HEADER TRANSCRIPTION 07-FEB-06 2FY9 TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DNA RECOGNITION DOMAIN OF THE TITLE 2 BACILLUS SUBTILIS TRANSCRIPTION-STATE REGULATOR ABH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSITION STATE REGULATOR ABH; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: ABH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE)3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21-B KEYWDS N-TERMINAL DNA-BINDING DOMAIN, TRANSITION STATE REGULATOR, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.CAVANAGH,B.G.BOBAY REVDAT 4 09-MAR-22 2FY9 1 REMARK REVDAT 3 24-FEB-09 2FY9 1 VERSN REVDAT 2 08-AUG-06 2FY9 1 JRNL REVDAT 1 23-MAY-06 2FY9 0 JRNL AUTH B.G.BOBAY,G.A.MUELLER,R.J.THOMPSON,A.G.MURZIN,R.A.VENTERS, JRNL AUTH 2 M.A.STRAUCH,J.CAVANAGH JRNL TITL NMR STRUCTURE OF ABHN AND COMPARISON WITH ABRBN: FIRST JRNL TITL 2 INSIGHTS INTO THE DNA-BINDING PROMISCUITY AND SPECIFICITY OF JRNL TITL 3 ABRB-LIKE TRANSITION-STATE REGULATOR PROTEINS JRNL REF J.BIOL.CHEM. V. 281 21399 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16702211 JRNL DOI 10.1074/JBC.M601963200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE JULY 15TH 2004, ARIA 1.2 REMARK 3 AUTHORS : FRANK DELAGLIO (NMRPIPE), JENS LINGE, MICHAEL REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 2357 RESTRAINTS, 2191 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 96 DIHEDRAL ANGLE RESTRAINTS,70 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 2FY9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036453. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 10MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2MM ABHN, 15N,13C; 10MM KP04, REMARK 210 15MM KCL, 1MM DTT, 1MM EDTA, REMARK 210 0.02% NAN3; 95% H2O, 5% D2O; 1- REMARK 210 2MM ABHN, 15N,13C; 10MM KP04, REMARK 210 15MM KCL, 1MM DTT, 1MM EDTA, REMARK 210 0.02% NAN3; 5% H2O, 95% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3-D 13C/15N REMARK 210 SEQUENTIAL ASSIGNMENT PROTOCOLS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 PHE A 36 HG LEU A 45 1.30 REMARK 500 HD22 LEU B 26 H LYS B 47 1.30 REMARK 500 HD23 LEU A 26 H LYS A 47 1.31 REMARK 500 H LYS A 2 HA2 GLY A 5 1.32 REMARK 500 OD1 ASP A 32 HZ1 LYS A 47 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 11 -75.15 -60.85 REMARK 500 1 GLU A 12 -46.56 -151.25 REMARK 500 1 LEU A 26 -101.52 -85.19 REMARK 500 1 ASP A 27 50.93 -179.36 REMARK 500 1 ILE A 30 -32.36 -145.31 REMARK 500 1 LYS A 31 -50.41 -137.83 REMARK 500 1 ASP A 32 -118.84 35.91 REMARK 500 1 ASP B 11 -79.17 -53.86 REMARK 500 1 GLU B 12 -34.42 -154.70 REMARK 500 1 LEU B 26 -80.44 -92.93 REMARK 500 1 ASP B 27 16.49 177.40 REMARK 500 1 ILE B 30 -33.43 -166.05 REMARK 500 1 LYS B 31 -49.86 -136.58 REMARK 500 1 ASP B 32 -111.46 35.39 REMARK 500 2 LYS A 2 -170.44 55.00 REMARK 500 2 ASP A 11 -81.19 -60.88 REMARK 500 2 GLU A 12 -43.78 -154.30 REMARK 500 2 LEU A 26 -88.64 -93.67 REMARK 500 2 ASP A 27 23.85 177.27 REMARK 500 2 ILE A 30 -30.06 -151.15 REMARK 500 2 LYS A 31 -51.90 -137.03 REMARK 500 2 ASP A 32 -117.05 36.44 REMARK 500 2 HIS A 51 78.87 -166.54 REMARK 500 2 LYS B 2 -161.81 53.10 REMARK 500 2 ASP B 11 -82.84 -62.12 REMARK 500 2 GLU B 12 -41.78 -149.83 REMARK 500 2 LEU B 26 -93.90 -85.26 REMARK 500 2 ASP B 27 40.17 177.76 REMARK 500 2 ILE B 30 -30.61 -160.40 REMARK 500 2 LYS B 31 -52.45 -133.89 REMARK 500 2 ASP B 32 -117.83 39.45 REMARK 500 3 ASP A 11 -80.32 -61.32 REMARK 500 3 GLU A 12 -42.28 -153.82 REMARK 500 3 LEU A 26 -89.61 -89.45 REMARK 500 3 ASP A 27 58.78 168.52 REMARK 500 3 ILE A 30 -31.78 -142.62 REMARK 500 3 LYS A 31 -56.34 -134.63 REMARK 500 3 ASP A 32 -121.33 38.90 REMARK 500 3 HIS A 51 76.76 -117.00 REMARK 500 3 ASP B 11 -79.92 -57.19 REMARK 500 3 GLU B 12 -38.11 -152.92 REMARK 500 3 LEU B 26 -85.65 -90.83 REMARK 500 3 ASP B 27 55.45 169.05 REMARK 500 3 ILE B 30 -33.19 -140.85 REMARK 500 3 LYS B 31 -52.63 -133.98 REMARK 500 3 ASP B 32 -118.96 36.94 REMARK 500 4 LYS A 2 -162.28 -75.19 REMARK 500 4 ASP A 11 -77.87 -57.71 REMARK 500 4 GLU A 12 -45.87 -154.81 REMARK 500 4 LEU A 26 -89.87 -78.01 REMARK 500 REMARK 500 THIS ENTRY HAS 154 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z0R RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL DNA RECOGNITION DOMAIN OF THE REMARK 900 BACILLUS SUBTILIS TRANSCRIPTION-STATE REGULATOR ABRB REMARK 900 RELATED ID: 1YSF RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE N-DOMAIN OF THE TRANSCRIPTION FACTOR REMARK 900 ABRB DBREF 2FY9 A 1 54 UNP P39758 ABH_BACSU 1 54 DBREF 2FY9 B 1 54 UNP P39758 ABH_BACSU 1 54 SEQRES 1 A 54 MET LYS SER ILE GLY VAL VAL ARG LYS VAL ASP GLU LEU SEQRES 2 A 54 GLY ARG ILE VAL MET PRO ILE GLU LEU ARG ARG ALA LEU SEQRES 3 A 54 ASP ILE ALA ILE LYS ASP SER ILE GLU PHE PHE VAL ASP SEQRES 4 A 54 GLY ASP LYS ILE ILE LEU LYS LYS TYR LYS PRO HIS GLY SEQRES 5 A 54 VAL CYS SEQRES 1 B 54 MET LYS SER ILE GLY VAL VAL ARG LYS VAL ASP GLU LEU SEQRES 2 B 54 GLY ARG ILE VAL MET PRO ILE GLU LEU ARG ARG ALA LEU SEQRES 3 B 54 ASP ILE ALA ILE LYS ASP SER ILE GLU PHE PHE VAL ASP SEQRES 4 B 54 GLY ASP LYS ILE ILE LEU LYS LYS TYR LYS PRO HIS GLY SEQRES 5 B 54 VAL CYS HELIX 1 1 PRO A 19 LEU A 26 1 8 HELIX 2 2 PRO B 19 LEU B 26 1 8 SHEET 1 A 6 VAL A 7 ARG A 8 0 SHEET 2 A 6 ILE B 34 ASP B 39 -1 O ILE B 34 N ARG A 8 SHEET 3 A 6 LYS B 42 LYS B 46 -1 O LYS B 46 N GLU B 35 SHEET 4 A 6 LYS A 42 LYS A 46 -1 N ILE A 43 O LEU B 45 SHEET 5 A 6 ILE A 34 ASP A 39 -1 N GLU A 35 O LYS A 46 SHEET 6 A 6 VAL B 7 ARG B 8 -1 O ARG B 8 N ILE A 34 SHEET 1 B 2 ARG A 15 VAL A 17 0 SHEET 2 B 2 ARG B 15 VAL B 17 -1 O ILE B 16 N ILE A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1