH 31 203 31 HOH HOH A . B 2 HOH 32 204 32 HOH HOH A . B 2 HOH 33 205 33 HOH HOH A . B 2 HOH 34 206 34 HOH HOH A . B 2 HOH 35 207 35 HOH HOH A . B 2 HOH 36 208 36 HOH HOH A . B 2 HOH 37 209 37 HOH HOH A . B 2 HOH 38 210 38 HOH HOH A . B 2 HOH 39 211 39 HOH HOH A . B 2 HOH 40 212 40 HOH HOH A . B 2 HOH 41 213 41 HOH HOH A . B 2 HOH 42 214 42 HOH HOH A . B 2 HOH 43 215 43 HOH HOH A . B 2 HOH 44 216 44 HOH HOH A . B 2 HOH 45 217 45 HOH HOH A . B 2 HOH 46 218 46 HOH HOH A . B 2 HOH 47 219 47 HOH HOH A . B 2 HOH 48 220 48 HOH HOH A . B 2 HOH 49 221 49 HOH HOH A . B 2 HOH 50 222 50 HOH HOH A . B 2 HOH 51 223 51 HOH HOH A . B 2 HOH 52 224 52 HOH HOH A . B 2 HOH 53 225 53 HOH HOH A . B 2 HOH 54 226 54 HOH HOH A . B 2 HOH 55 227 55 HOH HOH A . B 2 HOH 56 228 56 HOH HOH A . B 2 HOH 57 229 57 HOH HOH A . B 2 HOH 58 230 58 HOH HOH A . B 2 HOH 59 231 59 HOH HOH A . B 2 HOH 60 232 60 HOH HOH A . B 2 HOH 61 233 61 HOH HOH A . B 2 HOH 62 234 62 HOH HOH A . B 2 HOH 63 235 63 HOH HOH A . B 2 HOH 64 236 64 HOH HOH A . B 2 HOH 65 237 65 HOH HOH A . B 2 HOH 66 238 66 HOH HOH A . B 2 HOH 67 239 67 HOH HOH A . B 2 HOH 68 240 68 HOH HOH A . B 2 HOH 69 241 69 HOH HOH A . B 2 HOH 70 242 70 HOH HOH A . B 2 HOH 71 243 71 HOH HOH A . B 2 HOH 72 244 72 HOH HOH A . B 2 HOH 73 245 73 HOH HOH A . B 2 HOH 74 246 74 HOH HOH A . B 2 HOH 75 247 75 HOH HOH A . B 2 HOH 76 248 76 HOH HOH A . B 2 HOH 77 249 77 HOH HOH A . B 2 HOH 78 250 78 HOH HOH A . B 2 HOH 79 251 79 HOH HOH A . B 2 HOH 80 252 80 HOH HOH A . B 2 HOH 81 253 81 HOH HOH A . B 2 HOH 82 254 82 HOH HOH A . B 2 HOH 83 255 83 HOH HOH A . B 2 HOH 84 256 84 HOH HOH A . B 2 HOH 85 257 85 HOH HOH A . B 2 HOH 86 258 86 HOH HOH A . B 2 HOH 87 259 87 HOH HOH A . B 2 HOH 88 260 88 HOH HOH A . B 2 HOH 89 261 89 HOH HOH A . B 2 HOH 90 262 90 HOH HOH A . B 2 HOH 91 263 91 HOH HOH A . B 2 HOH 92 264 92 HOH HOH A . B 2 HOH 93 265 93 HOH HOH A . B 2 HOH 94 266 94 HOH HOH A . B 2 HOH 95 267 95 HOH HOH A . B 2 HOH 96 268 96 HOH HOH A . B 2 HOH 97 269 97 HOH HOH A . B 2 HOH 98 270 98 HOH HOH A . B 2 HOH 99 271 99 HOH HOH A . B 2 HOH 100 272 100 HOH HOH A . B 2 HOH 101 273 101 HOH HOH A . B 2 HOH 102 274 102 HOH HOH A . B 2 HOH 103 275 103 HOH HOH A . B 2 HOH 104 276 104 HOH HOH A . B 2 HOH 105 277 105 HOH HOH A . B 2 HOH 106 278 106 HOH HOH A . B 2 HOH 107 279 107 HOH HOH A . B 2 HOH 108 280 108 HOH HOH A . B 2 HOH 109 281 109 HOH HOH A . B 2 HOH 110 282 110 HOH HOH A . B 2 HOH 111 283 111 HOH HOH A . B 2 HOH 112 284 112 HOH HOH A . B 2 HOH 113 285 113 HOH HOH A . B 2 HOH 114 286 114 HOH HOH A . B 2 HOH 115 287 115 HOH HOH A . B 2 HOH 116 288 116 HOH HOH A . B 2 HOH 117 289 117 HOH HOH A . B 2 HOH 118 290 118 HOH HOH A . B 2 HOH 119 291 119 HOH HOH A . B 2 HOH 120 292 120 HOH HOH A . B 2 HOH 121 293 121 HOH HOH A . B 2 HOH 122 294 122 HOH HOH A . B 2 HOH 123 295 123 HOH HOH A . B 2 HOH 124 296 124 HOH HOH A . B 2 HOH 125 297 125 HOH HOH A . B 2 HOH 126 298 126 HOH HOH A . B 2 HOH 127 299 127 HOH HOH A . B 2 HOH 128 300 128 HOH HOH A . B 2 HOH 129 301 129 HOH HOH A . B 2 HOH 130 302 130 HOH HOH A . B 2 HOH 131 303 131 HOH HOH A . B 2 HOH 132 304 132 HOH HOH A . B 2 HOH 133 305 133 HOH HOH A . B 2 HOH 134 306 134 HOH HOH A . B 2 HOH 135 307 135 HOH HOH A . B 2 HOH 136 308 136 HOH HOH A . B 2 HOH 137 309 137 HOH HOH A . B 2 HOH 138 310 138 HOH HOH A . B 2 HOH 139 311 139 HOH HOH A . B 2 HOH 140 312 140 HOH HOH A . B 2 HOH 141 313 141 HOH HOH A . B 2 HOH 142 314 142 HOH HOH A . B 2 HOH 143 315 143 HOH HOH A . B 2 HOH 144 316 144 HOH HOH A . B 2 HOH 145 317 145 HOH HOH A . B 2 HOH 146 318 146 HOH HOH A . B 2 HOH 147 319 147 HOH HOH A . B 2 HOH 148 320 148 HOH HOH A . B 2 HOH 149 321 149 HOH HOH A . B 2 HOH 150 322 150 HOH HOH A . B 2 HOH 151 323 151 HOH HOH A . B 2 HOH 152 324 152 HOH HOH A . B 2 HOH 153 325 153 HOH HOH A . B 2 HOH 154 326 154 HOH HOH A . B 2 HOH 155 327 155 HOH HOH A . B 2 HOH 156 328 156 HOH HOH A . B 2 HOH 157 329 157 HOH HOH A . B 2 HOH 158 330 158 HOH HOH A . B 2 HOH 159 331 159 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2480 ? 2 MORE -15 ? 2 'SSA (A^2)' 14560 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 73.4830000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 294 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-31 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 5.6310 _pdbx_refine_tls.origin_y 26.1440 _pdbx_refine_tls.origin_z 17.0290 _pdbx_refine_tls.T[1][1] -0.0086 _pdbx_refine_tls.T[2][2] -0.0296 _pdbx_refine_tls.T[3][3] -0.0721 _pdbx_refine_tls.T[1][2] -0.0106 _pdbx_refine_tls.T[1][3] -0.0010 _pdbx_refine_tls.T[2][3] 0.0249 _pdbx_refine_tls.L[1][1] 0.4291 _pdbx_refine_tls.L[2][2] 0.3689 _pdbx_refine_tls.L[3][3] 0.2768 _pdbx_refine_tls.L[1][2] -0.2937 _pdbx_refine_tls.L[1][3] 0.1563 _pdbx_refine_tls.L[2][3] -0.0188 _pdbx_refine_tls.S[1][1] -0.0148 _pdbx_refine_tls.S[1][2] -0.0953 _pdbx_refine_tls.S[1][3] -0.0314 _pdbx_refine_tls.S[2][1] 0.0130 _pdbx_refine_tls.S[2][2] -0.0169 _pdbx_refine_tls.S[2][3] -0.0224 _pdbx_refine_tls.S[3][1] 0.0058 _pdbx_refine_tls.S[3][2] 0.0251 _pdbx_refine_tls.S[3][3] 0.0318 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 4 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 164 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 164 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND1 A HIS 161 ? ? O A HOH 301 ? ? 2.14 2 1 NZ A LYS 62 ? ? O A HOH 328 ? ? 2.15 3 1 OE1 A GLN 144 ? B O A HOH 251 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 258 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 258 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 1.88 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 38 ? ? CD A GLU 38 ? ? 1.422 1.515 -0.093 0.015 N 2 1 CB A LYS 62 ? ? CG A LYS 62 ? ? 1.285 1.521 -0.236 0.027 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 47 ? ? -73.51 47.17 2 1 LEU A 64 ? ? -107.85 -100.53 3 1 CYS A 74 ? ? -61.45 -74.82 4 1 ALA A 112 ? ? -100.25 59.49 5 1 HIS A 155 ? ? -133.05 -52.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 31 ? CD ? A ARG 31 CD 2 1 Y 0 A ARG 31 ? NE ? A ARG 31 NE 3 1 Y 0 A ARG 31 ? CZ ? A ARG 31 CZ 4 1 Y 0 A ARG 31 ? NH1 ? A ARG 31 NH1 5 1 Y 0 A ARG 31 ? NH2 ? A ARG 31 NH2 6 1 Y 0 A GLU 38 ? CD ? A GLU 38 CD 7 1 Y 0 A GLU 38 ? OE1 ? A GLU 38 OE1 8 1 Y 0 A GLU 38 ? OE2 ? A GLU 38 OE2 9 1 Y 0 A LYS 62 ? CG ? A LYS 62 CG 10 1 Y 0 A LYS 62 ? CD ? A LYS 62 CD 11 1 Y 0 A LYS 62 ? CE ? A LYS 62 CE 12 1 Y 0 A LYS 62 ? NZ ? A LYS 62 NZ 13 1 Y 1 A ARG 164 ? CG ? A ARG 164 CG 14 1 Y 1 A ARG 164 ? CD ? A ARG 164 CD 15 1 Y 1 A ARG 164 ? NE ? A ARG 164 NE 16 1 Y 1 A ARG 164 ? CZ ? A ARG 164 CZ 17 1 Y 1 A ARG 164 ? NH1 ? A ARG 164 NH1 18 1 Y 1 A ARG 164 ? NH2 ? A ARG 164 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ARG 3 ? A ARG 3 4 1 Y 1 A ARG 165 ? A ARG 165 5 1 Y 1 A SER 166 ? A SER 166 6 1 Y 1 A HIS 167 ? A HIS 167 7 1 Y 1 A HIS 168 ? A HIS 168 8 1 Y 1 A HIS 169 ? A HIS 169 9 1 Y 1 A HIS 170 ? A HIS 170 10 1 Y 1 A HIS 171 ? A HIS 171 11 1 Y 1 A HIS 172 ? A HIS 172 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #