HEADER TRANSCRIPTION 30-JAN-06 2FV6 OBSLTE 25-DEC-07 2FV6 2JW6 TITLE SOLUTION STRUCTURE OF THE MYND DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 COMPND 3 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: MYND DOMAIN(RESIDUES 4-52); COMPND 6 SYNONYM: NUCLEAR DEAF-1 RELATED TRANSCRIPTIONAL REGULATOR, COMPND 7 NUDR, SUPPRESSIN, ZINC FINGER MYND DOMAIN CONTAINING COMPND 8 PROTEIN 5; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS ZINC FINGER DOMAIN EXPDTA NMR, 10 STRUCTURES AUTHOR R.SPADACCINI,H.PERRIN,M.J.BOTTOMLEY,S.ANSIEAU,M.SATTLER REVDAT 3 25-DEC-07 2FV6 1 OBSLTE REVDAT 2 09-MAY-06 2FV6 1 JRNL REVDAT 1 28-MAR-06 2FV6 0 JRNL AUTH R.SPADACCINI,H.PERRIN,M.J.BOTTOMLEY,S.ANSIEAU, JRNL AUTH 2 M.SATTLER JRNL TITL STRUCTURE AND FUNCTIONAL ANALYSIS OF THE MYND JRNL TITL 2 DOMAIN JRNL REF J.MOL.BIOL. V. 358 498 2006 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE NMR ENSEMBLE HAS BEEN REFINED IN REMARK 3 A SHELL OF WATER MOLECULES. REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE AND LINGE ET AL. STRUCTURES WERE REMARK 3 CALCULATED WITH ARIA 1.2 IN COMBINATION WITH CNS. REMARK 4 REMARK 4 2FV6 COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-03-17) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE RCSB ID CODE IS RCSB036350. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE, 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0,5-1MM MYND; 15N OR 13C-15N; REMARK 210 20MM PHOSPHATE BUFFER NA; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 3.0, NMRVIEW 5.0.3, REMARK 210 ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 GLY A 493 REMARK 465 1 ALA A 494 REMARK 465 1 MET A 495 REMARK 465 1 ASP A 496 REMARK 465 1 ALA A 497 REMARK 465 1 GLU A 498 REMARK 465 1 ARG A 499 REMARK 465 1 LYS A 500 REMARK 465 1 GLU A 501 REMARK 465 1 GLN A 502 REMARK 465 2 GLY A 493 REMARK 465 2 ALA A 494 REMARK 465 2 MET A 495 REMARK 465 2 ASP A 496 REMARK 465 2 ALA A 497 REMARK 465 2 GLU A 498 REMARK 465 2 ARG A 499 REMARK 465 2 LYS A 500 REMARK 465 2 GLU A 501 REMARK 465 2 GLN A 502 REMARK 465 3 GLY A 493 REMARK 465 3 ALA A 494 REMARK 465 3 MET A 495 REMARK 465 3 ASP A 496 REMARK 465 3 ALA A 497 REMARK 465 3 GLU A 498 REMARK 465 3 ARG A 499 REMARK 465 3 LYS A 500 REMARK 465 3 GLU A 501 REMARK 465 3 GLN A 502 REMARK 465 4 GLY A 493 REMARK 465 4 ALA A 494 REMARK 465 4 MET A 495 REMARK 465 4 ASP A 496 REMARK 465 4 ALA A 497 REMARK 465 4 GLU A 498 REMARK 465 4 ARG A 499 REMARK 465 4 LYS A 500 REMARK 465 4 GLU A 501 REMARK 465 4 GLN A 502 REMARK 465 5 GLY A 493 REMARK 465 5 ALA A 494 REMARK 465 5 MET A 495 REMARK 465 5 ASP A 496 REMARK 465 5 ALA A 497 REMARK 465 5 GLU A 498 REMARK 465 5 ARG A 499 REMARK 465 5 LYS A 500 REMARK 465 5 GLU A 501 REMARK 465 5 GLN A 502 REMARK 465 6 GLY A 493 REMARK 465 6 ALA A 494 REMARK 465 6 MET A 495 REMARK 465 6 ASP A 496 REMARK 465 6 ALA A 497 REMARK 465 6 GLU A 498 REMARK 465 6 ARG A 499 REMARK 465 6 LYS A 500 REMARK 465 6 GLU A 501 REMARK 465 6 GLN A 502 REMARK 465 7 GLY A 493 REMARK 465 7 ALA A 494 REMARK 465 7 MET A 495 REMARK 465 7 ASP A 496 REMARK 465 7 ALA A 497 REMARK 465 7 GLU A 498 REMARK 465 7 ARG A 499 REMARK 465 7 LYS A 500 REMARK 465 7 GLU A 501 REMARK 465 7 GLN A 502 REMARK 465 8 GLY A 493 REMARK 465 8 ALA A 494 REMARK 465 8 MET A 495 REMARK 465 8 ASP A 496 REMARK 465 8 ALA A 497 REMARK 465 8 GLU A 498 REMARK 465 8 ARG A 499 REMARK 465 8 LYS A 500 REMARK 465 8 GLU A 501 REMARK 465 8 GLN A 502 REMARK 465 9 GLY A 493 REMARK 465 9 ALA A 494 REMARK 465 9 MET A 495 REMARK 465 9 ASP A 496 REMARK 465 9 ALA A 497 REMARK 465 9 GLU A 498 REMARK 465 9 ARG A 499 REMARK 465 9 LYS A 500 REMARK 465 9 GLU A 501 REMARK 465 9 GLN A 502 REMARK 465 10 GLY A 493 REMARK 465 10 ALA A 494 REMARK 465 10 MET A 495 REMARK 465 10 ASP A 496 REMARK 465 10 ALA A 497 REMARK 465 10 GLU A 498 REMARK 465 10 ARG A 499 REMARK 465 10 LYS A 500 REMARK 465 10 GLU A 501 REMARK 465 10 GLN A 502 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 TYR A 523 CE1 TYR A 523 CZ 0.104 REMARK 500 2 TYR A 523 CZ TYR A 523 CE2 -0.103 REMARK 500 3 TYR A 523 CE1 TYR A 523 CZ 0.127 REMARK 500 3 TYR A 523 CZ TYR A 523 CE2 -0.128 REMARK 500 4 TYR A 523 CE1 TYR A 523 CZ 0.125 REMARK 500 4 TYR A 523 CZ TYR A 523 CE2 -0.123 REMARK 500 5 TYR A 523 CE1 TYR A 523 CZ 0.125 REMARK 500 5 TYR A 523 CZ TYR A 523 CE2 -0.122 REMARK 500 7 TYR A 523 CE1 TYR A 523 CZ 0.105 REMARK 500 7 TYR A 523 CZ TYR A 523 CE2 -0.102 REMARK 500 8 TYR A 523 CE1 TYR A 523 CZ 0.088 REMARK 500 8 TYR A 523 CZ TYR A 523 CE2 -0.077 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 523 OH - CZ - CE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 2 TYR A 523 CE1 - CZ - OH ANGL. DEV. = -7.9 DEGREES REMARK 500 3 TYR A 523 OH - CZ - CE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 3 TYR A 523 CE1 - CZ - OH ANGL. DEV. = -9.3 DEGREES REMARK 500 4 TYR A 523 OH - CZ - CE2 ANGL. DEV. = 8.9 DEGREES REMARK 500 4 TYR A 523 CE1 - CZ - OH ANGL. DEV. = -9.2 DEGREES REMARK 500 5 TYR A 523 OH - CZ - CE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 5 TYR A 523 CE1 - CZ - OH ANGL. DEV. = -9.7 DEGREES REMARK 500 7 TYR A 523 OH - CZ - CE2 ANGL. DEV. = 7.0 DEGREES REMARK 500 7 TYR A 523 CE1 - CZ - OH ANGL. DEV. = -7.9 DEGREES REMARK 500 8 TYR A 523 CE1 - CZ - OH ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 SER A 543 -42.58 71.32 DBREF 2FV6 A 496 544 UNP O75398 DEAF1_HUMAN 496 544 SEQADV 2FV6 GLY A 493 UNP O75398 CLONING ARTIFACT SEQADV 2FV6 ALA A 494 UNP O75398 CLONING ARTIFACT SEQADV 2FV6 MET A 495 UNP O75398 CLONING ARTIFACT SEQRES 1 A 52 GLY ALA MET ASP ALA GLU ARG LYS GLU GLN SER CYS VAL SEQRES 2 A 52 ASN CYS GLY ARG GLU ALA MET SER GLU CYS THR GLY CYS SEQRES 3 A 52 HIS LYS VAL ASN TYR CYS SER THR PHE CYS GLN ARG LYS SEQRES 4 A 52 ASP TRP LYS ASP HIS GLN HIS ILE CYS GLY GLN SER ALA HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 SER A 525 ASP A 532 1 8 HELIX 2 2 ASP A 532 CYS A 540 1 9 LINK ZN ZN A 101 SG CYS A 504 LINK ZN ZN A 101 SG CYS A 507 LINK ZN ZN A 101 SG CYS A 515 LINK ZN ZN A 101 SG CYS A 518 LINK ZN ZN A 102 NE2 HIS A 536 LINK ZN ZN A 102 SG CYS A 540 LINK ZN ZN A 102 SG CYS A 524 LINK ZN ZN A 102 SG CYS A 528 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1