HEADER RNA 14-FEB-06 2G1G TITLE SOLUTION STRUCTURE OF THE ANTICODON LOOP OF S. POMBE TRNAI INCLUDING TITLE 2 THE NATURALLY OCCURRING N6-THREONYL ADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*AP*CP*GP*GP*GP*CP*UP*CP*AP*UP*(T6A) COMPND 3 P*AP*CP*CP*CP*GP*U)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ANTICODONLOOP TRNAI SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PHOSPHORAMIDATE OLIGONUCLEOTIDE SYNTHESIS; THE SOURCE 4 SEQUENCE OF THIS RNA CAN BE FOUND NATURALLY IN S. POMBE. KEYWDS T-RNAI ANTICODONLOOP T6A, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.LESCRINIER REVDAT 3 09-MAR-22 2G1G 1 REMARK LINK REVDAT 2 24-FEB-09 2G1G 1 VERSN REVDAT 1 20-JUN-06 2G1G 0 JRNL AUTH E.LESCRINIER,K.NAUWELAERTS,K.ZANIER,K.POESEN,M.SATTLER, JRNL AUTH 2 P.HERDEWIJN JRNL TITL THE NATURALLY OCCURRING N6-THREONYL ADENINE IN ANTICODON JRNL TITL 2 LOOP OF SCHIZOSACCHAROMYCES POMBE TRNAI CAUSES FORMATION OF JRNL TITL 3 A UNIQUE U-TURN MOTIF JRNL REF NUCLEIC ACIDS RES. V. 34 2878 2006 JRNL REFN ISSN 0305-1048 JRNL PMID 16738127 JRNL DOI 10.1093/NAR/GKL081 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1 REV2002.113.19.37, X-PLOR NIH REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G1G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036568. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295; 278 REMARK 210 PH : 7.4; 7.4 REMARK 210 IONIC STRENGTH : ...; ... REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM RNA; PH 7.4; 100% D2O; REMARK 210 0.6MM RNA; PH 7.4; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; REMARK 210 [1H,13C]HSQC; [1H,31P]HETCOR; 2D- REMARK 210 WATERGATE-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 95, VNMR 6.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 73 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H42 C A 8 ODB T6A A 11 1.25 REMARK 500 O2 C A 6 HO4 T6A A 11 1.34 REMARK 500 HO2' C A 14 O5' C A 15 1.38 REMARK 500 HO2' U A 10 OP1 T6A A 11 1.55 REMARK 500 HO2' A A 1 O4' C A 2 1.58 REMARK 500 HO2' A A 12 O4' C A 13 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 2 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 3 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 3 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 4 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 4 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 4 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 4 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 4 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 4 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 5 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 5 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 5 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 5 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 220 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FEQ RELATED DB: PDB REMARK 900 ANTICODONLOOP OP TRNAUUU INCLUDING THE NATURALLY OCCURRING N6- REMARK 900 THREONYL ADENINE DBREF 2G1G A 1 17 PDB 2G1G 2G1G 1 17 SEQRES 1 A 17 A C G G G C U C A U T6A A C SEQRES 2 A 17 C C G U MODRES 2G1G T6A A 11 A HET T6A A 11 49 HETNAM T6A N-[N-(9-B-D-RIBOFURANOSYLPURIN-6-YL) HETNAM 2 T6A CARBAMOYL]THREONINE-5'-MONOPHOSPHATE HETSYN T6A N-(NEBULARIN-6-YLCARBAMOYL)-L-THREONINE-5'- HETSYN 2 T6A MONOPHOSPHATE FORMUL 1 T6A C15 H21 N6 O11 P LINK O3' U A 10 P T6A A 11 1555 1555 1.62 LINK O3' T6A A 11 P A A 12 1555 1555 1.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1