data_2FV6 # _entry.id 2FV6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2FV6 RCSB RCSB036350 WWPDB D_1000036350 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2007-12-25 _pdbx_database_PDB_obs_spr.pdb_id 2JW6 _pdbx_database_PDB_obs_spr.replace_pdb_id 2FV6 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2FV6 _pdbx_database_status.recvd_initial_deposition_date 2006-01-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Spadaccini, R.' 1 'Perrin, H.' 2 'Bottomley, M.J.' 3 'Ansieau, S.' 4 'Sattler, M.' 5 # _citation.id primary _citation.title 'Structure and Functional Analysis of the MYND Domain' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 358 _citation.page_first 498 _citation.page_last 508 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16527309 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.01.087 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Spadaccini, R.' 1 primary 'Perrin, H.' 2 primary 'Bottomley, M.J.' 3 primary 'Ansieau, S.' 4 primary 'Sattler, M.' 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Deformed epidermal autoregulatory factor 1 homolog' 5878.600 1 ? ? 'MYND DOMAIN(residues 4-52)' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nuclear DEAF-1 related transcriptional regulator, NUDR, Suppressin, Zinc finger MYND domain containing protein 5' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAMDAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA _entity_poly.pdbx_seq_one_letter_code_can GAMDAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 ALA n 1 6 GLU n 1 7 ARG n 1 8 LYS n 1 9 GLU n 1 10 GLN n 1 11 SER n 1 12 CYS n 1 13 VAL n 1 14 ASN n 1 15 CYS n 1 16 GLY n 1 17 ARG n 1 18 GLU n 1 19 ALA n 1 20 MET n 1 21 SER n 1 22 GLU n 1 23 CYS n 1 24 THR n 1 25 GLY n 1 26 CYS n 1 27 HIS n 1 28 LYS n 1 29 VAL n 1 30 ASN n 1 31 TYR n 1 32 CYS n 1 33 SER n 1 34 THR n 1 35 PHE n 1 36 CYS n 1 37 GLN n 1 38 ARG n 1 39 LYS n 1 40 ASP n 1 41 TRP n 1 42 LYS n 1 43 ASP n 1 44 HIS n 1 45 GLN n 1 46 HIS n 1 47 ILE n 1 48 CYS n 1 49 GLY n 1 50 GLN n 1 51 SER n 1 52 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet24d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEAF1_HUMAN _struct_ref.pdbx_db_accession O75398 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA _struct_ref.pdbx_align_begin 496 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FV6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75398 _struct_ref_seq.db_align_beg 496 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 544 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 496 _struct_ref_seq.pdbx_auth_seq_align_end 544 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FV6 GLY A 1 ? UNP O75398 ? ? 'CLONING ARTIFACT' 493 1 1 2FV6 ALA A 2 ? UNP O75398 ? ? 'CLONING ARTIFACT' 494 2 1 2FV6 MET A 3 ? UNP O75398 ? ? 'CLONING ARTIFACT' 495 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 3 1 HNHA 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 295 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength '20mM phosphate, 100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0,5-1mM MYND; 15N or 13C-15N; 20mM phosphate buffer NA; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 600 ? # _pdbx_nmr_refine.entry_id 2FV6 _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ;THE NMR ENSEMBLE HAS BEEN REFINED IN A SHELL OF WATER MOLECULES. REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE AND LINGE ET AL. Structures were calculated with ARIA 1.2 in combination with CNS. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2FV6 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2FV6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing NMRPipe 3.0 Delaglio 1 'data analysis' NMRVIEW 5.0.3 Johnsonn 2 'structure solution' ARIA 1.2 Nilges 3 refinement ARIA 1.2 Nilges 4 # _exptl.entry_id 2FV6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2FV6 _struct.title 'Solution structure of the MYND domain' _struct.pdbx_descriptor 'Deformed epidermal autoregulatory factor 1 homolog' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FV6 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Zinc finger domain, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 33 ? ASP A 40 ? SER A 525 ASP A 532 1 ? 8 HELX_P HELX_P2 2 ASP A 40 ? CYS A 48 ? ASP A 532 CYS A 540 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 12 SG ? ? A ZN 101 A CYS 504 1_555 ? ? ? ? ? ? ? 2.262 ? metalc2 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 15 SG ? ? A ZN 101 A CYS 507 1_555 ? ? ? ? ? ? ? 2.285 ? metalc3 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 23 SG ? ? A ZN 101 A CYS 515 1_555 ? ? ? ? ? ? ? 2.251 ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 26 SG ? ? A ZN 101 A CYS 518 1_555 ? ? ? ? ? ? ? 2.277 ? metalc5 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 44 NE2 ? ? A ZN 102 A HIS 536 1_555 ? ? ? ? ? ? ? 2.016 ? metalc6 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 48 SG ? ? A ZN 102 A CYS 540 1_555 ? ? ? ? ? ? ? 2.315 ? metalc7 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 32 SG ? ? A ZN 102 A CYS 524 1_555 ? ? ? ? ? ? ? 2.324 ? metalc8 metalc ? ? C ZN . ZN ? ? ? 1_555 A CYS 36 SG ? ? A ZN 102 A CYS 528 1_555 ? ? ? ? ? ? ? 2.300 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2FV6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FV6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 493 ? ? ? A . n A 1 2 ALA 2 494 ? ? ? A . n A 1 3 MET 3 495 ? ? ? A . n A 1 4 ASP 4 496 ? ? ? A . n A 1 5 ALA 5 497 ? ? ? A . n A 1 6 GLU 6 498 ? ? ? A . n A 1 7 ARG 7 499 ? ? ? A . n A 1 8 LYS 8 500 ? ? ? A . n A 1 9 GLU 9 501 ? ? ? A . n A 1 10 GLN 10 502 ? ? ? A . n A 1 11 SER 11 503 503 SER SER A . n A 1 12 CYS 12 504 504 CYS CYS A . n A 1 13 VAL 13 505 505 VAL VAL A . n A 1 14 ASN 14 506 506 ASN ASN A . n A 1 15 CYS 15 507 507 CYS CYS A . n A 1 16 GLY 16 508 508 GLY GLY A . n A 1 17 ARG 17 509 509 ARG ARG A . n A 1 18 GLU 18 510 510 GLU GLU A . n A 1 19 ALA 19 511 511 ALA ALA A . n A 1 20 MET 20 512 512 MET MET A . n A 1 21 SER 21 513 513 SER SER A . n A 1 22 GLU 22 514 514 GLU GLU A . n A 1 23 CYS 23 515 515 CYS CYS A . n A 1 24 THR 24 516 516 THR THR A . n A 1 25 GLY 25 517 517 GLY GLY A . n A 1 26 CYS 26 518 518 CYS CYS A . n A 1 27 HIS 27 519 519 HIS HIS A . n A 1 28 LYS 28 520 520 LYS LYS A . n A 1 29 VAL 29 521 521 VAL VAL A . n A 1 30 ASN 30 522 522 ASN ASN A . n A 1 31 TYR 31 523 523 TYR TYR A . n A 1 32 CYS 32 524 524 CYS CYS A . n A 1 33 SER 33 525 525 SER SER A . n A 1 34 THR 34 526 526 THR THR A . n A 1 35 PHE 35 527 527 PHE PHE A . n A 1 36 CYS 36 528 528 CYS CYS A . n A 1 37 GLN 37 529 529 GLN GLN A . n A 1 38 ARG 38 530 530 ARG ARG A . n A 1 39 LYS 39 531 531 LYS LYS A . n A 1 40 ASP 40 532 532 ASP ASP A . n A 1 41 TRP 41 533 533 TRP TRP A . n A 1 42 LYS 42 534 534 LYS LYS A . n A 1 43 ASP 43 535 535 ASP ASP A . n A 1 44 HIS 44 536 536 HIS HIS A . n A 1 45 GLN 45 537 537 GLN GLN A . n A 1 46 HIS 46 538 538 HIS HIS A . n A 1 47 ILE 47 539 539 ILE ILE A . n A 1 48 CYS 48 540 540 CYS CYS A . n A 1 49 GLY 49 541 541 GLY GLY A . n A 1 50 GLN 50 542 542 GLN GLN A . n A 1 51 SER 51 543 543 SER SER A . n A 1 52 ALA 52 544 544 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 101 101 ZN ZN A . C 2 ZN 1 102 102 ZN ZN A . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 12 ? A CYS 504 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 15 ? A CYS 507 ? 1_555 109.6 ? 2 SG ? A CYS 12 ? A CYS 504 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 23 ? A CYS 515 ? 1_555 110.6 ? 3 SG ? A CYS 15 ? A CYS 507 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 23 ? A CYS 515 ? 1_555 107.5 ? 4 SG ? A CYS 12 ? A CYS 504 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 26 ? A CYS 518 ? 1_555 109.3 ? 5 SG ? A CYS 15 ? A CYS 507 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 26 ? A CYS 518 ? 1_555 113.8 ? 6 SG ? A CYS 23 ? A CYS 515 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 26 ? A CYS 518 ? 1_555 106.1 ? 7 NE2 ? A HIS 44 ? A HIS 536 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 SG ? A CYS 48 ? A CYS 540 ? 1_555 109.2 ? 8 NE2 ? A HIS 44 ? A HIS 536 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 SG ? A CYS 32 ? A CYS 524 ? 1_555 112.4 ? 9 SG ? A CYS 48 ? A CYS 540 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 SG ? A CYS 32 ? A CYS 524 ? 1_555 107.7 ? 10 NE2 ? A HIS 44 ? A HIS 536 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 SG ? A CYS 36 ? A CYS 528 ? 1_555 110.2 ? 11 SG ? A CYS 48 ? A CYS 540 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 SG ? A CYS 36 ? A CYS 528 ? 1_555 107.5 ? 12 SG ? A CYS 32 ? A CYS 524 ? 1_555 ZN ? C ZN . ? A ZN 102 ? 1_555 SG ? A CYS 36 ? A CYS 528 ? 1_555 109.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-28 2 'Structure model' 1 1 2007-12-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.23 2 2 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.29 3 3 H A SER 525 ? ? 2HB A CYS 528 ? ? 1.30 4 4 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.17 5 4 H A SER 525 ? ? 2HB A CYS 528 ? ? 1.33 6 5 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.34 7 6 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.22 8 6 H A SER 525 ? ? 2HB A CYS 528 ? ? 1.34 9 7 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.19 10 8 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.29 11 9 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.21 12 10 HD2 A HIS 536 ? ? 1HB A CYS 540 ? ? 1.18 13 10 H A SER 525 ? ? 2HB A CYS 528 ? ? 1.34 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 2 CE1 A TYR 523 ? ? CZ A TYR 523 ? ? 1.482 1.381 0.101 0.013 N 2 2 CZ A TYR 523 ? ? CE2 A TYR 523 ? ? 1.275 1.381 -0.106 0.013 N 3 3 CE1 A TYR 523 ? ? CZ A TYR 523 ? ? 1.505 1.381 0.124 0.013 N 4 3 CZ A TYR 523 ? ? CE2 A TYR 523 ? ? 1.250 1.381 -0.131 0.013 N 5 4 CE1 A TYR 523 ? ? CZ A TYR 523 ? ? 1.503 1.381 0.122 0.013 N 6 4 CZ A TYR 523 ? ? CE2 A TYR 523 ? ? 1.255 1.381 -0.126 0.013 N 7 5 CE1 A TYR 523 ? ? CZ A TYR 523 ? ? 1.503 1.381 0.122 0.013 N 8 5 CZ A TYR 523 ? ? CE2 A TYR 523 ? ? 1.256 1.381 -0.125 0.013 N 9 7 CE1 A TYR 523 ? ? CZ A TYR 523 ? ? 1.483 1.381 0.102 0.013 N 10 7 CZ A TYR 523 ? ? CE2 A TYR 523 ? ? 1.276 1.381 -0.105 0.013 N 11 8 CE1 A TYR 523 ? ? CZ A TYR 523 ? ? 1.466 1.381 0.085 0.013 N 12 8 CZ A TYR 523 ? ? CE2 A TYR 523 ? ? 1.301 1.381 -0.080 0.013 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 506 ? ? -130.79 -35.22 2 1 ARG A 509 ? ? -166.34 -123.84 3 1 HIS A 519 ? ? -151.92 -44.12 4 1 ASN A 522 ? ? -163.30 84.81 5 1 GLN A 542 ? ? -96.83 39.93 6 1 SER A 543 ? ? -152.61 45.23 7 2 CYS A 507 ? ? -68.87 55.06 8 2 THR A 516 ? ? -75.15 37.68 9 2 HIS A 519 ? ? -151.92 -44.35 10 2 ASN A 522 ? ? -162.19 85.34 11 2 TRP A 533 ? ? -39.19 -39.92 12 3 ASN A 506 ? ? -133.38 -38.56 13 3 ARG A 509 ? ? 57.23 -152.59 14 3 ALA A 511 ? ? 70.62 113.02 15 3 MET A 512 ? ? -151.96 -67.37 16 3 THR A 516 ? ? -80.60 38.12 17 3 HIS A 519 ? ? 63.62 -9.06 18 3 TYR A 523 ? ? 179.82 161.14 19 3 TRP A 533 ? ? -39.35 -38.31 20 3 SER A 543 ? ? 71.32 -42.58 21 4 CYS A 507 ? ? -68.92 52.36 22 4 HIS A 519 ? ? 160.66 -17.40 23 4 ASN A 522 ? ? -164.25 85.16 24 5 ASN A 506 ? ? -135.74 -48.05 25 5 ALA A 511 ? ? 57.90 78.33 26 5 MET A 512 ? ? -137.00 -35.46 27 5 HIS A 519 ? ? -176.49 -39.10 28 5 ASN A 522 ? ? -152.50 86.04 29 5 TYR A 523 ? ? -177.41 148.07 30 5 GLN A 542 ? ? -96.95 44.50 31 6 CYS A 507 ? ? -63.64 8.27 32 6 THR A 516 ? ? -78.50 47.78 33 6 HIS A 519 ? ? -151.28 -39.23 34 6 ASN A 522 ? ? -163.93 87.01 35 6 TRP A 533 ? ? -39.28 -38.73 36 7 ASN A 506 ? ? -145.70 -38.68 37 7 ALA A 511 ? ? 63.41 67.32 38 7 CYS A 515 ? ? -59.25 171.49 39 7 THR A 516 ? ? -76.01 45.96 40 7 HIS A 519 ? ? -174.99 -35.05 41 7 CYS A 524 ? ? -157.39 39.34 42 7 GLN A 542 ? ? -98.57 46.51 43 8 ASN A 506 ? ? -140.89 -40.70 44 8 ALA A 511 ? ? 61.70 -148.61 45 8 MET A 512 ? ? 83.80 -25.48 46 8 HIS A 519 ? ? 177.06 -16.44 47 8 TYR A 523 ? ? -174.55 149.12 48 8 CYS A 524 ? ? -158.96 39.41 49 9 ASN A 506 ? ? -131.30 -39.08 50 9 ARG A 509 ? ? 52.98 -133.25 51 9 ALA A 511 ? ? 64.15 84.47 52 9 MET A 512 ? ? -133.52 -42.90 53 9 HIS A 519 ? ? 179.63 -21.46 54 9 ASN A 522 ? ? -160.18 84.74 55 9 TRP A 533 ? ? -39.99 -35.93 56 9 GLN A 542 ? ? -101.86 41.31 57 9 SER A 543 ? ? -89.54 41.14 58 10 ASN A 506 ? ? -153.94 -36.63 59 10 CYS A 507 ? ? -69.17 50.68 60 10 HIS A 519 ? ? 162.07 -15.90 61 10 ASN A 522 ? ? -150.95 84.47 62 10 TYR A 523 ? ? 179.86 151.69 63 10 TRP A 533 ? ? -38.93 -36.53 64 10 SER A 543 ? ? -149.12 20.34 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 8 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 523 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.049 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 493 ? A GLY 1 2 1 Y 1 A ALA 494 ? A ALA 2 3 1 Y 1 A MET 495 ? A MET 3 4 1 Y 1 A ASP 496 ? A ASP 4 5 1 Y 1 A ALA 497 ? A ALA 5 6 1 Y 1 A GLU 498 ? A GLU 6 7 1 Y 1 A ARG 499 ? A ARG 7 8 1 Y 1 A LYS 500 ? A LYS 8 9 1 Y 1 A GLU 501 ? A GLU 9 10 1 Y 1 A GLN 502 ? A GLN 10 11 2 Y 1 A GLY 493 ? A GLY 1 12 2 Y 1 A ALA 494 ? A ALA 2 13 2 Y 1 A MET 495 ? A MET 3 14 2 Y 1 A ASP 496 ? A ASP 4 15 2 Y 1 A ALA 497 ? A ALA 5 16 2 Y 1 A GLU 498 ? A GLU 6 17 2 Y 1 A ARG 499 ? A ARG 7 18 2 Y 1 A LYS 500 ? A LYS 8 19 2 Y 1 A GLU 501 ? A GLU 9 20 2 Y 1 A GLN 502 ? A GLN 10 21 3 Y 1 A GLY 493 ? A GLY 1 22 3 Y 1 A ALA 494 ? A ALA 2 23 3 Y 1 A MET 495 ? A MET 3 24 3 Y 1 A ASP 496 ? A ASP 4 25 3 Y 1 A ALA 497 ? A ALA 5 26 3 Y 1 A GLU 498 ? A GLU 6 27 3 Y 1 A ARG 499 ? A ARG 7 28 3 Y 1 A LYS 500 ? A LYS 8 29 3 Y 1 A GLU 501 ? A GLU 9 30 3 Y 1 A GLN 502 ? A GLN 10 31 4 Y 1 A GLY 493 ? A GLY 1 32 4 Y 1 A ALA 494 ? A ALA 2 33 4 Y 1 A MET 495 ? A MET 3 34 4 Y 1 A ASP 496 ? A ASP 4 35 4 Y 1 A ALA 497 ? A ALA 5 36 4 Y 1 A GLU 498 ? A GLU 6 37 4 Y 1 A ARG 499 ? A ARG 7 38 4 Y 1 A LYS 500 ? A LYS 8 39 4 Y 1 A GLU 501 ? A GLU 9 40 4 Y 1 A GLN 502 ? A GLN 10 41 5 Y 1 A GLY 493 ? A GLY 1 42 5 Y 1 A ALA 494 ? A ALA 2 43 5 Y 1 A MET 495 ? A MET 3 44 5 Y 1 A ASP 496 ? A ASP 4 45 5 Y 1 A ALA 497 ? A ALA 5 46 5 Y 1 A GLU 498 ? A GLU 6 47 5 Y 1 A ARG 499 ? A ARG 7 48 5 Y 1 A LYS 500 ? A LYS 8 49 5 Y 1 A GLU 501 ? A GLU 9 50 5 Y 1 A GLN 502 ? A GLN 10 51 6 Y 1 A GLY 493 ? A GLY 1 52 6 Y 1 A ALA 494 ? A ALA 2 53 6 Y 1 A MET 495 ? A MET 3 54 6 Y 1 A ASP 496 ? A ASP 4 55 6 Y 1 A ALA 497 ? A ALA 5 56 6 Y 1 A GLU 498 ? A GLU 6 57 6 Y 1 A ARG 499 ? A ARG 7 58 6 Y 1 A LYS 500 ? A LYS 8 59 6 Y 1 A GLU 501 ? A GLU 9 60 6 Y 1 A GLN 502 ? A GLN 10 61 7 Y 1 A GLY 493 ? A GLY 1 62 7 Y 1 A ALA 494 ? A ALA 2 63 7 Y 1 A MET 495 ? A MET 3 64 7 Y 1 A ASP 496 ? A ASP 4 65 7 Y 1 A ALA 497 ? A ALA 5 66 7 Y 1 A GLU 498 ? A GLU 6 67 7 Y 1 A ARG 499 ? A ARG 7 68 7 Y 1 A LYS 500 ? A LYS 8 69 7 Y 1 A GLU 501 ? A GLU 9 70 7 Y 1 A GLN 502 ? A GLN 10 71 8 Y 1 A GLY 493 ? A GLY 1 72 8 Y 1 A ALA 494 ? A ALA 2 73 8 Y 1 A MET 495 ? A MET 3 74 8 Y 1 A ASP 496 ? A ASP 4 75 8 Y 1 A ALA 497 ? A ALA 5 76 8 Y 1 A GLU 498 ? A GLU 6 77 8 Y 1 A ARG 499 ? A ARG 7 78 8 Y 1 A LYS 500 ? A LYS 8 79 8 Y 1 A GLU 501 ? A GLU 9 80 8 Y 1 A GLN 502 ? A GLN 10 81 9 Y 1 A GLY 493 ? A GLY 1 82 9 Y 1 A ALA 494 ? A ALA 2 83 9 Y 1 A MET 495 ? A MET 3 84 9 Y 1 A ASP 496 ? A ASP 4 85 9 Y 1 A ALA 497 ? A ALA 5 86 9 Y 1 A GLU 498 ? A GLU 6 87 9 Y 1 A ARG 499 ? A ARG 7 88 9 Y 1 A LYS 500 ? A LYS 8 89 9 Y 1 A GLU 501 ? A GLU 9 90 9 Y 1 A GLN 502 ? A GLN 10 91 10 Y 1 A GLY 493 ? A GLY 1 92 10 Y 1 A ALA 494 ? A ALA 2 93 10 Y 1 A MET 495 ? A MET 3 94 10 Y 1 A ASP 496 ? A ASP 4 95 10 Y 1 A ALA 497 ? A ALA 5 96 10 Y 1 A GLU 498 ? A GLU 6 97 10 Y 1 A ARG 499 ? A ARG 7 98 10 Y 1 A LYS 500 ? A LYS 8 99 10 Y 1 A GLU 501 ? A GLU 9 100 10 Y 1 A GLN 502 ? A GLN 10 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #