HEADER HYDROLASE 20-JAN-06 2FS2 TITLE STRUCTURE OF THE E. COLI PAAI PROTEIN FROM THE PHYENYLACETIC ACID TITLE 2 DEGRADATION OPERON COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLACETIC ACID DEGRADATION PROTEIN PAAI; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PAAI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: TOPO-ADAPTED C-TERM HEXAHISTIDINE TAG KEYWDS T820, PHENYLACETIC ACID, DEGRADATION, OPERON, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.KNIEWEL,J.A.BUGLINO,V.SOLORZANO,J.WU,C.D.LIMA,S.K.BURLEY,NEW YORK AUTHOR 2 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 03-FEB-21 2FS2 1 AUTHOR REMARK SEQADV LINK REVDAT 4 18-OCT-17 2FS2 1 REMARK REVDAT 3 24-FEB-09 2FS2 1 VERSN REVDAT 2 02-MAY-06 2FS2 1 JRNL REVDAT 1 07-FEB-06 2FS2 0 JRNL AUTH F.SONG,Z.ZHUANG,L.FINCI,D.DUNAWAY-MARIANO,R.KNIEWEL, JRNL AUTH 2 J.A.BUGLINO,V.SOLORZANO,J.WU,C.D.LIMA JRNL TITL STRUCTURE, FUNCTION, AND MECHANISM OF THE PHENYLACETATE JRNL TITL 2 PATHWAY HOT DOG-FOLD THIOESTERASE PAAI JRNL REF J.BIOL.CHEM. V. 281 11028 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16464851 JRNL DOI 10.1074/JBC.M513896200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.1 REMARK 3 NUMBER OF REFLECTIONS : 19072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2062 ; 0.031 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2790 ; 2.329 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 7.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.167 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1560 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 866 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 1.608 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2102 ; 3.087 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 734 ; 5.506 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 688 ; 8.814 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE NUMBER OF UNIQUE REFLECTIONS FOR THE DATA COLLECTION REMARK 200 INCLUDES FRIEDEL PAIRS USED TO PHASE THE STRUCTURE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 4000, 0.1M BIS-TRIS, 20% MPD, REMARK 280 0.2M LITHIUM SULFATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.05600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.11200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.11200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.05600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMER BY TRANSLATING THE DIMER BY REMARK 300 REMARK 300 1 0 0 REMARK 300 0 -1 0 REMARK 300 0 0 -1 REMARK 300 TRANS 0, 121.0, 195.3 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 120.97855 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 195.28000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 169 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 171 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 ILE A 136 REMARK 465 THR A 137 REMARK 465 GLY A 138 REMARK 465 GLU A 139 REMARK 465 ALA A 140 REMARK 465 GLU A 141 REMARK 465 GLY A 142 REMARK 465 GLY A 143 REMARK 465 SER A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 GLY B 138 REMARK 465 GLU B 139 REMARK 465 ALA B 140 REMARK 465 GLU B 141 REMARK 465 GLY B 142 REMARK 465 GLY B 143 REMARK 465 SER B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 86 O1 SO4 A 152 2.10 REMARK 500 O HOH A 160 O HOH A 185 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 126 CG ARG A 126 CD 0.164 REMARK 500 GLN B 71 CG GLN B 71 CD 0.145 REMARK 500 SER B 78 CB SER B 78 OG -0.083 REMARK 500 GLN B 99 CB GLN B 99 CG -0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 61 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 83 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP B 30 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 THR B 81 OG1 - CB - CG2 ANGL. DEV. = -15.3 DEGREES REMARK 500 GLN B 99 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP B 111 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 131 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PSU RELATED DB: PDB REMARK 900 PREVIOUS REFINEMENT TO 2.2 REMARK 900 RELATED ID: NYSGXRC-1PSU RELATED DB: TARGETDB DBREF 2FS2 A 2 140 UNP P76084 PAAI_ECOLI 2 140 DBREF 2FS2 B 2 140 UNP P76084 PAAI_ECOLI 2 140 SEQADV 2FS2 SER A 0 UNP P76084 CLONING ARTIFACT SEQADV 2FS2 LEU A 1 UNP P76084 CLONING ARTIFACT SEQADV 2FS2 MSE A 12 UNP P76084 MET 12 MODIFIED RESIDUE SEQADV 2FS2 MSE A 29 UNP P76084 MET 29 MODIFIED RESIDUE SEQADV 2FS2 MSE A 38 UNP P76084 MET 38 MODIFIED RESIDUE SEQADV 2FS2 MSE A 44 UNP P76084 MET 44 MODIFIED RESIDUE SEQADV 2FS2 GLU A 141 UNP P76084 EXPRESSION TAG SEQADV 2FS2 GLY A 142 UNP P76084 EXPRESSION TAG SEQADV 2FS2 GLY A 143 UNP P76084 EXPRESSION TAG SEQADV 2FS2 SER A 144 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS A 145 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS A 146 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS A 147 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS A 148 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS A 149 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS A 150 UNP P76084 EXPRESSION TAG SEQADV 2FS2 SER B 0 UNP P76084 CLONING ARTIFACT SEQADV 2FS2 LEU B 1 UNP P76084 CLONING ARTIFACT SEQADV 2FS2 MSE B 12 UNP P76084 MET 12 MODIFIED RESIDUE SEQADV 2FS2 MSE B 29 UNP P76084 MET 29 MODIFIED RESIDUE SEQADV 2FS2 MSE B 38 UNP P76084 MET 38 MODIFIED RESIDUE SEQADV 2FS2 MSE B 44 UNP P76084 MET 44 MODIFIED RESIDUE SEQADV 2FS2 GLU B 141 UNP P76084 EXPRESSION TAG SEQADV 2FS2 GLY B 142 UNP P76084 EXPRESSION TAG SEQADV 2FS2 GLY B 143 UNP P76084 EXPRESSION TAG SEQADV 2FS2 SER B 144 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS B 145 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS B 146 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS B 147 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS B 148 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS B 149 UNP P76084 EXPRESSION TAG SEQADV 2FS2 HIS B 150 UNP P76084 EXPRESSION TAG SEQRES 1 A 151 SER LEU SER HIS LYS ALA TRP GLN ASN ALA HIS ALA MSE SEQRES 2 A 151 TYR GLU ASN ASP ALA CYS ALA LYS ALA LEU GLY ILE ASP SEQRES 3 A 151 ILE ILE SER MSE ASP GLU GLY PHE ALA VAL VAL THR MSE SEQRES 4 A 151 THR VAL THR ALA GLN MSE LEU ASN GLY HIS GLN SER CYS SEQRES 5 A 151 HIS GLY GLY GLN LEU PHE SER LEU ALA ASP THR ALA PHE SEQRES 6 A 151 ALA TYR ALA CYS ASN SER GLN GLY LEU ALA ALA VAL ALA SEQRES 7 A 151 SER ALA CYS THR ILE ASP PHE LEU ARG PRO GLY PHE ALA SEQRES 8 A 151 GLY ASP THR LEU THR ALA THR ALA GLN VAL ARG HIS GLN SEQRES 9 A 151 GLY LYS GLN THR GLY VAL TYR ASP ILE GLU ILE VAL ASN SEQRES 10 A 151 GLN GLN GLN LYS THR VAL ALA LEU PHE ARG GLY LYS SER SEQRES 11 A 151 HIS ARG ILE GLY GLY THR ILE THR GLY GLU ALA GLU GLY SEQRES 12 A 151 GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 151 SER LEU SER HIS LYS ALA TRP GLN ASN ALA HIS ALA MSE SEQRES 2 B 151 TYR GLU ASN ASP ALA CYS ALA LYS ALA LEU GLY ILE ASP SEQRES 3 B 151 ILE ILE SER MSE ASP GLU GLY PHE ALA VAL VAL THR MSE SEQRES 4 B 151 THR VAL THR ALA GLN MSE LEU ASN GLY HIS GLN SER CYS SEQRES 5 B 151 HIS GLY GLY GLN LEU PHE SER LEU ALA ASP THR ALA PHE SEQRES 6 B 151 ALA TYR ALA CYS ASN SER GLN GLY LEU ALA ALA VAL ALA SEQRES 7 B 151 SER ALA CYS THR ILE ASP PHE LEU ARG PRO GLY PHE ALA SEQRES 8 B 151 GLY ASP THR LEU THR ALA THR ALA GLN VAL ARG HIS GLN SEQRES 9 B 151 GLY LYS GLN THR GLY VAL TYR ASP ILE GLU ILE VAL ASN SEQRES 10 B 151 GLN GLN GLN LYS THR VAL ALA LEU PHE ARG GLY LYS SER SEQRES 11 B 151 HIS ARG ILE GLY GLY THR ILE THR GLY GLU ALA GLU GLY SEQRES 12 B 151 GLY SER HIS HIS HIS HIS HIS HIS MODRES 2FS2 MSE A 12 MET SELENOMETHIONINE MODRES 2FS2 MSE A 29 MET SELENOMETHIONINE MODRES 2FS2 MSE A 38 MET SELENOMETHIONINE MODRES 2FS2 MSE A 44 MET SELENOMETHIONINE MODRES 2FS2 MSE B 12 MET SELENOMETHIONINE MODRES 2FS2 MSE B 29 MET SELENOMETHIONINE MODRES 2FS2 MSE B 38 MET SELENOMETHIONINE MODRES 2FS2 MSE B 44 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 29 8 HET MSE A 38 8 HET MSE A 44 8 HET MSE B 12 8 HET MSE B 29 8 HET MSE B 38 8 HET MSE B 44 8 HET SO4 A 151 5 HET SO4 A 152 5 HET SO4 B 151 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *79(H2 O) HELIX 1 1 SER A 0 GLY A 23 1 24 HELIX 2 2 THR A 41 LEU A 45 5 5 HELIX 3 3 HIS A 52 SER A 70 1 19 HELIX 4 4 SER B 0 ASN B 15 1 16 HELIX 5 5 ASP B 16 LEU B 22 1 7 HELIX 6 6 THR B 41 LEU B 45 5 5 HELIX 7 7 HIS B 52 SER B 70 1 19 SHEET 1 A12 ASP A 25 ASP A 30 0 SHEET 2 A12 PHE A 33 THR A 39 -1 O THR A 37 N ASP A 25 SHEET 3 A12 THR A 93 GLN A 103 -1 O LEU A 94 N MSE A 38 SHEET 4 A12 THR A 107 VAL A 115 -1 O VAL A 109 N ARG A 101 SHEET 5 A12 THR A 121 HIS A 130 -1 O PHE A 125 N ILE A 112 SHEET 6 A12 VAL A 76 PHE A 84 -1 N VAL A 76 O HIS A 130 SHEET 7 A12 ALA B 75 PHE B 84 -1 O ILE B 82 N CYS A 80 SHEET 8 A12 THR B 121 ARG B 131 -1 O LYS B 128 N ALA B 79 SHEET 9 A12 THR B 107 VAL B 115 -1 N TYR B 110 O GLY B 127 SHEET 10 A12 THR B 93 GLN B 103 -1 N ARG B 101 O VAL B 109 SHEET 11 A12 PHE B 33 THR B 39 -1 N ALA B 34 O ALA B 98 SHEET 12 A12 ASP B 25 ASP B 30 -1 N ASP B 30 O PHE B 33 LINK C ALA A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N TYR A 13 1555 1555 1.36 LINK C SER A 28 N MSE A 29 1555 1555 1.31 LINK C MSE A 29 N ASP A 30 1555 1555 1.32 LINK C THR A 37 N MSE A 38 1555 1555 1.32 LINK C MSE A 38 N THR A 39 1555 1555 1.34 LINK C GLN A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LEU A 45 1555 1555 1.33 LINK C ALA B 11 N MSE B 12 1555 1555 1.34 LINK C MSE B 12 N TYR B 13 1555 1555 1.33 LINK C SER B 28 N MSE B 29 1555 1555 1.32 LINK C MSE B 29 N ASP B 30 1555 1555 1.30 LINK C THR B 37 N MSE B 38 1555 1555 1.31 LINK C MSE B 38 N THR B 39 1555 1555 1.31 LINK C GLN B 43 N MSE B 44 1555 1555 1.31 LINK C MSE B 44 N LEU B 45 1555 1555 1.34 SITE 1 AC1 4 GLY B 104 LYS B 105 GLN B 106 THR B 107 SITE 1 AC2 4 GLY A 104 LYS A 105 GLN A 106 THR A 107 SITE 1 AC3 4 ARG A 86 LYS A 120 THR A 121 HIS B 102 CRYST1 69.847 69.847 117.168 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014317 0.008266 0.000000 0.00000 SCALE2 0.000000 0.016532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008535 0.00000