data_2FYE # _entry.id 2FYE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FYE pdb_00002fye 10.2210/pdb2fye/pdb RCSB RCSB036458 ? ? WWPDB D_1000036458 ? ? # _pdbx_database_status.entry_id 2FYE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-02-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Somoza, J.R.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Mutant Human Cathepsin S with irreversible inhibitor CRA-14013' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Somoza, J.R.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 79.58 _cell.length_b 85.43 _cell.length_c 116.26 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.entry_id 2FYE _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.entry_id 2FYE _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 23 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'cathepsin S preproprotein' 24019.082 1 3.4.22.27 'S108R, E184K' ? ? 2 non-polymer syn ;N-[(1R)-1-[({[(5S)-3,5-DIMETHYL-2,5-DIHYDROISOXAZOL-4-YL]METHYL}SULFONYL)METHYL]-2-OXO-2-({(1S)-3-PHENYL-1-[2-(PHENYLSULFONYL)ETHYL]PROPYL}AMINO)ETHYL]MORPHOLINE-4-CARBOXAMIDE ; 662.817 1 ? ? ? ? 3 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIID NKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI ; _entity_poly.pdbx_seq_one_letter_code_can ;LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIID NKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYPEI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PRO n 1 3 ASP n 1 4 SER n 1 5 VAL n 1 6 ASP n 1 7 TRP n 1 8 ARG n 1 9 GLU n 1 10 LYS n 1 11 GLY n 1 12 CYS n 1 13 VAL n 1 14 THR n 1 15 GLU n 1 16 VAL n 1 17 LYS n 1 18 TYR n 1 19 GLN n 1 20 GLY n 1 21 SER n 1 22 CYS n 1 23 GLY n 1 24 ALA n 1 25 CYS n 1 26 TRP n 1 27 ALA n 1 28 PHE n 1 29 SER n 1 30 ALA n 1 31 VAL n 1 32 GLY n 1 33 ALA n 1 34 LEU n 1 35 GLU n 1 36 ALA n 1 37 GLN n 1 38 LEU n 1 39 LYS n 1 40 LEU n 1 41 LYS n 1 42 THR n 1 43 GLY n 1 44 LYS n 1 45 LEU n 1 46 VAL n 1 47 SER n 1 48 LEU n 1 49 SER n 1 50 ALA n 1 51 GLN n 1 52 ASN n 1 53 LEU n 1 54 VAL n 1 55 ASP n 1 56 CYS n 1 57 SER n 1 58 THR n 1 59 LYS n 1 60 LYS n 1 61 TYR n 1 62 GLY n 1 63 ASN n 1 64 LYS n 1 65 GLY n 1 66 CYS n 1 67 ASN n 1 68 GLY n 1 69 GLY n 1 70 PHE n 1 71 MET n 1 72 THR n 1 73 THR n 1 74 ALA n 1 75 PHE n 1 76 GLN n 1 77 TYR n 1 78 ILE n 1 79 ILE n 1 80 ASP n 1 81 ASN n 1 82 LYS n 1 83 GLY n 1 84 ILE n 1 85 ASP n 1 86 SER n 1 87 ASP n 1 88 ALA n 1 89 SER n 1 90 TYR n 1 91 PRO n 1 92 TYR n 1 93 LYS n 1 94 ALA n 1 95 MET n 1 96 ASP n 1 97 GLN n 1 98 LYS n 1 99 CYS n 1 100 GLN n 1 101 TYR n 1 102 ASP n 1 103 SER n 1 104 ALA n 1 105 TYR n 1 106 ARG n 1 107 ALA n 1 108 ALA n 1 109 THR n 1 110 CYS n 1 111 ARG n 1 112 LYS n 1 113 TYR n 1 114 THR n 1 115 GLU n 1 116 LEU n 1 117 PRO n 1 118 TYR n 1 119 GLY n 1 120 ARG n 1 121 GLU n 1 122 ASP n 1 123 VAL n 1 124 LEU n 1 125 LYS n 1 126 GLU n 1 127 ALA n 1 128 VAL n 1 129 ALA n 1 130 ASN n 1 131 LYS n 1 132 GLY n 1 133 PRO n 1 134 VAL n 1 135 SER n 1 136 VAL n 1 137 GLY n 1 138 VAL n 1 139 ASP n 1 140 ALA n 1 141 ARG n 1 142 HIS n 1 143 PRO n 1 144 SER n 1 145 PHE n 1 146 PHE n 1 147 LEU n 1 148 TYR n 1 149 ARG n 1 150 SER n 1 151 GLY n 1 152 VAL n 1 153 TYR n 1 154 TYR n 1 155 GLU n 1 156 PRO n 1 157 SER n 1 158 CYS n 1 159 THR n 1 160 GLN n 1 161 ASN n 1 162 VAL n 1 163 ASN n 1 164 HIS n 1 165 GLY n 1 166 VAL n 1 167 LEU n 1 168 VAL n 1 169 VAL n 1 170 GLY n 1 171 TYR n 1 172 GLY n 1 173 ASP n 1 174 LEU n 1 175 ASN n 1 176 GLY n 1 177 LYS n 1 178 GLU n 1 179 TYR n 1 180 TRP n 1 181 LEU n 1 182 VAL n 1 183 LYS n 1 184 ASN n 1 185 SER n 1 186 TRP n 1 187 GLY n 1 188 HIS n 1 189 ASN n 1 190 PHE n 1 191 GLY n 1 192 GLU n 1 193 LYS n 1 194 GLY n 1 195 TYR n 1 196 ILE n 1 197 ARG n 1 198 MET n 1 199 ALA n 1 200 ARG n 1 201 ASN n 1 202 LYS n 1 203 GLY n 1 204 ASN n 1 205 HIS n 1 206 CYS n 1 207 GLY n 1 208 ILE n 1 209 ALA n 1 210 SER n 1 211 PHE n 1 212 PRO n 1 213 SER n 1 214 TYR n 1 215 PRO n 1 216 GLU n 1 217 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATS_HUMAN _struct_ref.pdbx_db_accession P25774 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 115 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FYE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25774 _struct_ref_seq.db_align_beg 115 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 331 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 211 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FYE LYS A 59 B UNP P25774 GLU 173 variant 57 1 1 2FYE ALA A 104 ? UNP P25774 LYS 218 variant 100 2 1 2FYE ARG A 111 ? UNP P25774 SER 225 'engineered mutation' 108 3 1 2FYE LYS A 193 ? UNP P25774 GLU 307 'engineered mutation' 184 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BCQ non-polymer . ;N-[(1R)-1-[({[(5S)-3,5-DIMETHYL-2,5-DIHYDROISOXAZOL-4-YL]METHYL}SULFONYL)METHYL]-2-OXO-2-({(1S)-3-PHENYL-1-[2-(PHENYLSULFONYL)ETHYL]PROPYL}AMINO)ETHYL]MORPHOLINE-4-CARBOXAMIDE ; ? 'C31 H42 N4 O8 S2' 662.817 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2FYE _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.11 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 70.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 280 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;Under typical crystallization conditions the reservoir contained 80 mM ammonium sulfate and 12% (w/v) polyethylene glycol 8000. This was allowed to equilibrate with a hanging drop containing 2 microliters of the reservoir solution and 2 microliters of a 10 mg/mL protein solution in 25 mM sodium acetate (pH 4.5). , VAPOR DIFFUSION, temperature 280K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 280.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2000-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2FYE _reflns.d_resolution_high 2.200 _reflns.d_resolution_low 100.000 _reflns.number_obs 18684 _reflns.pdbx_Rmerge_I_obs 0.124 _reflns.pdbx_netI_over_sigmaI 7.600 _reflns.pdbx_chi_squared 1.020 _reflns.percent_possible_obs 91.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs 1913 _reflns_shell.Rmerge_I_obs 0.632 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.144 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs 94.40 _reflns_shell.number_unique_all ? _reflns_shell.percent_possible_all 94.4 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 65.700 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 85.500 _refine.ls_number_reflns_obs 17532 _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.21 _refine.ls_percent_reflns_R_free 8.300 _refine.ls_number_reflns_R_free 1705 _refine.B_iso_mean 21.927 _refine.aniso_B[1][1] 2.059 _refine.aniso_B[2][2] -1.951 _refine.aniso_B[3][3] -0.108 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.overall_FOM_work_R_set 0.853 _refine.entry_id 2FYE _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.208 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2FYE _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1640 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 1763 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 65.700 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.200 2.220 34 . 448 . 0.324 0.38 . 43 . . 491 . 'X-RAY DIFFRACTION' 2.220 2.240 34 . 444 . 0.316 0.349 . 43 . . 487 . 'X-RAY DIFFRACTION' 2.240 2.270 34 . 436 . 0.3 0.351 . 49 . . 485 . 'X-RAY DIFFRACTION' 2.270 2.290 34 . 444 . 0.297 0.228 . 39 . . 483 . 'X-RAY DIFFRACTION' 2.290 2.320 34 . 423 . 0.29 0.332 . 57 . . 480 . 'X-RAY DIFFRACTION' 2.320 2.350 34 . 463 . 0.288 0.292 . 46 . . 509 . 'X-RAY DIFFRACTION' 2.350 2.380 34 . 446 . 0.265 0.268 . 51 . . 497 . 'X-RAY DIFFRACTION' 2.380 2.410 34 . 469 . 0.268 0.291 . 45 . . 514 . 'X-RAY DIFFRACTION' 2.410 2.440 34 . 479 . 0.261 0.299 . 53 . . 532 . 'X-RAY DIFFRACTION' 2.440 2.470 34 . 446 . 0.275 0.3 . 53 . . 499 . 'X-RAY DIFFRACTION' 2.470 2.510 34 . 477 . 0.254 0.303 . 42 . . 519 . 'X-RAY DIFFRACTION' 2.510 2.540 34 . 461 . 0.263 0.368 . 38 . . 499 . 'X-RAY DIFFRACTION' 2.540 2.580 34 . 496 . 0.239 0.308 . 51 . . 547 . 'X-RAY DIFFRACTION' 2.580 2.630 34 . 448 . 0.247 0.286 . 47 . . 495 . 'X-RAY DIFFRACTION' 2.630 2.670 34 . 484 . 0.216 0.206 . 49 . . 533 . 'X-RAY DIFFRACTION' 2.670 2.720 34 . 470 . 0.222 0.262 . 46 . . 516 . 'X-RAY DIFFRACTION' 2.720 2.770 34 . 472 . 0.215 0.213 . 45 . . 517 . 'X-RAY DIFFRACTION' 2.770 2.830 34 . 471 . 0.227 0.248 . 58 . . 529 . 'X-RAY DIFFRACTION' 2.830 2.890 34 . 465 . 0.217 0.227 . 45 . . 510 . 'X-RAY DIFFRACTION' 2.890 2.960 34 . 498 . 0.217 0.232 . 43 . . 541 . 'X-RAY DIFFRACTION' 2.960 3.030 34 . 471 . 0.206 0.244 . 60 . . 531 . 'X-RAY DIFFRACTION' 3.030 3.110 34 . 468 . 0.183 0.287 . 53 . . 521 . 'X-RAY DIFFRACTION' 3.110 3.200 34 . 481 . 0.175 0.23 . 56 . . 537 . 'X-RAY DIFFRACTION' 3.200 3.310 34 . 488 . 0.176 0.244 . 51 . . 539 . 'X-RAY DIFFRACTION' 3.310 3.430 34 . 485 . 0.162 0.223 . 48 . . 533 . 'X-RAY DIFFRACTION' 3.430 3.560 34 . 474 . 0.148 0.174 . 56 . . 530 . 'X-RAY DIFFRACTION' 3.560 3.730 34 . 477 . 0.143 0.153 . 47 . . 524 . 'X-RAY DIFFRACTION' 3.730 3.920 34 . 483 . 0.133 0.141 . 56 . . 539 . 'X-RAY DIFFRACTION' 3.920 4.170 34 . 474 . 0.118 0.106 . 45 . . 519 . 'X-RAY DIFFRACTION' 4.170 4.490 34 . 470 . 0.129 0.128 . 60 . . 530 . 'X-RAY DIFFRACTION' 4.490 4.940 34 . 456 . 0.123 0.125 . 60 . . 516 . 'X-RAY DIFFRACTION' 4.940 5.660 34 . 457 . 0.146 0.127 . 63 . . 520 . 'X-RAY DIFFRACTION' 5.660 7.130 34 . 475 . 0.173 0.261 . 39 . . 514 . 'X-RAY DIFFRACTION' 7.130 500.010 34 . 428 . 0.175 0.162 . 68 . . 496 . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 MSI_CNX_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 parhcsdx_from_mary.pro ? 'X-RAY DIFFRACTION' 3 MSI_CNX_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2FYE _struct.title 'Mutant Human Cathepsin S with irreversible inhibitor CRA-14013' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FYE _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'papain, cysteine protease, drug design, 14013, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biologically-relevant unit is probably the monomer. There is one monomer/asymmetric unit.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 24 ? GLY A 43 ? ALA A 24 GLY A 43 1 ? 20 HELX_P HELX_P2 2 SER A 49 ? SER A 57 ? SER A 49 SER A 57 1 ? 9 HELX_P HELX_P3 3 THR A 58 A GLY A 62 ? THR A 57 GLY A 59 5 ? 5 HELX_P HELX_P4 4 LYS A 64 ? GLY A 68 ? LYS A 61 GLY A 65 5 ? 5 HELX_P HELX_P5 5 PHE A 70 ? LYS A 82 A PHE A 67 LYS A 78 1 ? 13 HELX_P HELX_P6 6 ASP A 102 ? ALA A 104 ? ASP A 98 ALA A 100 5 ? 3 HELX_P HELX_P7 7 ARG A 120 ? LYS A 131 A ARG A 117 LYS A 127 1 ? 12 HELX_P HELX_P8 8 HIS A 142 ? LEU A 147 ? HIS A 138 LEU A 143 1 ? 6 HELX_P HELX_P9 9 ASN A 204 ? ILE A 208 ? ASN A 198 ILE A 202 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 66 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 56 A CYS 95 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? A CYS 158 SG ? ? ? 1_555 A CYS 206 SG ? ? A CYS 153 A CYS 200 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale none ? A CYS 25 SG ? ? ? 1_555 B BCQ . CT ? ? A CYS 25 A BCQ 281 1_555 ? ? ? ? ? ? ? 1.795 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 5 ? ASP A 6 ? VAL A 5 ASP A 6 A 2 HIS A 164 ? LEU A 174 A HIS A 159 LEU A 168 A 3 VAL A 134 ? VAL A 138 ? VAL A 130 VAL A 134 B 1 VAL A 5 ? ASP A 6 ? VAL A 5 ASP A 6 B 2 HIS A 164 ? LEU A 174 A HIS A 159 LEU A 168 B 3 LYS A 177 D LYS A 183 ? LYS A 168 LYS A 174 B 4 TYR A 195 ? ALA A 199 ? TYR A 186 ALA A 190 B 5 VAL A 152 ? TYR A 153 ? VAL A 148 TYR A 149 C 1 ILE A 84 ? ASP A 85 ? ILE A 80 ASP A 81 C 2 ARG A 106 ? ALA A 108 ? ARG A 102 ALA A 105 D 1 LYS A 112 ? GLU A 115 ? LYS A 109 GLU A 112 D 2 SER A 213 ? GLU A 216 ? SER A 207 GLU A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 5 ? N VAL A 5 O TYR A 171 ? O TYR A 166 A 2 3 O VAL A 166 ? O VAL A 161 N VAL A 136 ? N VAL A 132 B 1 2 N VAL A 5 ? N VAL A 5 O TYR A 171 ? O TYR A 166 B 2 3 N GLY A 170 ? N GLY A 165 O LEU A 181 ? O LEU A 172 B 3 4 N VAL A 182 ? N VAL A 173 O ILE A 196 ? O ILE A 187 B 4 5 O ARG A 197 ? O ARG A 188 N TYR A 153 ? N TYR A 149 C 1 2 N ILE A 84 ? N ILE A 80 O ALA A 107 ? O ALA A 103 D 1 2 N THR A 114 ? N THR A 111 O TYR A 214 ? O TYR A 208 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BCQ _struct_site.pdbx_auth_seq_id 281 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'BINDING SITE FOR RESIDUE BCQ A 281' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 GLN A 19 ? GLN A 19 . ? 1_555 ? 2 AC1 18 GLY A 23 ? GLY A 23 . ? 1_555 ? 3 AC1 18 CYS A 25 ? CYS A 25 . ? 1_555 ? 4 AC1 18 TRP A 26 ? TRP A 26 . ? 1_555 ? 5 AC1 18 CYS A 66 ? CYS A 63 . ? 1_555 ? 6 AC1 18 GLY A 68 ? GLY A 65 . ? 1_555 ? 7 AC1 18 GLY A 69 ? GLY A 66 . ? 1_555 ? 8 AC1 18 PHE A 70 ? PHE A 67 . ? 1_555 ? 9 AC1 18 MET A 71 ? MET A 68 . ? 1_555 ? 10 AC1 18 GLY A 137 ? GLY A 133 . ? 1_555 ? 11 AC1 18 ALA A 140 ? ALA A 136 . ? 1_555 ? 12 AC1 18 VAL A 162 ? VAL A 157 . ? 1_555 ? 13 AC1 18 ASN A 163 ? ASN A 158 . ? 1_555 ? 14 AC1 18 HIS A 164 ? HIS A 159 . ? 1_555 ? 15 AC1 18 TRP A 186 ? TRP A 177 . ? 1_555 ? 16 AC1 18 PHE A 211 ? PHE A 205 . ? 1_555 ? 17 AC1 18 HOH C . ? HOH A 347 . ? 2_655 ? 18 AC1 18 HOH C . ? HOH A 356 . ? 1_555 ? # _atom_sites.entry_id 2FYE _atom_sites.fract_transf_matrix[1][1] 0.012566 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011705 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008601 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 THR 58 57 57 THR THR A A n A 1 59 LYS 59 57 57 LYS LYS A B n A 1 60 LYS 60 57 57 LYS LYS A C n A 1 61 TYR 61 58 58 TYR TYR A . n A 1 62 GLY 62 59 59 GLY GLY A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 LYS 64 61 61 LYS LYS A . n A 1 65 GLY 65 62 62 GLY GLY A . n A 1 66 CYS 66 63 63 CYS CYS A . n A 1 67 ASN 67 64 64 ASN ASN A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 GLY 69 66 66 GLY GLY A . n A 1 70 PHE 70 67 67 PHE PHE A . n A 1 71 MET 71 68 68 MET MET A . n A 1 72 THR 72 69 69 THR THR A . n A 1 73 THR 73 70 70 THR THR A . n A 1 74 ALA 74 71 71 ALA ALA A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 GLN 76 73 73 GLN GLN A . n A 1 77 TYR 77 74 74 TYR TYR A . n A 1 78 ILE 78 75 75 ILE ILE A . n A 1 79 ILE 79 76 76 ILE ILE A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 ASN 81 78 78 ASN ASN A . n A 1 82 LYS 82 78 78 LYS LYS A A n A 1 83 GLY 83 79 79 GLY GLY A . n A 1 84 ILE 84 80 80 ILE ILE A . n A 1 85 ASP 85 81 81 ASP ASP A . n A 1 86 SER 86 82 82 SER SER A . n A 1 87 ASP 87 83 83 ASP ASP A . n A 1 88 ALA 88 84 84 ALA ALA A . n A 1 89 SER 89 85 85 SER SER A . n A 1 90 TYR 90 86 86 TYR TYR A . n A 1 91 PRO 91 87 87 PRO PRO A . n A 1 92 TYR 92 88 88 TYR TYR A . n A 1 93 LYS 93 89 89 LYS LYS A . n A 1 94 ALA 94 90 90 ALA ALA A . n A 1 95 MET 95 91 91 MET MET A . n A 1 96 ASP 96 92 92 ASP ASP A . n A 1 97 GLN 97 93 93 GLN GLN A . n A 1 98 LYS 98 94 94 LYS LYS A . n A 1 99 CYS 99 95 95 CYS CYS A . n A 1 100 GLN 100 96 96 GLN GLN A . n A 1 101 TYR 101 97 97 TYR TYR A . n A 1 102 ASP 102 98 98 ASP ASP A . n A 1 103 SER 103 99 99 SER SER A . n A 1 104 ALA 104 100 100 ALA ALA A . n A 1 105 TYR 105 101 101 TYR TYR A . n A 1 106 ARG 106 102 102 ARG ARG A . n A 1 107 ALA 107 103 103 ALA ALA A . n A 1 108 ALA 108 105 105 ALA ALA A . n A 1 109 THR 109 106 106 THR THR A . n A 1 110 CYS 110 107 107 CYS CYS A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 LYS 112 109 109 LYS LYS A . n A 1 113 TYR 113 110 110 TYR TYR A . n A 1 114 THR 114 111 111 THR THR A . n A 1 115 GLU 115 112 112 GLU GLU A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 PRO 117 114 114 PRO PRO A . n A 1 118 TYR 118 115 115 TYR TYR A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ARG 120 117 117 ARG ARG A . n A 1 121 GLU 121 118 118 GLU GLU A . n A 1 122 ASP 122 119 119 ASP ASP A . n A 1 123 VAL 123 120 120 VAL VAL A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 GLU 126 123 123 GLU GLU A . n A 1 127 ALA 127 124 124 ALA ALA A . n A 1 128 VAL 128 125 125 VAL VAL A . n A 1 129 ALA 129 126 126 ALA ALA A . n A 1 130 ASN 130 127 127 ASN ASN A . n A 1 131 LYS 131 127 127 LYS LYS A A n A 1 132 GLY 132 128 128 GLY GLY A . n A 1 133 PRO 133 129 129 PRO PRO A . n A 1 134 VAL 134 130 130 VAL VAL A . n A 1 135 SER 135 131 131 SER SER A . n A 1 136 VAL 136 132 132 VAL VAL A . n A 1 137 GLY 137 133 133 GLY GLY A . n A 1 138 VAL 138 134 134 VAL VAL A . n A 1 139 ASP 139 135 135 ASP ASP A . n A 1 140 ALA 140 136 136 ALA ALA A . n A 1 141 ARG 141 137 137 ARG ARG A . n A 1 142 HIS 142 138 138 HIS HIS A . n A 1 143 PRO 143 139 139 PRO PRO A . n A 1 144 SER 144 140 140 SER SER A . n A 1 145 PHE 145 141 141 PHE PHE A . n A 1 146 PHE 146 142 142 PHE PHE A . n A 1 147 LEU 147 143 143 LEU LEU A . n A 1 148 TYR 148 144 144 TYR TYR A . n A 1 149 ARG 149 145 145 ARG ARG A . n A 1 150 SER 150 146 146 SER SER A . n A 1 151 GLY 151 147 147 GLY GLY A . n A 1 152 VAL 152 148 148 VAL VAL A . n A 1 153 TYR 153 149 149 TYR TYR A . n A 1 154 TYR 154 150 150 TYR TYR A . n A 1 155 GLU 155 151 151 GLU GLU A . n A 1 156 PRO 156 152 152 PRO PRO A . n A 1 157 SER 157 152 152 SER SER A A n A 1 158 CYS 158 153 153 CYS CYS A . n A 1 159 THR 159 154 154 THR THR A . n A 1 160 GLN 160 155 155 GLN GLN A . n A 1 161 ASN 161 156 156 ASN ASN A . n A 1 162 VAL 162 157 157 VAL VAL A . n A 1 163 ASN 163 158 158 ASN ASN A . n A 1 164 HIS 164 159 159 HIS HIS A . n A 1 165 GLY 165 160 160 GLY GLY A . n A 1 166 VAL 166 161 161 VAL VAL A . n A 1 167 LEU 167 162 162 LEU LEU A . n A 1 168 VAL 168 163 163 VAL VAL A . n A 1 169 VAL 169 164 164 VAL VAL A . n A 1 170 GLY 170 165 165 GLY GLY A . n A 1 171 TYR 171 166 166 TYR TYR A . n A 1 172 GLY 172 167 167 GLY GLY A . n A 1 173 ASP 173 168 168 ASP ASP A . n A 1 174 LEU 174 168 168 LEU LEU A A n A 1 175 ASN 175 168 168 ASN ASN A B n A 1 176 GLY 176 168 168 GLY GLY A C n A 1 177 LYS 177 168 168 LYS LYS A D n A 1 178 GLU 178 169 169 GLU GLU A . n A 1 179 TYR 179 170 170 TYR TYR A . n A 1 180 TRP 180 171 171 TRP TRP A . n A 1 181 LEU 181 172 172 LEU LEU A . n A 1 182 VAL 182 173 173 VAL VAL A . n A 1 183 LYS 183 174 174 LYS LYS A . n A 1 184 ASN 184 175 175 ASN ASN A . n A 1 185 SER 185 176 176 SER SER A . n A 1 186 TRP 186 177 177 TRP TRP A . n A 1 187 GLY 187 178 178 GLY GLY A . n A 1 188 HIS 188 179 179 HIS HIS A . n A 1 189 ASN 189 180 180 ASN ASN A . n A 1 190 PHE 190 181 181 PHE PHE A . n A 1 191 GLY 191 182 182 GLY GLY A . n A 1 192 GLU 192 183 183 GLU GLU A . n A 1 193 LYS 193 184 184 LYS LYS A . n A 1 194 GLY 194 185 185 GLY GLY A . n A 1 195 TYR 195 186 186 TYR TYR A . n A 1 196 ILE 196 187 187 ILE ILE A . n A 1 197 ARG 197 188 188 ARG ARG A . n A 1 198 MET 198 189 189 MET MET A . n A 1 199 ALA 199 190 190 ALA ALA A . n A 1 200 ARG 200 191 191 ARG ARG A . n A 1 201 ASN 201 192 192 ASN ASN A . n A 1 202 LYS 202 193 193 LYS LYS A . n A 1 203 GLY 203 194 194 GLY GLY A . n A 1 204 ASN 204 198 198 ASN ASN A . n A 1 205 HIS 205 199 199 HIS HIS A . n A 1 206 CYS 206 200 200 CYS CYS A . n A 1 207 GLY 207 201 201 GLY GLY A . n A 1 208 ILE 208 202 202 ILE ILE A . n A 1 209 ALA 209 203 203 ALA ALA A . n A 1 210 SER 210 204 204 SER SER A . n A 1 211 PHE 211 205 205 PHE PHE A . n A 1 212 PRO 212 206 206 PRO PRO A . n A 1 213 SER 213 207 207 SER SER A . n A 1 214 TYR 214 208 208 TYR TYR A . n A 1 215 PRO 215 209 209 PRO PRO A . n A 1 216 GLU 216 210 210 GLU GLU A . n A 1 217 ILE 217 211 211 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BCQ 1 281 281 BCQ BCQ A . C 3 HOH 1 282 1 HOH HOH A . C 3 HOH 2 283 2 HOH HOH A . C 3 HOH 3 284 3 HOH HOH A . C 3 HOH 4 285 4 HOH HOH A . C 3 HOH 5 286 5 HOH HOH A . C 3 HOH 6 287 6 HOH HOH A . C 3 HOH 7 288 7 HOH HOH A . C 3 HOH 8 289 8 HOH HOH A . C 3 HOH 9 290 9 HOH HOH A . C 3 HOH 10 291 10 HOH HOH A . C 3 HOH 11 292 11 HOH HOH A . C 3 HOH 12 293 12 HOH HOH A . C 3 HOH 13 294 13 HOH HOH A . C 3 HOH 14 295 14 HOH HOH A . C 3 HOH 15 296 15 HOH HOH A . C 3 HOH 16 297 16 HOH HOH A . C 3 HOH 17 298 17 HOH HOH A . C 3 HOH 18 299 18 HOH HOH A . C 3 HOH 19 300 19 HOH HOH A . C 3 HOH 20 301 20 HOH HOH A . C 3 HOH 21 302 21 HOH HOH A . C 3 HOH 22 303 22 HOH HOH A . C 3 HOH 23 304 23 HOH HOH A . C 3 HOH 24 305 24 HOH HOH A . C 3 HOH 25 306 25 HOH HOH A . C 3 HOH 26 307 26 HOH HOH A . C 3 HOH 27 308 27 HOH HOH A . C 3 HOH 28 309 28 HOH HOH A . C 3 HOH 29 310 29 HOH HOH A . C 3 HOH 30 311 30 HOH HOH A . C 3 HOH 31 312 31 HOH HOH A . C 3 HOH 32 313 32 HOH HOH A . C 3 HOH 33 314 33 HOH HOH A . C 3 HOH 34 315 34 HOH HOH A . C 3 HOH 35 316 35 HOH HOH A . C 3 HOH 36 317 36 HOH HOH A . C 3 HOH 37 318 37 HOH HOH A . C 3 HOH 38 319 38 HOH HOH A . C 3 HOH 39 320 39 HOH HOH A . C 3 HOH 40 321 40 HOH HOH A . C 3 HOH 41 322 41 HOH HOH A . C 3 HOH 42 323 42 HOH HOH A . C 3 HOH 43 324 43 HOH HOH A . C 3 HOH 44 325 44 HOH HOH A . C 3 HOH 45 326 45 HOH HOH A . C 3 HOH 46 327 46 HOH HOH A . C 3 HOH 47 328 47 HOH HOH A . C 3 HOH 48 329 48 HOH HOH A . C 3 HOH 49 330 49 HOH HOH A . C 3 HOH 50 331 50 HOH HOH A . C 3 HOH 51 332 51 HOH HOH A . C 3 HOH 52 333 52 HOH HOH A . C 3 HOH 53 334 53 HOH HOH A . C 3 HOH 54 335 54 HOH HOH A . C 3 HOH 55 336 55 HOH HOH A . C 3 HOH 56 337 56 HOH HOH A . C 3 HOH 57 338 57 HOH HOH A . C 3 HOH 58 339 58 HOH HOH A . C 3 HOH 59 340 59 HOH HOH A . C 3 HOH 60 341 60 HOH HOH A . C 3 HOH 61 342 61 HOH HOH A . C 3 HOH 62 343 62 HOH HOH A . C 3 HOH 63 344 63 HOH HOH A . C 3 HOH 64 345 64 HOH HOH A . C 3 HOH 65 346 65 HOH HOH A . C 3 HOH 66 347 66 HOH HOH A . C 3 HOH 67 348 67 HOH HOH A . C 3 HOH 68 349 68 HOH HOH A . C 3 HOH 69 350 69 HOH HOH A . C 3 HOH 70 351 70 HOH HOH A . C 3 HOH 71 352 71 HOH HOH A . C 3 HOH 72 353 72 HOH HOH A . C 3 HOH 73 354 73 HOH HOH A . C 3 HOH 74 355 74 HOH HOH A . C 3 HOH 75 356 75 HOH HOH A . C 3 HOH 76 357 76 HOH HOH A . C 3 HOH 77 358 77 HOH HOH A . C 3 HOH 78 359 78 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CNS . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 24 ? ? -87.57 34.91 2 1 THR A 57 A ? -107.29 -135.97 3 1 ASN A 158 ? ? -151.36 -7.23 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C16 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id BCQ _pdbx_validate_chiral.auth_seq_id 281 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 9 ? CG ? A GLU 9 CG 2 1 Y 1 A GLU 9 ? CD ? A GLU 9 CD 3 1 Y 1 A GLU 9 ? OE1 ? A GLU 9 OE1 4 1 Y 1 A GLU 9 ? OE2 ? A GLU 9 OE2 5 1 Y 1 A LYS 41 ? CG ? A LYS 41 CG 6 1 Y 1 A LYS 41 ? CD ? A LYS 41 CD 7 1 Y 1 A LYS 41 ? CE ? A LYS 41 CE 8 1 Y 1 A LYS 41 ? NZ ? A LYS 41 NZ 9 1 Y 1 A LYS 44 ? CG ? A LYS 44 CG 10 1 Y 1 A LYS 44 ? CD ? A LYS 44 CD 11 1 Y 1 A LYS 44 ? CE ? A LYS 44 CE 12 1 Y 1 A LYS 44 ? NZ ? A LYS 44 NZ 13 1 Y 1 A LYS 57 B CG ? A LYS 59 CG 14 1 Y 1 A LYS 57 B CD ? A LYS 59 CD 15 1 Y 1 A LYS 57 B CE ? A LYS 59 CE 16 1 Y 1 A LYS 57 B NZ ? A LYS 59 NZ 17 1 Y 1 A LYS 57 C CG ? A LYS 60 CG 18 1 Y 1 A LYS 57 C CD ? A LYS 60 CD 19 1 Y 1 A LYS 57 C CE ? A LYS 60 CE 20 1 Y 1 A LYS 57 C NZ ? A LYS 60 NZ 21 1 Y 1 A LYS 78 A CG ? A LYS 82 CG 22 1 Y 1 A LYS 78 A CD ? A LYS 82 CD 23 1 Y 1 A LYS 78 A CE ? A LYS 82 CE 24 1 Y 1 A LYS 78 A NZ ? A LYS 82 NZ 25 1 Y 1 A LYS 89 ? CG ? A LYS 93 CG 26 1 Y 1 A LYS 89 ? CD ? A LYS 93 CD 27 1 Y 1 A LYS 89 ? CE ? A LYS 93 CE 28 1 Y 1 A LYS 89 ? NZ ? A LYS 93 NZ 29 1 Y 1 A LYS 94 ? CG ? A LYS 98 CG 30 1 Y 1 A LYS 94 ? CD ? A LYS 98 CD 31 1 Y 1 A LYS 94 ? CE ? A LYS 98 CE 32 1 Y 1 A LYS 94 ? NZ ? A LYS 98 NZ 33 1 Y 1 A ARG 108 ? CG ? A ARG 111 CG 34 1 Y 1 A ARG 108 ? CD ? A ARG 111 CD 35 1 Y 1 A ARG 108 ? NE ? A ARG 111 NE 36 1 Y 1 A ARG 108 ? CZ ? A ARG 111 CZ 37 1 Y 1 A ARG 108 ? NH1 ? A ARG 111 NH1 38 1 Y 1 A ARG 108 ? NH2 ? A ARG 111 NH2 39 1 Y 1 A HIS 179 ? CG ? A HIS 188 CG 40 1 Y 1 A HIS 179 ? ND1 ? A HIS 188 ND1 41 1 Y 1 A HIS 179 ? CD2 ? A HIS 188 CD2 42 1 Y 1 A HIS 179 ? CE1 ? A HIS 188 CE1 43 1 Y 1 A HIS 179 ? NE2 ? A HIS 188 NE2 44 1 Y 1 A LYS 184 ? CG ? A LYS 193 CG 45 1 Y 1 A LYS 184 ? CD ? A LYS 193 CD 46 1 Y 1 A LYS 184 ? CE ? A LYS 193 CE 47 1 Y 1 A LYS 184 ? NZ ? A LYS 193 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;N-[(1R)-1-[({[(5S)-3,5-DIMETHYL-2,5-DIHYDROISOXAZOL-4-YL]METHYL}SULFONYL)METHYL]-2-OXO-2-({(1S)-3-PHENYL-1-[2-(PHENYLSULFONYL)ETHYL]PROPYL}AMINO)ETHYL]MORPHOLINE-4-CARBOXAMIDE ; BCQ 3 water HOH #