HEADER TRANSPORT PROTEIN 14-FEB-06 2G1U TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRANSPORT PROTEIN (TM1088A) FROM TITLE 2 THERMOTOGA MARITIMA AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TM1088A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1088A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 30-AUG-23 2G1U 1 REMARK LINK REVDAT 4 13-JUL-11 2G1U 1 VERSN REVDAT 3 28-JUL-10 2G1U 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2G1U 1 VERSN REVDAT 1 28-MAR-06 2G1U 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF (TM1088A) FROM THERMOTOGA MARITIMA AT JRNL TITL 2 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 26310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1236 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1053 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.93000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1216 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1124 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1653 ; 1.648 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2623 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 5.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;33.576 ;23.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 227 ;12.099 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;11.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 182 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1342 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 263 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 207 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1071 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 591 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 708 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 80 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.011 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.333 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.105 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 715 ; 1.608 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 296 ; 0.488 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1168 ; 2.775 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 510 ; 4.936 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 475 ; 7.609 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4780 31.7010 10.6960 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.0310 REMARK 3 T33: 0.0847 T12: -0.0185 REMARK 3 T13: -0.0053 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 3.6813 L22: 2.4591 REMARK 3 L33: 3.5422 L12: -0.5782 REMARK 3 L13: 1.2879 L23: -0.3377 REMARK 3 S TENSOR REMARK 3 S11: 0.1059 S12: -0.2571 S13: -0.1452 REMARK 3 S21: 0.0092 S22: 0.0151 S23: 0.2647 REMARK 3 S31: 0.1727 S32: -0.2989 S33: -0.1210 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1120 31.6780 -1.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0919 REMARK 3 T33: 0.0421 T12: 0.0051 REMARK 3 T13: -0.0149 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 9.7573 L22: 10.3760 REMARK 3 L33: 2.8558 L12: -7.0947 REMARK 3 L13: 0.6422 L23: -0.6559 REMARK 3 S TENSOR REMARK 3 S11: 0.1661 S12: 0.5073 S13: -0.3442 REMARK 3 S21: -0.5108 S22: -0.0636 S23: 0.1848 REMARK 3 S31: 0.3931 S32: -0.0174 S33: -0.1025 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8750 37.5750 10.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0800 REMARK 3 T33: 0.0291 T12: 0.0169 REMARK 3 T13: 0.0094 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.6254 L22: 1.0810 REMARK 3 L33: 2.4316 L12: 0.2282 REMARK 3 L13: 0.3381 L23: 0.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: -0.1211 S13: 0.0119 REMARK 3 S21: 0.0751 S22: 0.0377 S23: -0.0205 REMARK 3 S31: 0.0296 S32: 0.2446 S33: -0.0746 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0930 43.5630 30.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.0633 REMARK 3 T33: -0.0081 T12: -0.0584 REMARK 3 T13: 0.0336 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.7386 L22: 8.7482 REMARK 3 L33: 20.8118 L12: -3.6874 REMARK 3 L13: -3.0917 L23: 11.8285 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: -0.0559 S13: 0.1873 REMARK 3 S21: -0.2760 S22: 0.0791 S23: -0.0312 REMARK 3 S31: -0.6152 S32: 0.4024 S33: -0.1493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2) THE ASSIGNMENT OF NA ION WAS BASED ON COORDINATION, REMARK 3 GEOMETRY, AND THE ABSENCE OF AN ANOMALOUS DIFFERENCE PEAK. REMARK 3 (3) THERE ARE DIFFERENCE DENSITY PEAKS ALONG THE REMARK 3 CRYSTALLOGRAPHIC 2-FOLD THAT WERE LEFT UNMODELED. REMARK 3 (4) TLS GROUP PARTITIONING WAS AIDED BY TLSMD. REMARK 4 REMARK 4 2G1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26312 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.421 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1LSS CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.0% MPD, 5.0% PEG-8000, 0.1M REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 26.80154 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.51444 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 N CB CG CD CE NZ REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 LYS A 66 CE NZ REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 113 NZ REMARK 470 LYS A 134 NZ REMARK 470 SER A 140 C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 79 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 15 49.42 -105.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 144 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 118 OD1 REMARK 620 2 HOH A 305 O 88.5 REMARK 620 3 HOH A 308 O 89.2 83.5 REMARK 620 4 HOH A 317 O 89.0 170.0 86.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358957 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE: REMARK 999 NO SUITABLE SEQUENCE DATABASE REFERENCE WAS AVAILABLE AT REMARK 999 TIME OF PROCESSING THIS ENTRY. DBREF 2G1U A -11 143 PDB 2G1U 2G1U -11 143 SEQRES 1 A 155 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 155 SER LYS LYS GLN LYS SER LYS TYR ILE VAL ILE PHE GLY SEQRES 3 A 155 CYS GLY ARG LEU GLY SER LEU ILE ALA ASN LEU ALA SER SEQRES 4 A 155 SER SER GLY HIS SER VAL VAL VAL VAL ASP LYS ASN GLU SEQRES 5 A 155 TYR ALA PHE HIS ARG LEU ASN SER GLU PHE SER GLY PHE SEQRES 6 A 155 THR VAL VAL GLY ASP ALA ALA GLU PHE GLU THR LEU LYS SEQRES 7 A 155 GLU CYS GLY MET GLU LYS ALA ASP MET VAL PHE ALA PHE SEQRES 8 A 155 THR ASN ASP ASP SER THR ASN PHE PHE ILE SER MET ASN SEQRES 9 A 155 ALA ARG TYR MET PHE ASN VAL GLU ASN VAL ILE ALA ARG SEQRES 10 A 155 VAL TYR ASP PRO GLU LYS ILE LYS ILE PHE GLU GLU ASN SEQRES 11 A 155 GLY ILE LYS THR ILE CYS PRO ALA VAL LEU MET ILE GLU SEQRES 12 A 155 LYS VAL LYS GLU PHE ILE ILE GLY SER GLU GLU ASP HET NA A 144 1 HET AMP A 301 23 HET MPD A 302 8 HET MPD A 303 8 HETNAM NA SODIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 NA NA 1+ FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 MPD 2(C6 H14 O2) FORMUL 6 HOH *109(H2 O) HELIX 1 1 GLY A 16 SER A 29 1 14 HELIX 2 2 ASN A 39 LEU A 46 5 8 HELIX 3 3 GLU A 61 GLU A 67 1 7 HELIX 4 4 CYS A 68 ALA A 73 5 6 HELIX 5 5 ASP A 82 MET A 96 1 15 HELIX 6 6 ASP A 108 GLU A 110 5 3 HELIX 7 7 LYS A 111 GLU A 117 1 7 HELIX 8 8 CYS A 124 GLY A 139 1 16 SHEET 1 A 6 PHE A 53 VAL A 56 0 SHEET 2 A 6 SER A 32 ASP A 37 1 N VAL A 35 O PHE A 53 SHEET 3 A 6 TYR A 9 PHE A 13 1 N ILE A 10 O SER A 32 SHEET 4 A 6 MET A 75 ALA A 78 1 O PHE A 77 N PHE A 13 SHEET 5 A 6 ASN A 101 ARG A 105 1 O ILE A 103 N ALA A 78 SHEET 6 A 6 LYS A 121 ILE A 123 1 O LYS A 121 N ALA A 104 LINK OD1 ASN A 118 NA NA A 144 1555 1555 2.41 LINK NA NA A 144 O HOH A 305 1555 1555 2.49 LINK NA NA A 144 O HOH A 308 1555 1555 2.40 LINK NA NA A 144 O HOH A 317 1555 1555 2.44 SITE 1 AC1 4 ASN A 118 HOH A 305 HOH A 308 HOH A 317 SITE 1 AC2 17 GLY A 16 ARG A 17 ASP A 37 LYS A 38 SITE 2 AC2 17 GLY A 57 ASP A 58 ALA A 59 THR A 80 SITE 3 AC2 17 ASN A 81 ARG A 105 HOH A 304 HOH A 328 SITE 4 AC2 17 HOH A 352 HOH A 353 HOH A 354 HOH A 377 SITE 5 AC2 17 HOH A 378 SITE 1 AC3 1 HOH A 386 SITE 1 AC4 4 ILE A 10 LEU A 25 SER A 29 HIS A 31 CRYST1 47.859 35.140 56.579 90.00 111.85 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020900 0.000000 0.008380 0.00000 SCALE2 0.000000 0.028460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019040 0.00000