data_2FX0 # _entry.id 2FX0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2FX0 RCSB RCSB036413 WWPDB D_1000036413 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FX0 _pdbx_database_status.recvd_initial_deposition_date 2006-02-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kovalevskiy, O.V.' 1 'Lebedev, A.A.' 2 'Solonin, A.S.' 3 'Antson, A.A.' 4 # _citation.id primary _citation.title 'Crystal Structure of Bacillus cereus HlyIIR, a Transcriptional Regulator of the Gene for Pore-forming Toxin Hemolysin II.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 365 _citation.page_first 825 _citation.page_last 834 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17097673 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.10.074 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kovalevskiy, O.V.' 1 primary 'Lebedev, A.A.' 2 primary 'Surin, A.K.' 3 primary 'Solonin, A.S.' 4 primary 'Antson, A.A.' 5 # _cell.entry_id 2FX0 _cell.length_a 124.208 _cell.length_b 124.208 _cell.length_c 79.667 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FX0 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hemolysin II regulatory protein' 23575.230 1 ? ? ? ? 2 water nat water 18.015 114 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GKSREQT(MSE)ENILKAAKKKFGERGYEGTSIQEIAKEAKVNVA(MSE)ASYYFNGKENLYYEVFKKYGLANEL PNFLEKNQFNPINALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVFHFFSIN HTIHWITSIVLFPKFKKFIDSLGTNETNDTNHEW(MSE)PEDLVSRIISALTDKPNI ; _entity_poly.pdbx_seq_one_letter_code_can ;MGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPNFLEKNQFNPI NALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSIVLF PKFKKFIDSLGTNETNDTNHEWMPEDLVSRIISALTDKPNI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 LYS n 1 4 SER n 1 5 ARG n 1 6 GLU n 1 7 GLN n 1 8 THR n 1 9 MSE n 1 10 GLU n 1 11 ASN n 1 12 ILE n 1 13 LEU n 1 14 LYS n 1 15 ALA n 1 16 ALA n 1 17 LYS n 1 18 LYS n 1 19 LYS n 1 20 PHE n 1 21 GLY n 1 22 GLU n 1 23 ARG n 1 24 GLY n 1 25 TYR n 1 26 GLU n 1 27 GLY n 1 28 THR n 1 29 SER n 1 30 ILE n 1 31 GLN n 1 32 GLU n 1 33 ILE n 1 34 ALA n 1 35 LYS n 1 36 GLU n 1 37 ALA n 1 38 LYS n 1 39 VAL n 1 40 ASN n 1 41 VAL n 1 42 ALA n 1 43 MSE n 1 44 ALA n 1 45 SER n 1 46 TYR n 1 47 TYR n 1 48 PHE n 1 49 ASN n 1 50 GLY n 1 51 LYS n 1 52 GLU n 1 53 ASN n 1 54 LEU n 1 55 TYR n 1 56 TYR n 1 57 GLU n 1 58 VAL n 1 59 PHE n 1 60 LYS n 1 61 LYS n 1 62 TYR n 1 63 GLY n 1 64 LEU n 1 65 ALA n 1 66 ASN n 1 67 GLU n 1 68 LEU n 1 69 PRO n 1 70 ASN n 1 71 PHE n 1 72 LEU n 1 73 GLU n 1 74 LYS n 1 75 ASN n 1 76 GLN n 1 77 PHE n 1 78 ASN n 1 79 PRO n 1 80 ILE n 1 81 ASN n 1 82 ALA n 1 83 LEU n 1 84 ARG n 1 85 GLU n 1 86 TYR n 1 87 LEU n 1 88 THR n 1 89 VAL n 1 90 PHE n 1 91 THR n 1 92 THR n 1 93 HIS n 1 94 ILE n 1 95 LYS n 1 96 GLU n 1 97 ASN n 1 98 PRO n 1 99 GLU n 1 100 ILE n 1 101 GLY n 1 102 THR n 1 103 LEU n 1 104 ALA n 1 105 TYR n 1 106 GLU n 1 107 GLU n 1 108 ILE n 1 109 ILE n 1 110 LYS n 1 111 GLU n 1 112 SER n 1 113 ALA n 1 114 ARG n 1 115 LEU n 1 116 GLU n 1 117 LYS n 1 118 ILE n 1 119 LYS n 1 120 PRO n 1 121 TYR n 1 122 PHE n 1 123 ILE n 1 124 GLY n 1 125 SER n 1 126 PHE n 1 127 GLU n 1 128 GLN n 1 129 LEU n 1 130 LYS n 1 131 GLU n 1 132 ILE n 1 133 LEU n 1 134 GLN n 1 135 GLU n 1 136 GLY n 1 137 GLU n 1 138 LYS n 1 139 GLN n 1 140 GLY n 1 141 VAL n 1 142 PHE n 1 143 HIS n 1 144 PHE n 1 145 PHE n 1 146 SER n 1 147 ILE n 1 148 ASN n 1 149 HIS n 1 150 THR n 1 151 ILE n 1 152 HIS n 1 153 TRP n 1 154 ILE n 1 155 THR n 1 156 SER n 1 157 ILE n 1 158 VAL n 1 159 LEU n 1 160 PHE n 1 161 PRO n 1 162 LYS n 1 163 PHE n 1 164 LYS n 1 165 LYS n 1 166 PHE n 1 167 ILE n 1 168 ASP n 1 169 SER n 1 170 LEU n 1 171 GLY n 1 172 THR n 1 173 ASN n 1 174 GLU n 1 175 THR n 1 176 ASN n 1 177 ASP n 1 178 THR n 1 179 ASN n 1 180 HIS n 1 181 GLU n 1 182 TRP n 1 183 MSE n 1 184 PRO n 1 185 GLU n 1 186 ASP n 1 187 LEU n 1 188 VAL n 1 189 SER n 1 190 ARG n 1 191 ILE n 1 192 ILE n 1 193 SER n 1 194 ALA n 1 195 LEU n 1 196 THR n 1 197 ASP n 1 198 LYS n 1 199 PRO n 1 200 ASN n 1 201 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene hlyIIR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain B771 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1396 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain M15 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAO74585 _struct_ref.pdbx_db_accession 31322346 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPNFLEKNQFNPI NALREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVFHFFSINHTIHWITSIVLF PKFKKFIDSLGTNETNDTNHEWMPEDLVSRIISALTDKPNI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FX0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 201 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 31322346 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 201 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 201 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FX0 MSE A 1 ? GB 31322346 MET 1 'MODIFIED RESIDUE' 1 1 1 2FX0 MSE A 9 ? GB 31322346 MET 9 'MODIFIED RESIDUE' 9 2 1 2FX0 MSE A 43 ? GB 31322346 MET 43 'MODIFIED RESIDUE' 43 3 1 2FX0 MSE A 183 ? GB 31322346 MET 183 'MODIFIED RESIDUE' 183 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2FX0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.76 _exptl_crystal.density_percent_sol 67.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '40% saturation ammonium sulfate, 0.1M sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-09-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL CUT' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9794 1.0 3 0.9184 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792,0.9794,0.9184 # _reflns.entry_id 2FX0 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 25 _reflns.d_resolution_high 2.4 _reflns.number_obs 14561 _reflns.number_all 14561 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.9 _reflns.B_iso_Wilson_estimate 45.3 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.34 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.0 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1431 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2FX0 _refine.ls_number_reflns_obs 13895 _refine.ls_number_reflns_all 14590 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.68 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.22335 _refine.ls_R_factor_all 0.22335 _refine.ls_R_factor_R_work 0.22085 _refine.ls_R_factor_R_free 0.27648 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 695 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.905 _refine.B_iso_mean 51.916 _refine.aniso_B[1][1] 1.39 _refine.aniso_B[2][2] 1.39 _refine.aniso_B[3][3] -2.09 _refine.aniso_B[1][2] 0.70 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.247 _refine.pdbx_overall_ESU_R_Free 0.228 _refine.overall_SU_ML 0.189 _refine.overall_SU_B 15.633 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1476 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 1590 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 24.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1508 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.172 1.956 ? 2025 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.954 5.000 ? 177 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.879 24.865 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.644 15.000 ? 287 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.018 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 218 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1121 'X-RAY DIFFRACTION' ? r_nbd_refined 0.207 0.200 ? 746 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 1059 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.171 0.200 ? 84 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.389 0.200 ? 55 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.224 0.200 ? 11 'X-RAY DIFFRACTION' ? r_mcbond_it 1.274 3.000 ? 930 'X-RAY DIFFRACTION' ? r_mcangle_it 1.895 4.000 ? 1437 'X-RAY DIFFRACTION' ? r_scbond_it 4.569 8.000 ? 667 'X-RAY DIFFRACTION' ? r_scangle_it 6.787 12.000 ? 588 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 995 _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.375 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2FX0 _struct.title 'Crystal Structure of HlyIIR, a Hemolysin II transcriptional Regulator' _struct.pdbx_descriptor 'hemolysin II regulatory protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FX0 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Transcriptional regulator, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;The second subunit of biological dimer is generated by the operations: ROTATION MATRIX: 0.50000 -0.86603 0.00000 -0.86603 -0.50000 0.00000 0.00000 0.00000 -1.00000 TRANSLATION VECTOR IN AS 0.00001 0.00000 66.38908 or 1-y, 1-x, 11/6-z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? GLY A 24 ? SER A 4 GLY A 24 1 ? 21 HELX_P HELX_P2 2 SER A 29 ? LYS A 38 ? SER A 29 LYS A 38 1 ? 10 HELX_P HELX_P3 3 ASN A 40 ? ASN A 49 ? ASN A 40 ASN A 49 1 ? 10 HELX_P HELX_P4 4 GLY A 50 ? GLY A 63 ? GLY A 50 GLY A 63 1 ? 14 HELX_P HELX_P5 5 LEU A 64 ? LEU A 68 ? LEU A 64 LEU A 68 5 ? 5 HELX_P HELX_P6 6 ASN A 70 ? ASN A 75 ? ASN A 70 ASN A 75 1 ? 6 HELX_P HELX_P7 7 ASN A 78 ? ASN A 97 ? ASN A 78 ASN A 97 1 ? 20 HELX_P HELX_P8 8 ILE A 100 ? ILE A 108 ? ILE A 100 ILE A 108 1 ? 9 HELX_P HELX_P9 9 ARG A 114 ? LYS A 119 ? ARG A 114 LYS A 119 1 ? 6 HELX_P HELX_P10 10 PHE A 122 ? GLN A 139 ? PHE A 122 GLN A 139 1 ? 18 HELX_P HELX_P11 11 SER A 146 ? PHE A 160 ? SER A 146 PHE A 160 1 ? 15 HELX_P HELX_P12 12 PHE A 160 ? SER A 169 ? PHE A 160 SER A 169 1 ? 10 HELX_P HELX_P13 13 ASP A 186 ? ASP A 197 ? ASP A 186 ASP A 197 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 8 C ? ? ? 1_555 A MSE 9 N ? ? A THR 8 A MSE 9 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 9 C ? ? ? 1_555 A GLU 10 N ? ? A MSE 9 A GLU 10 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale ? ? A ALA 42 C ? ? ? 1_555 A MSE 43 N ? ? A ALA 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 43 C ? ? ? 1_555 A ALA 44 N ? ? A MSE 43 A ALA 44 1_555 ? ? ? ? ? ? ? 1.337 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2FX0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FX0 _atom_sites.fract_transf_matrix[1][1] 0.008051 _atom_sites.fract_transf_matrix[1][2] 0.004648 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009297 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012552 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 MSE 9 9 9 MSE MSE A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 MSE 43 43 43 MSE MSE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 TRP 153 153 153 TRP TRP A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 VAL 158 158 158 VAL VAL A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 LEU 170 170 ? ? ? A . n A 1 171 GLY 171 171 ? ? ? A . n A 1 172 THR 172 172 ? ? ? A . n A 1 173 ASN 173 173 ? ? ? A . n A 1 174 GLU 174 174 ? ? ? A . n A 1 175 THR 175 175 ? ? ? A . n A 1 176 ASN 176 176 ? ? ? A . n A 1 177 ASP 177 177 ? ? ? A . n A 1 178 THR 178 178 ? ? ? A . n A 1 179 ASN 179 179 ? ? ? A . n A 1 180 HIS 180 180 ? ? ? A . n A 1 181 GLU 181 181 ? ? ? A . n A 1 182 TRP 182 182 ? ? ? A . n A 1 183 MSE 183 183 ? ? ? A . n A 1 184 PRO 184 184 ? ? ? A . n A 1 185 GLU 185 185 ? ? ? A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 ILE 192 192 192 ILE ILE A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 LYS 198 198 198 LYS LYS A . n A 1 199 PRO 199 199 ? ? ? A . n A 1 200 ASN 200 200 ? ? ? A . n A 1 201 ILE 201 201 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 202 1 HOH HOH A . B 2 HOH 2 203 2 HOH HOH A . B 2 HOH 3 204 3 HOH HOH A . B 2 HOH 4 205 4 HOH HOH A . B 2 HOH 5 206 5 HOH HOH A . B 2 HOH 6 207 6 HOH HOH A . B 2 HOH 7 208 7 HOH HOH A . B 2 HOH 8 209 8 HOH HOH A . B 2 HOH 9 210 9 HOH HOH A . B 2 HOH 10 211 10 HOH HOH A . B 2 HOH 11 212 11 HOH HOH A . B 2 HOH 12 213 12 HOH HOH A . B 2 HOH 13 214 13 HOH HOH A . B 2 HOH 14 215 14 HOH HOH A . B 2 HOH 15 216 15 HOH HOH A . B 2 HOH 16 217 16 HOH HOH A . B 2 HOH 17 218 17 HOH HOH A . B 2 HOH 18 219 18 HOH HOH A . B 2 HOH 19 220 19 HOH HOH A . B 2 HOH 20 221 20 HOH HOH A . B 2 HOH 21 222 21 HOH HOH A . B 2 HOH 22 223 22 HOH HOH A . B 2 HOH 23 224 23 HOH HOH A . B 2 HOH 24 225 24 HOH HOH A . B 2 HOH 25 226 25 HOH HOH A . B 2 HOH 26 227 26 HOH HOH A . B 2 HOH 27 228 27 HOH HOH A . B 2 HOH 28 229 28 HOH HOH A . B 2 HOH 29 230 29 HOH HOH A . B 2 HOH 30 231 30 HOH HOH A . B 2 HOH 31 232 31 HOH HOH A . B 2 HOH 32 233 32 HOH HOH A . B 2 HOH 33 234 33 HOH HOH A . B 2 HOH 34 235 34 HOH HOH A . B 2 HOH 35 236 35 HOH HOH A . B 2 HOH 36 237 36 HOH HOH A . B 2 HOH 37 238 37 HOH HOH A . B 2 HOH 38 239 38 HOH HOH A . B 2 HOH 39 240 39 HOH HOH A . B 2 HOH 40 241 40 HOH HOH A . B 2 HOH 41 242 41 HOH HOH A . B 2 HOH 42 243 42 HOH HOH A . B 2 HOH 43 244 43 HOH HOH A . B 2 HOH 44 245 44 HOH HOH A . B 2 HOH 45 246 45 HOH HOH A . B 2 HOH 46 247 46 HOH HOH A . B 2 HOH 47 248 47 HOH HOH A . B 2 HOH 48 249 48 HOH HOH A . B 2 HOH 49 250 49 HOH HOH A . B 2 HOH 50 251 50 HOH HOH A . B 2 HOH 51 252 51 HOH HOH A . B 2 HOH 52 253 52 HOH HOH A . B 2 HOH 53 254 53 HOH HOH A . B 2 HOH 54 255 54 HOH HOH A . B 2 HOH 55 256 55 HOH HOH A . B 2 HOH 56 257 56 HOH HOH A . B 2 HOH 57 258 57 HOH HOH A . B 2 HOH 58 259 58 HOH HOH A . B 2 HOH 59 260 59 HOH HOH A . B 2 HOH 60 261 60 HOH HOH A . B 2 HOH 61 262 61 HOH HOH A . B 2 HOH 62 263 62 HOH HOH A . B 2 HOH 63 264 63 HOH HOH A . B 2 HOH 64 265 64 HOH HOH A . B 2 HOH 65 266 65 HOH HOH A . B 2 HOH 66 267 66 HOH HOH A . B 2 HOH 67 268 67 HOH HOH A . B 2 HOH 68 269 68 HOH HOH A . B 2 HOH 69 270 69 HOH HOH A . B 2 HOH 70 271 70 HOH HOH A . B 2 HOH 71 272 71 HOH HOH A . B 2 HOH 72 273 72 HOH HOH A . B 2 HOH 73 274 73 HOH HOH A . B 2 HOH 74 275 74 HOH HOH A . B 2 HOH 75 276 75 HOH HOH A . B 2 HOH 76 277 76 HOH HOH A . B 2 HOH 77 278 77 HOH HOH A . B 2 HOH 78 279 78 HOH HOH A . B 2 HOH 79 280 79 HOH HOH A . B 2 HOH 80 281 80 HOH HOH A . B 2 HOH 81 282 81 HOH HOH A . B 2 HOH 82 283 82 HOH HOH A . B 2 HOH 83 284 83 HOH HOH A . B 2 HOH 84 285 84 HOH HOH A . B 2 HOH 85 286 85 HOH HOH A . B 2 HOH 86 287 86 HOH HOH A . B 2 HOH 87 288 87 HOH HOH A . B 2 HOH 88 289 88 HOH HOH A . B 2 HOH 89 290 89 HOH HOH A . B 2 HOH 90 291 90 HOH HOH A . B 2 HOH 91 292 91 HOH HOH A . B 2 HOH 92 293 92 HOH HOH A . B 2 HOH 93 294 93 HOH HOH A . B 2 HOH 94 295 94 HOH HOH A . B 2 HOH 95 296 95 HOH HOH A . B 2 HOH 96 297 96 HOH HOH A . B 2 HOH 97 298 97 HOH HOH A . B 2 HOH 98 299 98 HOH HOH A . B 2 HOH 99 300 99 HOH HOH A . B 2 HOH 100 301 100 HOH HOH A . B 2 HOH 101 302 101 HOH HOH A . B 2 HOH 102 303 102 HOH HOH A . B 2 HOH 103 304 103 HOH HOH A . B 2 HOH 104 305 104 HOH HOH A . B 2 HOH 105 306 105 HOH HOH A . B 2 HOH 106 307 106 HOH HOH A . B 2 HOH 107 308 107 HOH HOH A . B 2 HOH 108 309 108 HOH HOH A . B 2 HOH 109 310 109 HOH HOH A . B 2 HOH 110 311 110 HOH HOH A . B 2 HOH 111 312 111 HOH HOH A . B 2 HOH 112 313 112 HOH HOH A . B 2 HOH 113 314 113 HOH HOH A . B 2 HOH 114 315 114 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 9 A MSE 9 ? MET SELENOMETHIONINE 2 A MSE 43 A MSE 43 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3580 ? 1 MORE -22 ? 1 'SSA (A^2)' 17300 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+11/6 0.5000000000 -0.8660254038 0.0000000000 62.1040000000 -0.8660254038 -0.5000000000 0.0000000000 107.5672833533 0.0000000000 0.0000000000 -1.0000000000 146.0561666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 269 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-21 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' 5 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 24.4537 76.5284 63.9587 0.0287 -0.1394 -0.0828 0.1541 0.0119 -0.0175 3.7674 6.1794 6.9948 0.1464 0.4691 -2.1802 -0.1466 0.0147 0.1319 -0.1963 0.3671 -0.1999 0.5489 -0.5464 0.9860 'X-RAY DIFFRACTION' 2 ? refined 17.1136 71.1867 68.9095 0.0454 -0.0981 -0.1309 0.1920 0.1729 0.1210 5.7889 18.2870 7.6762 -5.0535 0.4686 -0.7230 -0.4506 0.3707 0.0799 -0.9415 -0.0639 0.6710 1.1891 0.1427 -0.1396 'X-RAY DIFFRACTION' 3 ? refined 22.1410 70.5675 59.0300 -0.0919 -0.0941 -0.0972 0.1587 0.0538 0.0474 5.1151 6.7550 6.2308 -2.6920 3.4289 0.0219 0.3567 -0.0861 -0.2706 0.4152 -0.1572 0.3891 -0.1867 0.1090 0.8644 'X-RAY DIFFRACTION' 4 ? refined 43.9436 66.7988 59.5596 -0.1255 0.5411 0.0154 0.3705 -0.0139 0.1120 50.1055 6.7758 4.6600 -2.0415 -2.9845 5.5987 0.4788 -0.5198 0.0410 -0.1957 1.1123 1.0350 -0.3941 -0.8585 -0.8314 'X-RAY DIFFRACTION' 5 ? refined 56.2806 61.2777 62.1310 -0.3032 0.1248 -0.1339 0.1061 -0.0256 -0.0144 14.9487 7.9947 8.8537 0.6586 -3.6206 -0.6598 -0.1977 0.4376 -0.2399 -0.4249 0.1117 -0.0092 0.0830 -1.0016 0.3899 'X-RAY DIFFRACTION' 6 ? refined 46.9129 63.6331 68.3292 -0.2549 0.5086 -0.0992 0.3659 -0.0201 0.0792 5.4853 8.3790 14.2240 -2.9911 -2.9264 10.8395 -0.5652 0.2022 0.3630 -0.2679 1.1631 0.5686 0.4741 -1.2022 -0.8934 'X-RAY DIFFRACTION' 7 ? refined 36.4838 66.8759 72.6266 -0.1291 0.6398 0.0075 0.4832 -0.0071 -0.1952 26.2023 24.0096 12.9339 22.7465 13.7971 7.0614 0.4781 -1.0236 0.5455 -2.3979 1.3372 0.7137 -0.0041 0.1410 0.3560 'X-RAY DIFFRACTION' 8 ? refined 31.5263 57.1865 61.4708 -0.1008 0.3901 -0.1190 0.3702 0.0029 0.1892 8.5237 4.4244 0.4540 -4.3009 -0.4740 1.2210 0.6997 -0.8358 0.1361 0.8447 -0.4050 0.1736 -0.4447 0.1599 0.5687 'X-RAY DIFFRACTION' 9 ? refined 53.7123 51.1345 62.0258 -0.3711 0.2199 -0.0182 0.0151 -0.0142 0.0817 9.1861 2.4177 8.3918 -2.7630 0.3171 -1.9822 -0.0814 0.2523 -0.1709 -0.3192 -0.5515 0.1202 -0.1340 0.1634 -0.7874 'X-RAY DIFFRACTION' 10 ? refined 41.5943 51.2860 74.1652 -0.2453 0.4797 0.1018 0.0652 -0.0037 0.2257 4.0089 1.4446 6.0402 -2.4065 -4.9208 2.9539 -0.5503 0.3933 0.1570 0.1562 -0.0733 -0.2282 0.5647 0.4511 -0.0893 'X-RAY DIFFRACTION' 11 ? refined 53.6161 53.5877 74.8327 -0.2824 0.3310 -0.2240 0.0625 -0.0062 0.0964 15.5502 14.2593 10.2844 -5.5539 -2.4146 2.7383 -0.3623 0.5960 -0.2337 -1.2222 -0.2539 -0.0839 0.9958 -0.0766 -0.2950 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 4 A 21 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 22 A 41 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 42 A 62 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 63 A 71 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 72 A 84 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 85 A 91 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 92 A 102 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 103 A 128 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 129 A 143 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 A 144 A 169 ? . . . . ? 'X-RAY DIFFRACTION' 11 11 A 186 A 198 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CB _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 105 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 CZ _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 TYR _pdbx_validate_symm_contact.auth_seq_id_2 105 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 10_666 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A GLU 99 ? ? CG A GLU 99 ? ? 1.639 1.517 0.122 0.019 N 2 1 CD A GLU 99 ? ? OE1 A GLU 99 ? ? 1.399 1.252 0.147 0.011 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 98 ? ? -75.97 33.80 2 1 GLU A 111 ? ? -104.61 -157.09 3 1 SER A 112 ? ? -151.38 -51.47 4 1 LYS A 119 ? ? -27.28 -57.66 5 1 PRO A 120 ? ? -50.07 -3.19 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 110 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 111 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -147.43 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A LEU 170 ? A LEU 170 5 1 Y 1 A GLY 171 ? A GLY 171 6 1 Y 1 A THR 172 ? A THR 172 7 1 Y 1 A ASN 173 ? A ASN 173 8 1 Y 1 A GLU 174 ? A GLU 174 9 1 Y 1 A THR 175 ? A THR 175 10 1 Y 1 A ASN 176 ? A ASN 176 11 1 Y 1 A ASP 177 ? A ASP 177 12 1 Y 1 A THR 178 ? A THR 178 13 1 Y 1 A ASN 179 ? A ASN 179 14 1 Y 1 A HIS 180 ? A HIS 180 15 1 Y 1 A GLU 181 ? A GLU 181 16 1 Y 1 A TRP 182 ? A TRP 182 17 1 Y 1 A MSE 183 ? A MSE 183 18 1 Y 1 A PRO 184 ? A PRO 184 19 1 Y 1 A GLU 185 ? A GLU 185 20 1 Y 1 A PRO 199 ? A PRO 199 21 1 Y 1 A ASN 200 ? A ASN 200 22 1 Y 1 A ILE 201 ? A ILE 201 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #