HEADER HYDROLASE 30-JAN-06 2FVH TITLE CRYSTAL STRUCTURE OF RV1848, A UREASE GAMMA SUBUNIT UREA (UREA TITLE 2 AMIDOHYDROLASE), FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREASE GAMMA SUBUNIT; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: UREA AMIDOHYDROLASE GAMMA SUBUNIT; COMPND 5 EC: 3.5.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H32RV; SOURCE 5 GENE: UREA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: CUSTOM KEYWDS PROTEIN: UREA HOMOLOG, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.H.BURSEY,M.YU,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC),T.LEKIN, AUTHOR 2 B.RUPP,C.Y.KIM,B.S.RHO,T.C.TERWILLIGER REVDAT 5 14-FEB-24 2FVH 1 SEQADV REVDAT 4 13-JUL-11 2FVH 1 VERSN REVDAT 3 24-FEB-09 2FVH 1 VERSN REVDAT 2 14-FEB-06 2FVH 1 AUTHOR REVDAT 1 07-FEB-06 2FVH 0 JRNL AUTH E.H.BURSEY,M.YU,B.W.SEGELKE,T.LEKIN,B.RUPP,C.Y.KIM,B.S.RHO, JRNL AUTH 2 T.C.TERWILLIGER,L.-W.HUNG JRNL TITL CRYSTAL STRUCTURE OF RV1848, A UREASE GAMMA SUBUNIT UREA JRNL TITL 2 (UREA AMIDOHYDROLASE), FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 24482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2299 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3112 ; 1.602 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.125 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;32.381 ;22.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;13.697 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1738 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1196 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1590 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1514 ; 1.192 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2357 ; 1.778 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 840 ; 3.251 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 755 ; 5.157 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2740 25.3300 22.9220 REMARK 3 T TENSOR REMARK 3 T11: -0.0734 T22: -0.0668 REMARK 3 T33: -0.0572 T12: -0.0095 REMARK 3 T13: -0.0066 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.1934 L22: 1.4187 REMARK 3 L33: 1.1359 L12: 0.0630 REMARK 3 L13: 0.2675 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0964 S13: 0.0334 REMARK 3 S21: 0.0029 S22: 0.0358 S23: 0.0433 REMARK 3 S31: -0.1451 S32: 0.0867 S33: -0.0221 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1080 38.5250 25.5850 REMARK 3 T TENSOR REMARK 3 T11: -0.0550 T22: -0.0850 REMARK 3 T33: -0.0118 T12: -0.0582 REMARK 3 T13: 0.0119 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.9331 L22: 1.8711 REMARK 3 L33: 3.0820 L12: 1.0529 REMARK 3 L13: 0.0306 L23: -0.3810 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.0155 S13: -0.1691 REMARK 3 S21: -0.0313 S22: 0.0725 S23: -0.3252 REMARK 3 S31: -0.2636 S32: 0.2752 S33: 0.0173 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 100 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0210 20.6050 45.0670 REMARK 3 T TENSOR REMARK 3 T11: -0.0785 T22: -0.0812 REMARK 3 T33: -0.0541 T12: 0.0174 REMARK 3 T13: -0.0165 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.9980 L22: 3.1870 REMARK 3 L33: 2.7542 L12: 0.2746 REMARK 3 L13: -0.3061 L23: -1.4367 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: -0.1664 S13: 0.1132 REMARK 3 S21: 0.1379 S22: -0.0881 S23: -0.1722 REMARK 3 S31: -0.0278 S32: 0.1199 S33: 0.0430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1% 2-BUTANOL, 23.76% POLY ETHYLENE REMARK 280 GLYCOL 750MME, 0.16% GLYCEROL, 0.1M SODIUM CACODYLATE PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS LIKELY TO BE A TRIMER AS IN THE REMARK 300 CRYSTAL ASSYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ALA C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA A 100 CB REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 7 CD OE1 OE2 REMARK 480 GLU B 9 CG CD OE1 OE2 REMARK 480 ARG C 2 CG CD NE CZ NH1 NH2 REMARK 480 GLU C 7 CD OE1 OE2 REMARK 480 GLU C 9 CD OE1 OE2 REMARK 480 ASP C 67 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 18 OE2 GLU B 18 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 67 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 97 63.68 39.43 REMARK 500 ILE A 99 -61.79 -121.68 REMARK 500 ASP B 88 39.64 -88.41 REMARK 500 GLN C 97 59.82 36.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1848 RELATED DB: TARGETDB DBREF 2FVH A 1 100 UNP P0A676 URE3_MYCTU 1 100 DBREF 2FVH B 1 100 UNP P0A676 URE3_MYCTU 1 100 DBREF 2FVH C 1 100 UNP P0A676 URE3_MYCTU 1 100 SEQADV 2FVH MET A -19 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY A -18 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER A -17 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER A -16 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH HIS A -15 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS A -14 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS A -13 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS A -12 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS A -11 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS A -10 UNP P0A676 EXPRESSION TAG SEQADV 2FVH SER A -9 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER A -8 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY A -7 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH LEU A -6 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH VAL A -5 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH PRO A -4 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH ALA A -3 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY A -2 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER A -1 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH HIS A 0 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH MET B -19 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY B -18 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER B -17 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER B -16 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH HIS B -15 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS B -14 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS B -13 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS B -12 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS B -11 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS B -10 UNP P0A676 EXPRESSION TAG SEQADV 2FVH SER B -9 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER B -8 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY B -7 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH LEU B -6 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH VAL B -5 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH PRO B -4 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH ALA B -3 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY B -2 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER B -1 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH HIS B 0 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH MET C -19 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY C -18 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER C -17 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER C -16 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH HIS C -15 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS C -14 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS C -13 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS C -12 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS C -11 UNP P0A676 EXPRESSION TAG SEQADV 2FVH HIS C -10 UNP P0A676 EXPRESSION TAG SEQADV 2FVH SER C -9 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER C -8 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY C -7 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH LEU C -6 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH VAL C -5 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH PRO C -4 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH ALA C -3 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH GLY C -2 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH SER C -1 UNP P0A676 CLONING ARTIFACT SEQADV 2FVH HIS C 0 UNP P0A676 CLONING ARTIFACT SEQRES 1 A 120 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 120 LEU VAL PRO ALA GLY SER HIS MET ARG LEU THR PRO HIS SEQRES 3 A 120 GLU GLN GLU ARG LEU LEU LEU SER TYR ALA ALA GLU LEU SEQRES 4 A 120 ALA ARG ARG ARG ARG ALA ARG GLY LEU ARG LEU ASN HIS SEQRES 5 A 120 PRO GLU ALA ILE ALA VAL ILE ALA ASP HIS ILE LEU GLU SEQRES 6 A 120 GLY ALA ARG ASP GLY ARG THR VAL ALA GLU LEU MET ALA SEQRES 7 A 120 SER GLY ARG GLU VAL LEU GLY ARG ASP ASP VAL MET GLU SEQRES 8 A 120 GLY VAL PRO GLU MET LEU ALA GLU VAL GLN VAL GLU ALA SEQRES 9 A 120 THR PHE PRO ASP GLY THR LYS LEU VAL THR VAL HIS GLN SEQRES 10 A 120 PRO ILE ALA SEQRES 1 B 120 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 120 LEU VAL PRO ALA GLY SER HIS MET ARG LEU THR PRO HIS SEQRES 3 B 120 GLU GLN GLU ARG LEU LEU LEU SER TYR ALA ALA GLU LEU SEQRES 4 B 120 ALA ARG ARG ARG ARG ALA ARG GLY LEU ARG LEU ASN HIS SEQRES 5 B 120 PRO GLU ALA ILE ALA VAL ILE ALA ASP HIS ILE LEU GLU SEQRES 6 B 120 GLY ALA ARG ASP GLY ARG THR VAL ALA GLU LEU MET ALA SEQRES 7 B 120 SER GLY ARG GLU VAL LEU GLY ARG ASP ASP VAL MET GLU SEQRES 8 B 120 GLY VAL PRO GLU MET LEU ALA GLU VAL GLN VAL GLU ALA SEQRES 9 B 120 THR PHE PRO ASP GLY THR LYS LEU VAL THR VAL HIS GLN SEQRES 10 B 120 PRO ILE ALA SEQRES 1 C 120 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 120 LEU VAL PRO ALA GLY SER HIS MET ARG LEU THR PRO HIS SEQRES 3 C 120 GLU GLN GLU ARG LEU LEU LEU SER TYR ALA ALA GLU LEU SEQRES 4 C 120 ALA ARG ARG ARG ARG ALA ARG GLY LEU ARG LEU ASN HIS SEQRES 5 C 120 PRO GLU ALA ILE ALA VAL ILE ALA ASP HIS ILE LEU GLU SEQRES 6 C 120 GLY ALA ARG ASP GLY ARG THR VAL ALA GLU LEU MET ALA SEQRES 7 C 120 SER GLY ARG GLU VAL LEU GLY ARG ASP ASP VAL MET GLU SEQRES 8 C 120 GLY VAL PRO GLU MET LEU ALA GLU VAL GLN VAL GLU ALA SEQRES 9 C 120 THR PHE PRO ASP GLY THR LYS LEU VAL THR VAL HIS GLN SEQRES 10 C 120 PRO ILE ALA FORMUL 4 HOH *164(H2 O) HELIX 1 1 THR A 4 ARG A 26 1 23 HELIX 2 2 ASN A 31 GLY A 50 1 20 HELIX 3 3 THR A 52 GLY A 60 1 9 HELIX 4 4 GLY A 65 VAL A 69 5 5 HELIX 5 5 GLY A 72 LEU A 77 1 6 HELIX 6 6 THR B 4 ARG B 26 1 23 HELIX 7 7 ASN B 31 GLY B 50 1 20 HELIX 8 8 THR B 52 GLY B 60 1 9 HELIX 9 9 GLY B 65 VAL B 69 5 5 HELIX 10 10 GLY B 72 LEU B 77 1 6 HELIX 11 11 THR C 4 ARG C 26 1 23 HELIX 12 12 ASN C 31 GLY C 50 1 20 HELIX 13 13 THR C 52 GLY C 60 1 9 HELIX 14 14 GLY C 65 VAL C 69 5 5 HELIX 15 15 GLY C 72 LEU C 77 1 6 SHEET 1 A 2 GLU A 79 PHE A 86 0 SHEET 2 A 2 GLY A 89 HIS A 96 -1 O VAL A 95 N VAL A 80 SHEET 1 B 2 GLU B 79 PHE B 86 0 SHEET 2 B 2 GLY B 89 HIS B 96 -1 O VAL B 93 N VAL B 82 SHEET 1 C 2 GLU C 79 PHE C 86 0 SHEET 2 C 2 GLY C 89 HIS C 96 -1 O VAL C 93 N VAL C 82 CRYST1 109.988 109.988 40.873 90.00 90.00 120.00 P 6 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009092 0.005249 0.000000 0.00000 SCALE2 0.000000 0.010498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024466 0.00000