HEADER OXIDOREDUCTASE 19-JAN-06 2FRE TITLE THE CRYSTAL STRUCTURE OF THE OXIDOREDUCTASE CONTAINING FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)H-FLAVIN OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS OXIDOREDUCTASE, FMN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2FRE 1 VERSN REVDAT 2 24-FEB-09 2FRE 1 VERSN REVDAT 1 07-MAR-06 2FRE 0 JRNL AUTH R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE OXIDOREDUCTASE CONTAINING FMN JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 34404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2435 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3309 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2889 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4504 ; 1.268 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6735 ; 0.795 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 5.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;34.671 ;23.725 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;13.497 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.150 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3660 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 676 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 768 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2998 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1603 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1782 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 302 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.270 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2394 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 800 ; 0.170 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3189 ; 1.090 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 1.910 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1315 ; 2.581 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 151 REMARK 3 RESIDUE RANGE : A 152 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8820 11.0510 46.5180 REMARK 3 T TENSOR REMARK 3 T11: -0.0397 T22: -0.0471 REMARK 3 T33: -0.0888 T12: 0.0050 REMARK 3 T13: 0.0153 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.8552 L22: 1.0086 REMARK 3 L33: 1.4653 L12: 0.1477 REMARK 3 L13: -0.5084 L23: -0.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.0641 S13: -0.1789 REMARK 3 S21: 0.0940 S22: 0.0165 S23: 0.1177 REMARK 3 S31: 0.0710 S32: -0.0152 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 50 REMARK 3 RESIDUE RANGE : B 51 B 100 REMARK 3 RESIDUE RANGE : B 101 B 151 REMARK 3 RESIDUE RANGE : B 152 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7510 20.1300 31.0560 REMARK 3 T TENSOR REMARK 3 T11: -0.0118 T22: -0.0061 REMARK 3 T33: -0.1554 T12: -0.0191 REMARK 3 T13: -0.0032 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.9261 L22: 1.2354 REMARK 3 L33: 1.3779 L12: 0.1622 REMARK 3 L13: -0.1383 L23: 0.1031 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: 0.2298 S13: -0.0277 REMARK 3 S21: -0.2138 S22: 0.0499 S23: 0.0640 REMARK 3 S31: -0.1523 S32: 0.0547 S33: -0.0247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB036220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 68.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 16.600 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M POTASSIUM BROMIDE, 36% PEG2KMME, REMARK 280 10MM FMN, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.66200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.66850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.66850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.49300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.66850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.66850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.83100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.66850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.66850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.49300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.66850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.66850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.83100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.66200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED MOL.A AND REMARK 300 MOL.B REPRESENT THE DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 199 REMARK 465 ASP B 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MSE A 1 O HOH A 1220 2.07 REMARK 500 O HOH B 1205 O HOH B 1238 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 123 SE MSE A 123 CE -0.465 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 50 18.59 57.37 REMARK 500 SER B 50 19.13 54.36 REMARK 500 ASP B 63 21.48 -76.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MSE B 123 20.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1343 DISTANCE = 5.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 1152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5856 RELATED DB: TARGETDB DBREF 2FRE A 1 200 UNP Q8UJB5 Q8UJB5_AGRT5 1 200 DBREF 2FRE B 1 200 UNP Q8UJB5 Q8UJB5_AGRT5 1 200 SEQADV 2FRE MSE A 1 UNP Q8UJB5 MET 1 MODIFIED RESIDUE SEQADV 2FRE MSE A 31 UNP Q8UJB5 MET 31 MODIFIED RESIDUE SEQADV 2FRE MSE A 75 UNP Q8UJB5 MET 75 MODIFIED RESIDUE SEQADV 2FRE MSE A 123 UNP Q8UJB5 MET 123 MODIFIED RESIDUE SEQADV 2FRE MSE A 135 UNP Q8UJB5 MET 135 MODIFIED RESIDUE SEQADV 2FRE MSE B 1 UNP Q8UJB5 MET 1 MODIFIED RESIDUE SEQADV 2FRE MSE B 31 UNP Q8UJB5 MET 31 MODIFIED RESIDUE SEQADV 2FRE MSE B 75 UNP Q8UJB5 MET 75 MODIFIED RESIDUE SEQADV 2FRE MSE B 123 UNP Q8UJB5 MET 123 MODIFIED RESIDUE SEQADV 2FRE MSE B 135 UNP Q8UJB5 MET 135 MODIFIED RESIDUE SEQRES 1 A 200 MSE THR ASN SER ASN ASN ARG GLN SER GLU TYR PRO VAL SEQRES 2 A 200 ASP PRO LEU PHE LEU ASP ARG TRP SER PRO ARG ALA PHE SEQRES 3 A 200 ASP GLY SER PRO MSE PRO LYS GLU HIS LEU LEU THR ILE SEQRES 4 A 200 LEU ASP ALA ALA HIS TRP ALA PRO SER ALA SER ASN HIS SEQRES 5 A 200 GLN PRO TRP ARG PHE VAL TYR ALA HIS LYS ASP SER GLU SEQRES 6 A 200 ASP TRP PRO LEU PHE VAL GLU LEU LEU MSE GLU GLY ASN SEQRES 7 A 200 GLN LYS TRP ALA LYS ASN ALA SER VAL LEU LEU PHE VAL SEQRES 8 A 200 ILE SER ARG ASP HIS THR ILE SER HIS GLU GLY GLU LYS SEQRES 9 A 200 LYS PRO SER ALA THR HIS SER PHE ASP ALA GLY ALA ALA SEQRES 10 A 200 TRP PHE SER LEU ALA MSE GLN ALA HIS LEU LEU GLY TYR SEQRES 11 A 200 HIS ALA HIS GLY MSE GLY GLY ILE PHE LYS ASP ARG ILE SEQRES 12 A 200 VAL GLU LYS LEU ASP ILE PRO ASP GLY PHE LYS VAL GLU SEQRES 13 A 200 ALA GLY VAL ALA ILE GLY THR LEU THR ASP LYS SER ILE SEQRES 14 A 200 LEU PRO ASP ASP LEU ALA GLU ARG GLU VAL PRO SER LYS SEQRES 15 A 200 ARG VAL PRO LEU ALA ASP VAL ALA PHE GLU GLY ARG PHE SEQRES 16 A 200 THR GLY LYS ALA ASP SEQRES 1 B 200 MSE THR ASN SER ASN ASN ARG GLN SER GLU TYR PRO VAL SEQRES 2 B 200 ASP PRO LEU PHE LEU ASP ARG TRP SER PRO ARG ALA PHE SEQRES 3 B 200 ASP GLY SER PRO MSE PRO LYS GLU HIS LEU LEU THR ILE SEQRES 4 B 200 LEU ASP ALA ALA HIS TRP ALA PRO SER ALA SER ASN HIS SEQRES 5 B 200 GLN PRO TRP ARG PHE VAL TYR ALA HIS LYS ASP SER GLU SEQRES 6 B 200 ASP TRP PRO LEU PHE VAL GLU LEU LEU MSE GLU GLY ASN SEQRES 7 B 200 GLN LYS TRP ALA LYS ASN ALA SER VAL LEU LEU PHE VAL SEQRES 8 B 200 ILE SER ARG ASP HIS THR ILE SER HIS GLU GLY GLU LYS SEQRES 9 B 200 LYS PRO SER ALA THR HIS SER PHE ASP ALA GLY ALA ALA SEQRES 10 B 200 TRP PHE SER LEU ALA MSE GLN ALA HIS LEU LEU GLY TYR SEQRES 11 B 200 HIS ALA HIS GLY MSE GLY GLY ILE PHE LYS ASP ARG ILE SEQRES 12 B 200 VAL GLU LYS LEU ASP ILE PRO ASP GLY PHE LYS VAL GLU SEQRES 13 B 200 ALA GLY VAL ALA ILE GLY THR LEU THR ASP LYS SER ILE SEQRES 14 B 200 LEU PRO ASP ASP LEU ALA GLU ARG GLU VAL PRO SER LYS SEQRES 15 B 200 ARG VAL PRO LEU ALA ASP VAL ALA PHE GLU GLY ARG PHE SEQRES 16 B 200 THR GLY LYS ALA ASP MODRES 2FRE MSE A 1 MET SELENOMETHIONINE MODRES 2FRE MSE A 31 MET SELENOMETHIONINE MODRES 2FRE MSE A 75 MET SELENOMETHIONINE MODRES 2FRE MSE A 123 MET SELENOMETHIONINE MODRES 2FRE MSE A 135 MET SELENOMETHIONINE MODRES 2FRE MSE B 1 MET SELENOMETHIONINE MODRES 2FRE MSE B 31 MET SELENOMETHIONINE MODRES 2FRE MSE B 75 MET SELENOMETHIONINE MODRES 2FRE MSE B 123 MET SELENOMETHIONINE MODRES 2FRE MSE B 135 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 31 8 HET MSE A 75 8 HET MSE A 123 8 HET MSE A 135 8 HET MSE B 1 8 HET MSE B 31 8 HET MSE B 75 8 HET MSE B 123 8 HET MSE B 135 8 HET FMN A1151 31 HET FMN B1152 31 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *405(H2 O) HELIX 1 1 PRO A 15 ARG A 20 1 6 HELIX 2 2 PRO A 32 TRP A 45 1 14 HELIX 3 3 SER A 48 HIS A 52 5 5 HELIX 4 4 ASP A 66 LEU A 73 1 8 HELIX 5 5 MSE A 75 LYS A 83 1 9 HELIX 6 6 THR A 109 LEU A 128 1 20 HELIX 7 7 PHE A 139 LEU A 147 1 9 HELIX 8 8 ASP A 166 LEU A 170 5 5 HELIX 9 9 PRO A 171 ARG A 177 1 7 HELIX 10 10 PRO A 185 ASP A 188 5 4 HELIX 11 11 PRO B 15 ARG B 20 1 6 HELIX 12 12 PRO B 32 TRP B 45 1 14 HELIX 13 13 SER B 48 HIS B 52 5 5 HELIX 14 14 ASP B 66 LEU B 73 1 8 HELIX 15 15 MSE B 75 LYS B 83 1 9 HELIX 16 16 THR B 109 LEU B 128 1 20 HELIX 17 17 PHE B 139 LEU B 147 1 9 HELIX 18 18 ASP B 166 LEU B 170 5 5 HELIX 19 19 PRO B 171 ARG B 177 1 7 HELIX 20 20 PRO B 185 ASP B 188 5 4 SHEET 1 A 2 ASN A 3 SER A 4 0 SHEET 2 A 2 ARG A 7 GLN A 8 -1 O ARG A 7 N SER A 4 SHEET 1 B 5 HIS A 131 MSE A 135 0 SHEET 2 B 5 PHE A 153 GLY A 162 -1 O GLY A 158 N MSE A 135 SHEET 3 B 5 VAL A 87 ARG A 94 -1 N SER A 93 O LYS A 154 SHEET 4 B 5 TRP A 55 HIS A 61 -1 N ARG A 56 O ILE A 92 SHEET 5 B 5 ALA B 190 GLU B 192 1 O PHE B 191 N PHE A 57 SHEET 1 C 2 HIS A 96 ILE A 98 0 SHEET 2 C 2 LYS A 104 PRO A 106 -1 O LYS A 105 N THR A 97 SHEET 1 D 5 ALA A 190 GLU A 192 0 SHEET 2 D 5 TRP B 55 HIS B 61 1 O PHE B 57 N PHE A 191 SHEET 3 D 5 VAL B 87 ARG B 94 -1 O ILE B 92 N ARG B 56 SHEET 4 D 5 PHE B 153 GLY B 162 -1 O LYS B 154 N SER B 93 SHEET 5 D 5 HIS B 131 MSE B 135 -1 N MSE B 135 O GLY B 158 SHEET 1 E 2 ASN B 3 SER B 4 0 SHEET 2 E 2 ARG B 7 GLN B 8 -1 O ARG B 7 N SER B 4 SHEET 1 F 2 HIS B 96 ILE B 98 0 SHEET 2 F 2 LYS B 104 PRO B 106 -1 O LYS B 105 N THR B 97 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C PRO A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N PRO A 32 1555 1555 1.34 LINK C LEU A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N GLU A 76 1555 1555 1.33 LINK C ALA A 122 N MSE A 123 1555 1555 1.32 LINK C MSE A 123 N GLN A 124 1555 1555 1.32 LINK C GLY A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N GLY A 136 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C PRO B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N PRO B 32 1555 1555 1.34 LINK C LEU B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N GLU B 76 1555 1555 1.33 LINK C ALA B 122 N MSE B 123 1555 1555 1.32 LINK C MSE B 123 N GLN B 124 1555 1555 1.32 LINK C GLY B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N GLY B 136 1555 1555 1.33 SITE 1 AC1 25 ARG A 7 ARG A 20 TRP A 21 SER A 22 SITE 2 AC1 25 ARG A 24 ASN A 78 TRP A 81 HIS A 100 SITE 3 AC1 25 GLU A 101 HIS A 133 GLY A 134 MSE A 135 SITE 4 AC1 25 GLY A 136 GLY A 137 SER A 181 ARG A 183 SITE 5 AC1 25 HOH A1156 HOH A1168 HOH A1172 HOH A1345 SITE 6 AC1 25 PRO B 47 SER B 48 ALA B 49 ASN B 51 SITE 7 AC1 25 ASP B 113 SITE 1 AC2 26 PRO A 47 SER A 48 ALA A 49 ASN A 51 SITE 2 AC2 26 ASP A 113 ARG B 7 ARG B 20 TRP B 21 SITE 3 AC2 26 SER B 22 ARG B 24 ASN B 78 TRP B 81 SITE 4 AC2 26 HIS B 100 GLU B 101 TRP B 118 HIS B 133 SITE 5 AC2 26 GLY B 134 MSE B 135 GLY B 136 GLY B 137 SITE 6 AC2 26 SER B 181 ARG B 183 HOH B1165 HOH B1178 SITE 7 AC2 26 HOH B1201 HOH B1235 CRYST1 77.337 77.337 151.324 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006608 0.00000 HETATM 1 N MSE A 1 23.951 39.525 45.691 1.00 46.43 N HETATM 2 CA MSE A 1 23.954 38.027 45.854 1.00 46.56 C HETATM 3 C MSE A 1 22.709 37.497 46.544 1.00 43.51 C HETATM 4 O MSE A 1 21.819 38.251 46.893 1.00 43.45 O HETATM 5 CB MSE A 1 25.199 37.570 46.611 1.00 49.20 C HETATM 6 CG MSE A 1 25.077 37.590 48.131 1.00 53.50 C HETATM 7 SE MSE A 1 24.180 39.180 48.783 1.00 69.59 SE HETATM 8 CE MSE A 1 25.731 40.419 49.284 1.00 62.80 C