HEADER CELL ADHESION 31-JAN-06 2FVN TITLE THE FIBRILLAR TIP COMPLEX OF THE AFA/DR ADHESINS FROM PATHOGEN E. COLI TITLE 2 DISPLAYS SYNERGISTIC BINDING TO 5 1 AND V 3 INTEGRINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN AFAD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AFAD, AFAE, FIBRILLAR, AFIMBRIAL, INTEGRIN-BINDING, DAEC, DAF, KEYWDS 2 CEACAM, CELL ADHESION EXPDTA SOLUTION NMR AUTHOR E.COTA,P.SIMPSON,K.L.ANDERSON,S.J.MATTHEWS REVDAT 4 23-OCT-24 2FVN 1 REMARK REVDAT 3 09-MAR-22 2FVN 1 REMARK SEQADV REVDAT 2 24-FEB-09 2FVN 1 VERSN REVDAT 1 27-FEB-07 2FVN 0 JRNL AUTH E.COTA,C.JONES,P.SIMPSON,H.ALTROFF,K.L.ANDERSON,L.DU MERLE, JRNL AUTH 2 J.GUIGNOT,A.SERVIN,C.LE BOUGUENEC,H.MARDON,S.MATTHEWS JRNL TITL THE SOLUTION STRUCTURE OF THE INVASIVE TIP COMPLEX FROM JRNL TITL 2 AFA/DR FIBRILS JRNL REF MOL.MICROBIOL. V. 62 356 2006 JRNL REFN ISSN 0950-382X JRNL PMID 16965519 JRNL DOI 10.1111/J.1365-2958.2006.05375.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE, NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE BASED ON 3839 NOE-BASED REMARK 3 RESTRAINTS (2951 UNAMBIGUOUS, 1423 AMBIGUOUS) AND 116 TORSION REMARK 3 ANGLES (TALOS) REMARK 4 REMARK 4 2FVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036366. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM AFAD-DSC, U-15N, 13C; 50MM REMARK 210 NA PHOSPHATE BUFFER(PH 7.0); REMARK 210 50MM NACL; 90% H2O, 10% D2O; REMARK 210 0.5MM AFADE-DSC, U-15N, 13C, D2O; REMARK 210 50MM NA PHOSPHATE BUFFER(PH 7.0) REMARK 210 ; 50MM NACL; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRVIEW 4.0, NMRPIPE REMARK 210 2.1, XWINNMR 3.1 REMARK 210 METHOD USED : ARIA-IMPLEMENTED DISTANCE REMARK 210 GEOMETRY, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : REGULARIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 36 HA SER A 84 1.59 REMARK 500 O GLY A 19 O ALA A 98 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 86.74 -157.18 REMARK 500 THR A 14 30.52 -97.43 REMARK 500 GLN A 15 95.39 58.91 REMARK 500 ASP A 18 -32.21 -28.46 REMARK 500 ALA A 20 110.65 -6.47 REMARK 500 LYS A 21 -156.77 -63.22 REMARK 500 VAL A 22 -65.07 -166.98 REMARK 500 CYS A 29 -162.39 -125.93 REMARK 500 ARG A 30 38.82 166.08 REMARK 500 ARG A 43 -152.08 41.94 REMARK 500 ASP A 46 -66.11 70.10 REMARK 500 ARG A 48 -96.20 -113.87 REMARK 500 ALA A 49 -18.23 146.12 REMARK 500 GLU A 50 -155.59 -92.88 REMARK 500 ARG A 51 115.07 -30.62 REMARK 500 SER A 56 -159.50 -87.45 REMARK 500 ARG A 60 8.46 -163.92 REMARK 500 THR A 67 -70.94 -175.50 REMARK 500 TRP A 72 -170.73 -51.38 REMARK 500 LYS A 76 91.37 -67.49 REMARK 500 PRO A 86 134.60 -38.89 REMARK 500 GLN A 88 -21.61 -33.31 REMARK 500 GLN A 91 138.75 -172.89 REMARK 500 ASN A 101 72.20 84.69 REMARK 500 GLN A 102 -88.00 136.56 REMARK 500 ASP A 103 135.20 -172.46 REMARK 500 ALA A 105 133.54 -25.19 REMARK 500 CYS A 117 -33.52 90.58 REMARK 500 GLU A 122 87.13 -62.99 REMARK 500 SER A 131 -44.72 -145.43 REMARK 500 THR A 133 172.85 -52.71 REMARK 500 THR A 137 95.36 177.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RXL RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE AFAE ADHESIN DBREF 2FVN A 2 122 UNP Q47038 AFAD_ECOLI 27 147 SEQADV 2FVN MET A -10 UNP Q47038 INITIATING METHIONINE SEQADV 2FVN ARG A -9 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN GLY A -8 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN SER A -7 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN HIS A -6 UNP Q47038 EXPRESSION TAG SEQADV 2FVN HIS A -5 UNP Q47038 EXPRESSION TAG SEQADV 2FVN HIS A -4 UNP Q47038 EXPRESSION TAG SEQADV 2FVN HIS A -3 UNP Q47038 EXPRESSION TAG SEQADV 2FVN HIS A -2 UNP Q47038 EXPRESSION TAG SEQADV 2FVN HIS A -1 UNP Q47038 EXPRESSION TAG SEQADV 2FVN GLY A 0 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN SER A 1 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN ASP A 123 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN ASN A 124 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN LYS A 125 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN GLN A 126 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN GLY A 127 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN PHE A 128 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN THR A 129 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN PRO A 130 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN SER A 131 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN GLY A 132 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN THR A 133 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN THR A 134 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN GLY A 135 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN THR A 136 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN THR A 137 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN LYS A 138 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN LEU A 139 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN THR A 140 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN VAL A 141 UNP Q47038 CLONING ARTIFACT SEQADV 2FVN THR A 142 UNP Q47038 CLONING ARTIFACT SEQRES 1 A 153 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 153 GLU LEU HIS LEU GLU SER ARG GLY GLY SER GLY THR GLN SEQRES 3 A 153 LEU ARG ASP GLY ALA LYS VAL ALA THR GLY ARG ILE ILE SEQRES 4 A 153 CYS ARG GLU ALA HIS THR GLY PHE HIS VAL TRP MET ASN SEQRES 5 A 153 GLU ARG GLN VAL ASP GLY ARG ALA GLU ARG TYR VAL VAL SEQRES 6 A 153 GLN SER LYS ASP GLY ARG HIS GLU LEU ARG VAL ARG THR SEQRES 7 A 153 GLY GLY ASP GLY TRP SER PRO VAL LYS GLY GLU GLY GLY SEQRES 8 A 153 LYS GLY VAL SER ARG PRO GLY GLN GLU GLU GLN VAL PHE SEQRES 9 A 153 PHE ASP VAL MET ALA ASP GLY ASN GLN ASP ILE ALA PRO SEQRES 10 A 153 GLY GLU TYR ARG PHE SER VAL GLY GLY ALA CYS VAL VAL SEQRES 11 A 153 PRO GLN GLU ASP ASN LYS GLN GLY PHE THR PRO SER GLY SEQRES 12 A 153 THR THR GLY THR THR LYS LEU THR VAL THR SHEET 1 A 2 LYS A 21 THR A 24 0 SHEET 2 A 2 ASP A 95 MET A 97 -1 O VAL A 96 N ALA A 23 SHEET 1 B 2 ILE A 27 ILE A 28 0 SHEET 2 B 2 GLN A 91 VAL A 92 -1 O VAL A 92 N ILE A 27 SHEET 1 C 3 PHE A 36 VAL A 38 0 SHEET 2 C 3 VAL A 83 ARG A 85 -1 O ARG A 85 N PHE A 36 SHEET 3 C 3 SER A 73 PRO A 74 -1 N SER A 73 O SER A 84 SHEET 1 D 2 VAL A 54 GLN A 55 0 SHEET 2 D 2 GLU A 62 LEU A 63 -1 O LEU A 63 N VAL A 54 SHEET 1 E 2 GLY A 107 ARG A 110 0 SHEET 2 E 2 LYS A 138 VAL A 141 -1 O VAL A 141 N GLY A 107 SSBOND 1 CYS A 29 CYS A 117 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000