HEADER HYDROLASE 16-FEB-06 2G2J OBSLTE 02-OCT-07 2G2J 2RB4 TITLE STRUCTURE OF THE HELICASE DOMAIN OF THE HUMAN DDX25 RNA TITLE 2 HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX25; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: HELICASE DOMAIN; COMPND 5 SYNONYM: DEAD BOX PROTEIN 25, GONADOTROPIN-REGULATED COMPND 6 TESTICULAR RNA HELICASE; COMPND 7 EC: 3.6.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: DDX25, GRTH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS RNA, HELICASE, DEAD, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR M.HOGBOM,J.UPPENBERG,C.ARROWSMITH,H.BERGLUND,A.EDWARDS, AUTHOR 2 M.EHN,S.FLODIN,A.FLORES,S.GRASLUND,B.M.HALLBERG, AUTHOR 3 M.HAMMARSTROM,T.KOTENYOVA,P.NILSSON-EHLE,P.NORDLUND,T.NYMAN, AUTHOR 4 D.OGG,C.PERSSON,J.SAGEMARK,P.STENMARK,M.SUNDSTROM, AUTHOR 5 A.G.THORSELL,S.VAN DEN BERG,J.WEIGELT,L.HOLMBERG-SCHIAVONE, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 02-OCT-07 2G2J 1 OBSLTE REVDAT 1 28-FEB-06 2G2J 0 JRNL AUTH M.HOGBOM,J.UPPENBERG,C.ARROWSMITH,H.BERGLUND, JRNL AUTH 2 A.EDWARDS,M.EHN,S.FLODIN,A.FLORES,S.GRASLUND, JRNL AUTH 3 B.M.HALLBERG,M.HAMMARSTROM,T.KOTENYOVA, JRNL AUTH 4 P.NILSSON-EHLE,P.NORDLUND,T.NYMAN,D.OGG,C.PERSSON, JRNL AUTH 5 J.SAGEMARK,P.STENMARK,M.SUNDSTROM,A.G.THORSELL, JRNL AUTH 6 S.VAN DEN BERG,J.WEIGELT,L.HOLMBERG-SCHIAVONE JRNL TITL STRUCTURE OF THE HELICASE DOMAIN OF THE HUMAN JRNL TITL 2 DDX25 RNA HELICASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1106 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1529 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 5172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.706 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.389 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.333 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5190 ; 0.044 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3524 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6996 ; 3.472 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8592 ; 1.820 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ;12.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;39.308 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 976 ;25.378 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;22.039 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 812 ; 0.196 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5624 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1020 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1470 ; 0.297 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3639 ; 0.258 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2477 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3046 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.300 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.016 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.321 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.110 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3769 ; 1.669 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1280 ; 0.448 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5080 ; 2.228 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2312 ; 3.144 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1916 ; 4.703 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 307 A 474 1 REMARK 3 1 B 307 B 474 1 REMARK 3 1 C 307 C 474 1 REMARK 3 1 D 307 D 474 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2157 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 2157 ; 0.06 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 2157 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 2157 ; 0.07 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2157 ; 0.19 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 2157 ; 0.19 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 2157 ; 0.18 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 2157 ; 0.18 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 474 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6974 0.4315 0.7115 REMARK 3 T TENSOR REMARK 3 T11: -0.2990 T22: -0.2025 REMARK 3 T33: -0.0070 T12: 0.0058 REMARK 3 T13: 0.0333 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.0815 L22: 1.9191 REMARK 3 L33: 6.8742 L12: -1.9496 REMARK 3 L13: -2.1408 L23: 1.9177 REMARK 3 S TENSOR REMARK 3 S11: -0.1973 S12: 0.1490 S13: -0.2480 REMARK 3 S21: 0.1791 S22: -0.0173 S23: 0.2347 REMARK 3 S31: -0.0564 S32: -0.3529 S33: 0.2146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 307 B 474 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2389 -12.4754 19.0921 REMARK 3 T TENSOR REMARK 3 T11: -0.0135 T22: -0.2448 REMARK 3 T33: -0.0146 T12: 0.1231 REMARK 3 T13: 0.0591 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.0085 L22: 2.9002 REMARK 3 L33: 6.4887 L12: -2.3481 REMARK 3 L13: -1.3227 L23: 2.4795 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: 0.0463 S13: -0.2100 REMARK 3 S21: 0.2290 S22: -0.0248 S23: 0.1608 REMARK 3 S31: 0.2828 S32: 0.2056 S33: 0.1211 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 307 C 474 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6926 20.4440 18.7065 REMARK 3 T TENSOR REMARK 3 T11: -0.1765 T22: -0.3045 REMARK 3 T33: -0.0124 T12: 0.0055 REMARK 3 T13: -0.0078 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.6709 L22: 3.7005 REMARK 3 L33: 7.4610 L12: -2.0270 REMARK 3 L13: -2.0072 L23: 2.2202 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.1816 S13: -0.2278 REMARK 3 S21: 0.0389 S22: -0.1823 S23: 0.2277 REMARK 3 S31: 0.3151 S32: 0.0264 S33: 0.1476 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 307 D 474 REMARK 3 ORIGIN FOR THE GROUP (A): -47.5934 38.3960 0.3189 REMARK 3 T TENSOR REMARK 3 T11: -0.2870 T22: -0.0155 REMARK 3 T33: -0.0090 T12: 0.1252 REMARK 3 T13: -0.0048 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 2.8278 L22: 2.9943 REMARK 3 L33: 6.8493 L12: -2.6445 REMARK 3 L13: -2.6980 L23: 1.7956 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.1905 S13: -0.1576 REMARK 3 S21: 0.0603 S22: -0.0419 S23: 0.3003 REMARK 3 S31: -0.0934 S32: -0.3215 S33: 0.0656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REFINED WITH ONE TLS GROUP PER MONOMER AND REMARK 3 USING PHASES FROM NCS AVERAGING AND SOLVENT FLATTENING REMARK 4 REMARK 4 2G2J COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-03-17) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE RCSB ID CODE IS RCSB036607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-2006 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21004 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1FUK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE, 2.5 M REMARK 280 AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 -Y,X,3/4+Z REMARK 290 4555 Y,-X,1/4+Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.53000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.29500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 3 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 4 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 305 REMARK 465 MET A 306 REMARK 465 LYS A 418 REMARK 465 GLN A 419 REMARK 465 GLY A 420 REMARK 465 GLU A 421 REMARK 465 GLU A 422 REMARK 465 GLY A 436 REMARK 465 ARG A 437 REMARK 465 PHE A 438 REMARK 465 GLY A 439 REMARK 465 LYS A 440 REMARK 465 MET A 475 REMARK 465 ASP A 476 REMARK 465 GLU A 477 REMARK 465 ILE A 478 REMARK 465 GLU A 479 REMARK 465 LYS A 480 REMARK 465 ILE A 481 REMARK 465 ASP A 482 REMARK 465 TYR A 483 REMARK 465 SER B 305 REMARK 465 MET B 306 REMARK 465 LYS B 418 REMARK 465 GLN B 419 REMARK 465 GLY B 420 REMARK 465 GLU B 421 REMARK 465 GLU B 422 REMARK 465 GLY B 436 REMARK 465 ARG B 437 REMARK 465 PHE B 438 REMARK 465 GLY B 439 REMARK 465 LYS B 440 REMARK 465 MET B 475 REMARK 465 ASP B 476 REMARK 465 GLU B 477 REMARK 465 ILE B 478 REMARK 465 GLU B 479 REMARK 465 LYS B 480 REMARK 465 ILE B 481 REMARK 465 ASP B 482 REMARK 465 TYR B 483 REMARK 465 SER C 305 REMARK 465 MET C 306 REMARK 465 LYS C 418 REMARK 465 GLN C 419 REMARK 465 GLY C 420 REMARK 465 GLU C 421 REMARK 465 GLU C 422 REMARK 465 GLY C 436 REMARK 465 ARG C 437 REMARK 465 PHE C 438 REMARK 465 GLY C 439 REMARK 465 LYS C 440 REMARK 465 MET C 475 REMARK 465 ASP C 476 REMARK 465 GLU C 477 REMARK 465 ILE C 478 REMARK 465 GLU C 479 REMARK 465 LYS C 480 REMARK 465 ILE C 481 REMARK 465 ASP C 482 REMARK 465 TYR C 483 REMARK 465 SER D 305 REMARK 465 MET D 306 REMARK 465 LYS D 418 REMARK 465 GLN D 419 REMARK 465 GLY D 420 REMARK 465 GLU D 421 REMARK 465 GLU D 422 REMARK 465 GLY D 436 REMARK 465 ARG D 437 REMARK 465 PHE D 438 REMARK 465 GLY D 439 REMARK 465 LYS D 440 REMARK 465 MET D 475 REMARK 465 ASP D 476 REMARK 465 GLU D 477 REMARK 465 ILE D 478 REMARK 465 GLU D 479 REMARK 465 LYS D 480 REMARK 465 ILE D 481 REMARK 465 ASP D 482 REMARK 465 TYR D 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O HOH 2 O HOH 120 1.62 REMARK 500 NZ LYS B 323 O HOH 10 1.82 REMARK 500 O HOH 1 O HOH 7 1.89 REMARK 500 NH2 ARG A 349 O HOH 73 1.91 REMARK 500 NZ LYS A 323 O HOH 133 1.93 REMARK 500 O2 SO4 151 O1 SO4 152 1.96 REMARK 500 NZ LYS A 468 O HOH 61 2.00 REMARK 500 CG2 VAL C 417 O HOH 114 2.04 REMARK 500 NZ LYS D 323 O HOH 31 2.05 REMARK 500 O GLN D 340 O VAL D 407 2.06 REMARK 500 NE2 GLN B 314 OH TYR B 428 2.10 REMARK 500 NE2 GLN D 314 OH TYR D 428 2.10 REMARK 500 NE2 GLN C 314 OH TYR C 428 2.15 REMARK 500 O ASP B 474 O HOH 105 2.17 REMARK 500 NE2 GLN A 314 OH TYR A 428 2.18 REMARK 500 O ASP D 474 O HOH 118 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 348 CG ARG A 348 CD 0.291 REMARK 500 GLU B 426 CB GLU B 426 CG 0.270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 392 CB - CG - CD1 ANGL. DEV. =-21.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 408 -55.64 78.24 REMARK 500 THR B 408 -51.36 79.83 REMARK 500 ARG C 400 120.05 63.68 REMARK 500 THR C 408 -52.37 78.36 REMARK 500 THR D 408 -48.87 75.24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 311 ILE A 312 -125.74 REMARK 500 GLY A 442 LEU A 443 -146.11 REMARK 500 GLN A 469 LEU A 470 146.35 REMARK 500 GLU A 473 ASP A 474 141.91 REMARK 500 ASN B 311 ILE B 312 -124.56 REMARK 500 GLY B 442 LEU B 443 -145.79 REMARK 500 GLN B 469 LEU B 470 145.79 REMARK 500 GLU B 473 ASP B 474 141.84 REMARK 500 LEU C 307 THR C 308 -148.81 REMARK 500 ASN C 311 ILE C 312 -127.28 REMARK 500 GLY C 442 LEU C 443 -148.44 REMARK 500 GLN C 469 LEU C 470 146.98 REMARK 500 GLU C 473 ASP C 474 141.20 REMARK 500 ASN D 311 ILE D 312 -125.51 REMARK 500 ASP D 403 VAL D 404 149.89 REMARK 500 GLY D 442 LEU D 443 -143.40 REMARK 500 GLN D 469 LEU D 470 143.63 REMARK 500 GLU D 473 ASP D 474 141.91 DBREF 2G2J A 307 483 UNP Q9UHL0 DDX25_HUMAN 307 483 DBREF 2G2J B 307 483 UNP Q9UHL0 DDX25_HUMAN 307 483 DBREF 2G2J C 307 483 UNP Q9UHL0 DDX25_HUMAN 307 483 DBREF 2G2J D 307 483 UNP Q9UHL0 DDX25_HUMAN 307 483 SEQADV 2G2J SER A 305 UNP Q9UHL0 CLONING ARTIFACT SEQADV 2G2J MET A 306 UNP Q9UHL0 CLONING ARTIFACT SEQADV 2G2J SER B 305 UNP Q9UHL0 CLONING ARTIFACT SEQADV 2G2J MET B 306 UNP Q9UHL0 CLONING ARTIFACT SEQADV 2G2J SER C 305 UNP Q9UHL0 CLONING ARTIFACT SEQADV 2G2J MET C 306 UNP Q9UHL0 CLONING ARTIFACT SEQADV 2G2J SER D 305 UNP Q9UHL0 CLONING ARTIFACT SEQADV 2G2J MET D 306 UNP Q9UHL0 CLONING ARTIFACT SEQRES 1 A 179 SER MET LEU THR LEU ASN ASN ILE ARG GLN TYR TYR VAL SEQRES 2 A 179 LEU CYS GLU HIS ARG LYS ASP LYS TYR GLN ALA LEU CYS SEQRES 3 A 179 ASN ILE TYR GLY SER ILE THR ILE GLY GLN ALA ILE ILE SEQRES 4 A 179 PHE CYS GLN THR ARG ARG ASN ALA LYS TRP LEU THR VAL SEQRES 5 A 179 GLU MET ILE GLN ASP GLY HIS GLN VAL SER LEU LEU SER SEQRES 6 A 179 GLY GLU LEU THR VAL GLU GLN ARG ALA SER ILE ILE GLN SEQRES 7 A 179 ARG PHE ARG ASP GLY LYS GLU LYS VAL LEU ILE THR THR SEQRES 8 A 179 ASN VAL CYS ALA ARG GLY ILE ASP VAL LYS GLN VAL THR SEQRES 9 A 179 ILE VAL VAL ASN PHE ASP LEU PRO VAL LYS GLN GLY GLU SEQRES 10 A 179 GLU PRO ASP TYR GLU THR TYR LEU HIS ARG ILE GLY ARG SEQRES 11 A 179 THR GLY ARG PHE GLY LYS LYS GLY LEU ALA PHE ASN MET SEQRES 12 A 179 ILE GLU VAL ASP GLU LEU PRO SER LEU MET LYS ILE GLN SEQRES 13 A 179 ASP HIS PHE ASN SER SER ILE LYS GLN LEU ASN ALA GLU SEQRES 14 A 179 ASP MET ASP GLU ILE GLU LYS ILE ASP TYR SEQRES 1 B 179 SER MET LEU THR LEU ASN ASN ILE ARG GLN TYR TYR VAL SEQRES 2 B 179 LEU CYS GLU HIS ARG LYS ASP LYS TYR GLN ALA LEU CYS SEQRES 3 B 179 ASN ILE TYR GLY SER ILE THR ILE GLY GLN ALA ILE ILE SEQRES 4 B 179 PHE CYS GLN THR ARG ARG ASN ALA LYS TRP LEU THR VAL SEQRES 5 B 179 GLU MET ILE GLN ASP GLY HIS GLN VAL SER LEU LEU SER SEQRES 6 B 179 GLY GLU LEU THR VAL GLU GLN ARG ALA SER ILE ILE GLN SEQRES 7 B 179 ARG PHE ARG ASP GLY LYS GLU LYS VAL LEU ILE THR THR SEQRES 8 B 179 ASN VAL CYS ALA ARG GLY ILE ASP VAL LYS GLN VAL THR SEQRES 9 B 179 ILE VAL VAL ASN PHE ASP LEU PRO VAL LYS GLN GLY GLU SEQRES 10 B 179 GLU PRO ASP TYR GLU THR TYR LEU HIS ARG ILE GLY ARG SEQRES 11 B 179 THR GLY ARG PHE GLY LYS LYS GLY LEU ALA PHE ASN MET SEQRES 12 B 179 ILE GLU VAL ASP GLU LEU PRO SER LEU MET LYS ILE GLN SEQRES 13 B 179 ASP HIS PHE ASN SER SER ILE LYS GLN LEU ASN ALA GLU SEQRES 14 B 179 ASP MET ASP GLU ILE GLU LYS ILE ASP TYR SEQRES 1 C 179 SER MET LEU THR LEU ASN ASN ILE ARG GLN TYR TYR VAL SEQRES 2 C 179 LEU CYS GLU HIS ARG LYS ASP LYS TYR GLN ALA LEU CYS SEQRES 3 C 179 ASN ILE TYR GLY SER ILE THR ILE GLY GLN ALA ILE ILE SEQRES 4 C 179 PHE CYS GLN THR ARG ARG ASN ALA LYS TRP LEU THR VAL SEQRES 5 C 179 GLU MET ILE GLN ASP GLY HIS GLN VAL SER LEU LEU SER SEQRES 6 C 179 GLY GLU LEU THR VAL GLU GLN ARG ALA SER ILE ILE GLN SEQRES 7 C 179 ARG PHE ARG ASP GLY LYS GLU LYS VAL LEU ILE THR THR SEQRES 8 C 179 ASN VAL CYS ALA ARG GLY ILE ASP VAL LYS GLN VAL THR SEQRES 9 C 179 ILE VAL VAL ASN PHE ASP LEU PRO VAL LYS GLN GLY GLU SEQRES 10 C 179 GLU PRO ASP TYR GLU THR TYR LEU HIS ARG ILE GLY ARG SEQRES 11 C 179 THR GLY ARG PHE GLY LYS LYS GLY LEU ALA PHE ASN MET SEQRES 12 C 179 ILE GLU VAL ASP GLU LEU PRO SER LEU MET LYS ILE GLN SEQRES 13 C 179 ASP HIS PHE ASN SER SER ILE LYS GLN LEU ASN ALA GLU SEQRES 14 C 179 ASP MET ASP GLU ILE GLU LYS ILE ASP TYR SEQRES 1 D 179 SER MET LEU THR LEU ASN ASN ILE ARG GLN TYR TYR VAL SEQRES 2 D 179 LEU CYS GLU HIS ARG LYS ASP LYS TYR GLN ALA LEU CYS SEQRES 3 D 179 ASN ILE TYR GLY SER ILE THR ILE GLY GLN ALA ILE ILE SEQRES 4 D 179 PHE CYS GLN THR ARG ARG ASN ALA LYS TRP LEU THR VAL SEQRES 5 D 179 GLU MET ILE GLN ASP GLY HIS GLN VAL SER LEU LEU SER SEQRES 6 D 179 GLY GLU LEU THR VAL GLU GLN ARG ALA SER ILE ILE GLN SEQRES 7 D 179 ARG PHE ARG ASP GLY LYS GLU LYS VAL LEU ILE THR THR SEQRES 8 D 179 ASN VAL CYS ALA ARG GLY ILE ASP VAL LYS GLN VAL THR SEQRES 9 D 179 ILE VAL VAL ASN PHE ASP LEU PRO VAL LYS GLN GLY GLU SEQRES 10 D 179 GLU PRO ASP TYR GLU THR TYR LEU HIS ARG ILE GLY ARG SEQRES 11 D 179 THR GLY ARG PHE GLY LYS LYS GLY LEU ALA PHE ASN MET SEQRES 12 D 179 ILE GLU VAL ASP GLU LEU PRO SER LEU MET LYS ILE GLN SEQRES 13 D 179 ASP HIS PHE ASN SER SER ILE LYS GLN LEU ASN ALA GLU SEQRES 14 D 179 ASP MET ASP GLU ILE GLU LYS ILE ASP TYR HET SO4 151 5 HET SO4 152 5 HET SO4 153 5 HET SO4 154 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *48(H2 O) HELIX 1 1 HIS A 321 SER A 335 1 15 HELIX 2 2 THR A 347 GLN A 360 1 14 HELIX 3 3 THR A 373 ASP A 386 1 14 HELIX 4 4 ASP A 424 GLY A 433 1 10 HELIX 5 5 GLU A 449 ASP A 451 5 3 HELIX 6 6 GLU A 452 ASN A 464 1 13 HELIX 7 7 HIS B 321 SER B 335 1 15 HELIX 8 8 THR B 347 GLN B 360 1 14 HELIX 9 9 THR B 373 ASP B 386 1 14 HELIX 10 10 ASP B 424 GLY B 433 1 10 HELIX 11 11 GLU B 449 ASP B 451 5 3 HELIX 12 12 GLU B 452 ASN B 464 1 13 HELIX 13 13 HIS C 321 SER C 335 1 15 HELIX 14 14 THR C 347 ASP C 361 1 15 HELIX 15 15 THR C 373 ASP C 386 1 14 HELIX 16 16 ASP C 424 GLY C 433 1 10 HELIX 17 17 GLU C 449 ASP C 451 5 3 HELIX 18 18 GLU C 452 ASN C 464 1 13 HELIX 19 19 HIS D 321 ILE D 336 1 16 HELIX 20 20 THR D 347 GLN D 360 1 14 HELIX 21 21 THR D 373 ASP D 386 1 14 HELIX 22 22 ASP D 424 GLY D 433 1 10 HELIX 23 23 GLU D 449 ASP D 451 5 3 HELIX 24 24 GLU D 452 ASN D 464 1 13 SHEET 1 A 7 VAL A 365 LEU A 368 0 SHEET 2 A 7 VAL A 391 THR A 394 1 O ILE A 393 N LEU A 368 SHEET 3 A 7 ALA A 341 PHE A 344 1 N ILE A 343 O LEU A 392 SHEET 4 A 7 ILE A 409 ASN A 412 1 O VAL A 411 N PHE A 344 SHEET 5 A 7 LEU A 443 ILE A 448 1 O MET A 447 N ASN A 412 SHEET 6 A 7 ARG A 313 LEU A 318 1 N TYR A 315 O ASN A 446 SHEET 7 A 7 LYS A 468 GLN A 469 1 O LYS A 468 N TYR A 316 SHEET 1 B 7 VAL B 365 LEU B 368 0 SHEET 2 B 7 VAL B 391 THR B 394 1 O ILE B 393 N LEU B 368 SHEET 3 B 7 ALA B 341 PHE B 344 1 N ILE B 343 O LEU B 392 SHEET 4 B 7 ILE B 409 ASN B 412 1 O VAL B 411 N PHE B 344 SHEET 5 B 7 LEU B 443 ILE B 448 1 O MET B 447 N ASN B 412 SHEET 6 B 7 ARG B 313 LEU B 318 1 N TYR B 315 O ASN B 446 SHEET 7 B 7 ILE B 467 GLN B 469 1 O LYS B 468 N TYR B 316 SHEET 1 C 7 VAL C 365 LEU C 368 0 SHEET 2 C 7 VAL C 391 THR C 394 1 O ILE C 393 N LEU C 368 SHEET 3 C 7 ALA C 341 PHE C 344 1 N ILE C 343 O LEU C 392 SHEET 4 C 7 ILE C 409 ASN C 412 1 O VAL C 411 N PHE C 344 SHEET 5 C 7 LEU C 443 ILE C 448 1 O MET C 447 N ASN C 412 SHEET 6 C 7 ARG C 313 LEU C 318 1 N TYR C 315 O ALA C 444 SHEET 7 C 7 ILE C 467 GLN C 469 1 O LYS C 468 N TYR C 316 SHEET 1 D 7 VAL D 365 LEU D 368 0 SHEET 2 D 7 VAL D 391 THR D 394 1 O ILE D 393 N LEU D 368 SHEET 3 D 7 ALA D 341 PHE D 344 1 N ILE D 343 O LEU D 392 SHEET 4 D 7 ILE D 409 ASN D 412 1 O VAL D 411 N PHE D 344 SHEET 5 D 7 LEU D 443 ILE D 448 1 O MET D 447 N ASN D 412 SHEET 6 D 7 ARG D 313 LEU D 318 1 N TYR D 315 O ASN D 446 SHEET 7 D 7 ILE D 467 GLN D 469 1 O LYS D 468 N TYR D 316 SSBOND 1 CYS A 398 CYS B 398 SSBOND 2 CYS C 398 CYS D 398 CRYST1 70.310 70.310 187.060 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005346 0.00000