HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-JAN-06 2FRN OBSLTE 20-OCT-09 2FRN 3K6R TITLE CRYSTAL STRUCTURE OF PROTEIN PH0793 FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH0793; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII OT3; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVES KEYWDS STRUCTURAL GENOMICS, PYROCOCCUS HORIKOSHII, HYPOTHETICAL KEYWDS 2 PROTEIN, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 20-OCT-09 2FRN 1 OBSLTE REVDAT 3 24-FEB-09 2FRN 1 VERSN REVDAT 2 19-DEC-06 2FRN 1 TITLE JRNL REVDAT 1 07-MAR-06 2FRN 0 JRNL AUTH C.CHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROTEIN PH0793 FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 17232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2032 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2745 ; 2.315 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 7.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;30.990 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;18.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 309 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1496 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 933 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1311 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.221 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.395 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 1.375 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2006 ; 1.834 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 868 ; 3.434 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 739 ; 4.568 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2FRN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB036229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.19200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXE, SOLVE/RESOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10K, 0.1M MES PH 6, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.11550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 ILE A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 ARG A 9 REMARK 465 ILE A 10 REMARK 465 ARG A 11 REMARK 465 GLU A 12 REMARK 465 ILE A 13 REMARK 465 LEU A 14 REMARK 465 SER A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 41 REMARK 465 ARG A 42 REMARK 465 HIS A 70 REMARK 465 ILE A 71 REMARK 465 HIS A 72 REMARK 465 GLY A 73 REMARK 465 GLU A 74 REMARK 465 THR A 75 REMARK 465 ARG A 76 REMARK 465 LYS A 77 REMARK 465 PRO A 78 REMARK 465 ASP A 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 TYR A 80 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 EDO A 279 O HOH A 382 2.04 REMARK 500 O HOH A 351 O HOH A 352 2.04 REMARK 500 ND2 ASN A 225 O HOH A 314 2.07 REMARK 500 NH1 ARG A 32 O HOH A 357 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 383 O HOH A 385 2555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 44 CD GLU A 44 OE1 0.082 REMARK 500 GLU A 44 CD GLU A 44 OE2 0.159 REMARK 500 LEU A 45 CB LEU A 45 CG 0.268 REMARK 500 LYS A 49 C HIS A 50 N 0.153 REMARK 500 ARG A 51 CD ARG A 51 NE 0.211 REMARK 500 ARG A 51 CZ ARG A 51 NH1 0.270 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 47 C - N - CA ANGL. DEV. = 21.7 DEGREES REMARK 500 PRO A 47 C - N - CD ANGL. DEV. = -16.9 DEGREES REMARK 500 LYS A 49 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 51 CD - NE - CZ ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 20 -61.72 70.40 REMARK 500 GLU A 21 -40.94 54.14 REMARK 500 LEU A 25 39.64 86.19 REMARK 500 LEU A 26 70.79 64.83 REMARK 500 LYS A 28 -153.05 51.43 REMARK 500 GLU A 44 -90.78 -19.09 REMARK 500 LEU A 45 -102.50 -1.15 REMARK 500 GLU A 46 -71.58 -172.09 REMARK 500 PRO A 47 94.10 17.36 REMARK 500 TYR A 48 -105.22 -97.82 REMARK 500 LYS A 49 -110.03 137.41 REMARK 500 HIS A 50 -47.39 -2.07 REMARK 500 LYS A 68 -90.08 157.72 REMARK 500 PRO A 264 -113.48 -74.43 REMARK 500 LYS A 277 -178.67 -55.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 51 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 46 20.7 L L OUTSIDE RANGE REMARK 500 VAL A 122 22.0 L L OUTSIDE RANGE REMARK 500 LYS A 277 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 345 DISTANCE = 8.77 ANGSTROMS REMARK 525 HOH A 367 DISTANCE = 5.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5737 RELATED DB: TARGETDB DBREF 2FRN A 1 278 UNP O58523 O58523_PYRHO 1 278 SEQADV 2FRN MSE A 1 UNP O58523 MET 1 MODIFIED RESIDUE SEQADV 2FRN MSE A 107 UNP O58523 MET 107 MODIFIED RESIDUE SEQADV 2FRN MSE A 119 UNP O58523 MET 119 MODIFIED RESIDUE SEQADV 2FRN MSE A 132 UNP O58523 MET 132 MODIFIED RESIDUE SEQADV 2FRN MSE A 177 UNP O58523 MET 177 MODIFIED RESIDUE SEQADV 2FRN MSE A 182 UNP O58523 MET 182 MODIFIED RESIDUE SEQADV 2FRN MSE A 198 UNP O58523 MET 198 MODIFIED RESIDUE SEQADV 2FRN MSE A 232 UNP O58523 MET 232 MODIFIED RESIDUE SEQRES 1 A 278 MSE ARG THR GLN GLY ILE LYS PRO ARG ILE ARG GLU ILE SEQRES 2 A 278 LEU SER LYS GLU LEU PRO GLU GLU LEU VAL LYS LEU LEU SEQRES 3 A 278 PRO LYS ARG TRP VAL ARG ILE GLY ASP VAL LEU LEU LEU SEQRES 4 A 278 PRO LEU ARG PRO GLU LEU GLU PRO TYR LYS HIS ARG ILE SEQRES 5 A 278 ALA GLU VAL TYR ALA GLU VAL LEU GLY VAL LYS THR VAL SEQRES 6 A 278 LEU ARG LYS GLY HIS ILE HIS GLY GLU THR ARG LYS PRO SEQRES 7 A 278 ASP TYR GLU LEU LEU TYR GLY SER ASP THR VAL THR VAL SEQRES 8 A 278 HIS VAL GLU ASN GLY ILE LYS TYR LYS LEU ASP VAL ALA SEQRES 9 A 278 LYS ILE MSE PHE SER PRO ALA ASN VAL LYS GLU ARG VAL SEQRES 10 A 278 ARG MSE ALA LYS VAL ALA LYS PRO ASP GLU LEU VAL VAL SEQRES 11 A 278 ASP MSE PHE ALA GLY ILE GLY HIS LEU SER LEU PRO ILE SEQRES 12 A 278 ALA VAL TYR GLY LYS ALA LYS VAL ILE ALA ILE GLU LYS SEQRES 13 A 278 ASP PRO TYR THR PHE LYS PHE LEU VAL GLU ASN ILE HIS SEQRES 14 A 278 LEU ASN LYS VAL GLU ASP ARG MSE SER ALA TYR ASN MSE SEQRES 15 A 278 ASP ASN ARG ASP PHE PRO GLY GLU ASN ILE ALA ASP ARG SEQRES 16 A 278 ILE LEU MSE GLY TYR VAL VAL ARG THR HIS GLU PHE ILE SEQRES 17 A 278 PRO LYS ALA LEU SER ILE ALA LYS ASP GLY ALA ILE ILE SEQRES 18 A 278 HIS TYR HIS ASN THR VAL PRO GLU LYS LEU MSE PRO ARG SEQRES 19 A 278 GLU PRO PHE GLU THR PHE LYS ARG ILE THR LYS GLU TYR SEQRES 20 A 278 GLY TYR ASP VAL GLU LYS LEU ASN GLU LEU LYS ILE LYS SEQRES 21 A 278 ARG TYR ALA PRO GLY VAL TRP HIS VAL VAL LEU ASP LEU SEQRES 22 A 278 ARG VAL PHE LYS SER MODRES 2FRN MSE A 107 MET SELENOMETHIONINE MODRES 2FRN MSE A 119 MET SELENOMETHIONINE MODRES 2FRN MSE A 132 MET SELENOMETHIONINE MODRES 2FRN MSE A 177 MET SELENOMETHIONINE MODRES 2FRN MSE A 182 MET SELENOMETHIONINE MODRES 2FRN MSE A 198 MET SELENOMETHIONINE MODRES 2FRN MSE A 232 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 119 8 HET MSE A 132 8 HET MSE A 177 8 HET MSE A 182 8 HET MSE A 198 8 HET MSE A 232 8 HET EDO A 279 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *113(H2 O) HELIX 1 1 HIS A 50 GLY A 61 1 12 HELIX 2 2 SER A 109 ALA A 111 5 3 HELIX 3 3 ASN A 112 ALA A 123 1 12 HELIX 4 4 LEU A 139 TYR A 146 1 8 HELIX 5 5 ASP A 157 ASN A 171 1 15 HELIX 6 6 ARG A 203 GLU A 206 5 4 HELIX 7 7 PHE A 207 ILE A 214 1 8 HELIX 8 8 LYS A 230 MSE A 232 5 3 HELIX 9 9 PRO A 236 TYR A 247 1 12 SHEET 1 A 4 VAL A 31 ILE A 33 0 SHEET 2 A 4 VAL A 36 LEU A 38 -1 O LEU A 38 N VAL A 31 SHEET 3 A 4 THR A 64 ARG A 67 1 O LEU A 66 N LEU A 37 SHEET 4 A 4 GLU A 81 TYR A 84 -1 O GLU A 81 N ARG A 67 SHEET 1 B 2 VAL A 89 GLU A 94 0 SHEET 2 B 2 ILE A 97 ASP A 102 -1 O TYR A 99 N HIS A 92 SHEET 1 C 7 MSE A 177 TYR A 180 0 SHEET 2 C 7 LYS A 150 ILE A 154 1 N ALA A 153 O SER A 178 SHEET 3 C 7 LEU A 128 ASP A 131 1 N VAL A 129 O LYS A 150 SHEET 4 C 7 ALA A 193 MSE A 198 1 O LEU A 197 N VAL A 130 SHEET 5 C 7 ALA A 215 PRO A 228 1 O HIS A 222 N MSE A 198 SHEET 6 C 7 VAL A 266 PHE A 276 -1 O TRP A 267 N VAL A 227 SHEET 7 C 7 ASP A 250 TYR A 262 -1 N GLU A 252 O ARG A 274 LINK C ILE A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N PHE A 108 1555 1555 1.33 LINK C ARG A 118 N MSE A 119 1555 1555 1.34 LINK C MSE A 119 N ALA A 120 1555 1555 1.34 LINK C ASP A 131 N MSE A 132 1555 1555 1.31 LINK C MSE A 132 N PHE A 133 1555 1555 1.34 LINK C ARG A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N SER A 178 1555 1555 1.33 LINK C ASN A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N ASP A 183 1555 1555 1.33 LINK C LEU A 197 N MSE A 198 1555 1555 1.34 LINK C MSE A 198 N GLY A 199 1555 1555 1.33 LINK C LEU A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N PRO A 233 1555 1555 1.34 CISPEP 1 PRO A 43 GLU A 44 0 -13.35 CISPEP 2 GLU A 46 PRO A 47 0 21.94 CISPEP 3 PRO A 47 TYR A 48 0 21.47 CISPEP 4 ARG A 67 LYS A 68 0 6.70 CISPEP 5 MSE A 232 PRO A 233 0 -1.50 CISPEP 6 GLU A 235 PRO A 236 0 5.05 CISPEP 7 ALA A 263 PRO A 264 0 1.80 SITE 1 AC1 7 MSE A 132 ILE A 154 LYS A 156 ASP A 183 SITE 2 AC1 7 ASN A 184 HOH A 317 HOH A 382 CRYST1 51.308 54.231 58.613 90.00 100.02 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019490 0.000000 0.003445 0.00000 SCALE2 0.000000 0.018440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017325 0.00000