HEADER STRUCTURAL PROTEIN, PROTEIN BINDING 29-JAN-06 2FV4 TITLE NMR SOLUTION STRUCTURE OF THE YEAST KINETOCHORE SPC24/SPC25 GLOBULAR TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 25.2 KDA PROTEIN IN AFG3-SEB2 INTERGENIC COMPND 3 REGION; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SPC25P GLOBULAR DOMAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HYPOTHETICAL 24.6 KDA PROTEIN IN ILV2-ADE17 INTERGENIC COMPND 9 REGION; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SPC24P GLOBULAR DOMAIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YER018C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3ATR; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: YMR117C, YM9718.16C; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET3ATR KEYWDS ALPHA-BETA, COMPLEX, COILED-COIL, STRUCTURAL PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.SCHNELL,J.J.CHOU REVDAT 4 09-MAR-22 2FV4 1 REMARK SEQADV REVDAT 3 24-FEB-09 2FV4 1 VERSN REVDAT 2 20-JUN-06 2FV4 1 JRNL REVDAT 1 13-JUN-06 2FV4 0 JRNL AUTH R.R.WEI,J.R.SCHNELL,N.A.LARSEN,P.K.SORGER,J.J.CHOU, JRNL AUTH 2 S.C.HARRISON JRNL TITL STRUCTURE OF A CENTRAL COMPONENT OF THE YEAST KINETOCHORE: JRNL TITL 2 THE SPC24P/SPC25P GLOBULAR DOMAIN. JRNL REF STRUCTURE V. 6 1003 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16765893 JRNL DOI 10.1016/J.STR.2006.04.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.0, XPLOR-NIH 2.11 REMARK 3 AUTHORS : FRANK DELAGLIO (NMRPIPE), CHARLES SCHWIETERS REMARK 3 (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FV4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036348. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 MM SODIUM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM SPC25G U-15N,13C,85%-2H, REMARK 210 1.5 MM SPC24G NATURAL ABUNDANCE REMARK 210 ISOTOPES, 95% H2O, 5% D2O; 1.5 REMARK 210 MM SPC25G NATURAL ABUNDANCE REMARK 210 ISOTOPES, 1.5 MM SPC24G U-15N, REMARK 210 13C,85%-2H, 95% H2O, 5% D2O; 1.5 REMARK 210 MM SPC25G U-15N,13C, 1.5 MM REMARK 210 SPC24G NATURAL ABUNDANCE REMARK 210 ISOTOPES, 95% H2O, 5% D2O; 1.5 REMARK 210 MM SPC25G NATURAL ABUNDANCE REMARK 210 ISOTOPES, 1.5 MM SPC24G U-15N, REMARK 210 13C, 95% H2O, 5% D2O; 1.5 MM REMARK 210 SPC25G U-15N,13C, 85%-2H, 1.5 MM REMARK 210 SPC24G NATURAL ABUNDANCE REMARK 210 ISOTOPES, 50 MG/ML PF1 PHAGE, 95% REMARK 210 H2O, 5% D2O; 1.5 MM SPC25G REMARK 210 NATURAL ABUNDANCE ISOTOPES, 1.5 REMARK 210 MM SPC24G U-15N,13C, 50 MG/ML REMARK 210 PF1 PHAGE, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TROSY VERSIONS OF HNCA, HNCACB REMARK 210 AND HNCO; 3D 15N-TOCSY-HSQC.; 3D REMARK 210 15N-NOESY, 3D 13C-NOESY, AND 3D REMARK 210 15N-EDITED 13C-FILTERED NOESY; REMARK 210 2D SPIN ECHO DIFFERENCE REMARK 210 EXPERIMENTS FOR MEASURING THREE- REMARK 210 BOND J(C'C) AND J(NC); STANDARD REMARK 210 HNCO-BASED 3D EXPERIMENTS FOR REMARK 210 MEASURING ONE-BOND J(NH) AND J(C' REMARK 210 CA).; 3D 15N-NOESY, 3D 13C-NOESY, REMARK 210 AND 3D 15N-EDITED 13C-FILTERED REMARK 210 NOESY; 2D SPIN ECHO DIFFERENCE REMARK 210 EXPERIMENTS FOR MEASURING THREE- REMARK 210 BOND J(C'C), J(NC) AND J(CC); REMARK 210 STANDARD HNCO-BASED 3D REMARK 210 EXPERIMENTS FOR MEASURING ONE- REMARK 210 BOND J(NH).; STANDARD HNCO-BASED REMARK 210 3D EXPERIMENTS FOR MEASURING REMARK 210 RESIDUAL ONE-BOND D(NH) AND D(C' REMARK 210 CA).; STANDARD HNCO-BASED 3D REMARK 210 EXPERIMENTS FOR MEASURING REMARK 210 RESIDUAL ONE-BOND D(NH). REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 HIS A 126 REMARK 465 MET A 127 REMARK 465 ALA A 128 REMARK 465 ALA A 129 REMARK 465 GLN A 130 REMARK 465 SER A 131 REMARK 465 GLY A 132 REMARK 465 MET B 137 REMARK 465 ALA B 138 REMARK 465 LYS B 139 REMARK 465 VAL B 140 REMARK 465 ILE B 141 REMARK 465 GLU B 142 REMARK 465 PRO B 143 REMARK 465 GLU B 144 REMARK 465 LEU B 145 REMARK 465 GLU B 146 REMARK 465 GLU B 147 REMARK 465 GLN B 148 REMARK 465 SER B 149 REMARK 465 ALA B 150 REMARK 465 VAL B 151 REMARK 465 THR B 152 REMARK 465 PRO B 153 REMARK 465 GLU B 154 REMARK 465 ALA B 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 154 -72.13 176.19 REMARK 500 1 ASP A 155 -10.56 -165.08 REMARK 500 1 ASP A 165 89.72 -152.33 REMARK 500 1 ASP A 166 -76.59 27.90 REMARK 500 1 ARG A 168 102.77 57.56 REMARK 500 1 HIS A 176 -102.51 -85.40 REMARK 500 1 VAL A 180 -5.25 -58.44 REMARK 500 1 ILE A 181 85.87 -53.85 REMARK 500 1 PRO A 186 -100.30 -83.94 REMARK 500 1 ALA A 187 30.32 161.90 REMARK 500 1 LEU A 188 -76.86 -156.78 REMARK 500 1 LEU A 206 -13.36 -47.50 REMARK 500 1 GLU B 157 -4.77 -53.39 REMARK 500 1 ASN B 176 26.61 -174.14 REMARK 500 1 ASP B 186 -168.27 44.54 REMARK 500 1 ASN B 188 -99.92 -135.62 REMARK 500 1 ASN B 197 -167.72 43.89 REMARK 500 2 SER A 154 -118.22 -60.78 REMARK 500 2 ASP A 155 -91.46 50.05 REMARK 500 2 HIS A 157 102.14 -54.80 REMARK 500 2 ASP A 165 -159.76 -102.99 REMARK 500 2 SER A 167 -5.45 70.38 REMARK 500 2 ARG A 168 112.46 64.84 REMARK 500 2 MET A 175 -83.78 54.07 REMARK 500 2 HIS A 179 -144.32 -151.45 REMARK 500 2 ILE A 181 102.02 -49.41 REMARK 500 2 PRO A 186 -90.07 -85.44 REMARK 500 2 ALA A 187 35.42 160.72 REMARK 500 2 LEU A 188 -134.60 -151.86 REMARK 500 2 GLU B 157 -6.18 -52.63 REMARK 500 2 LEU B 164 -70.88 -66.06 REMARK 500 2 ASN B 176 26.64 -174.57 REMARK 500 2 ASN B 185 -168.46 -55.10 REMARK 500 2 ASP B 186 85.09 -55.35 REMARK 500 2 ASN B 188 -46.52 -136.54 REMARK 500 2 ASN B 197 -175.72 49.19 REMARK 500 3 ASP A 165 -94.69 60.76 REMARK 500 3 ASP A 166 83.11 -32.13 REMARK 500 3 SER A 167 46.74 24.07 REMARK 500 3 ARG A 168 90.70 51.53 REMARK 500 3 MET A 175 12.42 51.58 REMARK 500 3 HIS A 176 9.15 -168.23 REMARK 500 3 PRO A 186 -99.66 -87.69 REMARK 500 3 ALA A 187 31.77 161.55 REMARK 500 3 LEU A 188 -156.67 -150.62 REMARK 500 3 SER A 192 -70.56 -70.76 REMARK 500 3 ASN B 176 26.69 -176.21 REMARK 500 3 ASN B 185 -113.18 -140.97 REMARK 500 3 ASN B 188 -68.82 74.98 REMARK 500 3 ASP B 195 -70.90 -146.80 REMARK 500 REMARK 500 THIS ENTRY HAS 335 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FTX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YEAST KINETOCHORE SPC24/SPC25 GLOBULAR REMARK 900 DOMAIN DBREF 2FV4 A 128 221 UNP P40014 YEK8_YEAST 128 221 DBREF 2FV4 B 138 213 UNP Q04477 YM06_YEAST 138 213 SEQADV 2FV4 GLY A 124 UNP P40014 CLONING ARTIFACT SEQADV 2FV4 SER A 125 UNP P40014 CLONING ARTIFACT SEQADV 2FV4 HIS A 126 UNP P40014 CLONING ARTIFACT SEQADV 2FV4 MET A 127 UNP P40014 CLONING ARTIFACT SEQADV 2FV4 MET B 137 UNP Q04477 CLONING ARTIFACT SEQRES 1 A 98 GLY SER HIS MET ALA ALA GLN SER GLY ASN ASP ALA ALA SEQRES 2 A 98 GLU VAL ALA LEU TYR GLU ARG LEU LEU GLN LEU ARG VAL SEQRES 3 A 98 LEU PRO GLY ALA SER ASP VAL HIS ASP VAL ARG PHE VAL SEQRES 4 A 98 PHE GLY ASP ASP SER ARG CYS TRP ILE GLU VAL ALA MET SEQRES 5 A 98 HIS GLY ASP HIS VAL ILE GLY ASN SER HIS PRO ALA LEU SEQRES 6 A 98 ASP PRO LYS SER ARG ALA THR LEU GLU HIS VAL LEU THR SEQRES 7 A 98 VAL GLN GLY ASP LEU ALA ALA PHE LEU VAL VAL ALA ARG SEQRES 8 A 98 ASP MET LEU LEU ALA SER LEU SEQRES 1 B 77 MET ALA LYS VAL ILE GLU PRO GLU LEU GLU GLU GLN SER SEQRES 2 B 77 ALA VAL THR PRO GLU ALA ASN GLU ASN ILE LEU LYS LEU SEQRES 3 B 77 LYS LEU TYR ARG SER LEU GLY VAL ILE LEU ASP LEU GLU SEQRES 4 B 77 ASN ASP GLN VAL LEU ILE ASN ARG LYS ASN ASP GLY ASN SEQRES 5 B 77 ILE ASP ILE LEU PRO LEU ASP ASN ASN LEU SER ASP PHE SEQRES 6 B 77 TYR LYS THR LYS TYR ILE TRP GLU ARG LEU GLY LYS HELIX 1 1 ASN A 133 GLN A 146 1 14 HELIX 2 2 PRO A 190 GLY A 204 1 15 HELIX 3 3 ASP A 205 LEU A 221 1 17 HELIX 4 4 GLU B 157 LEU B 168 1 12 HELIX 5 5 SER B 199 GLY B 212 1 14 SHEET 1 A 4 LEU A 147 GLY A 152 0 SHEET 2 A 4 ASP A 158 PHE A 163 -1 O ASP A 158 N GLY A 152 SHEET 3 A 4 CYS A 169 GLU A 172 -1 O CYS A 169 N PHE A 163 SHEET 4 A 4 SER A 184 HIS A 185 -1 O HIS A 185 N TRP A 170 SHEET 1 B 3 VAL B 170 ASP B 173 0 SHEET 2 B 3 GLN B 178 ASN B 182 -1 O LEU B 180 N ILE B 171 SHEET 3 B 3 ILE B 189 PRO B 193 -1 O LEU B 192 N VAL B 179 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1