HEADER TRANSLATION 16-FEB-06 2G2K TITLE NMR STRUCTURE OF AN N-TERMINAL FRAGMENT OF THE EUKARYOTIC INITIATION TITLE 2 FACTOR 5 (EIF5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT, RESIDUES 1-170; COMPND 5 SYNONYM: EIF-5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EIF5, EIF125 FOLD, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR M.R.CONTE,G.KELLY,J.BABON,D.SANFELICE,S.J.SMERDON,C.G.PROUD REVDAT 3 10-NOV-21 2G2K 1 REMARK SEQADV REVDAT 2 24-FEB-09 2G2K 1 VERSN REVDAT 1 13-JUN-06 2G2K 0 JRNL AUTH M.R.CONTE,G.KELLY,J.BABON,D.SANFELICE,J.YOUELL,S.J.SMERDON, JRNL AUTH 2 C.G.PROUD JRNL TITL STRUCTURE OF THE EUKARYOTIC INITIATION FACTOR (EIF) 5 JRNL TITL 2 REVEALS A FOLD COMMON TO SEVERAL TRANSLATION FACTORS JRNL REF BIOCHEMISTRY V. 45 4550 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16584190 JRNL DOI 10.1021/BI052387U REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G2K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036608. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : NO ADDED SALT REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM U-15N, 13C; 20MM SODIUM REMARK 210 ACETATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE LATEST REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-18 REMARK 465 RES C SSSEQI REMARK 465 GLU A 157 REMARK 465 LYS A 158 REMARK 465 GLU A 159 REMARK 465 LYS A 160 REMARK 465 LYS A 161 REMARK 465 ASN A 162 REMARK 465 ARG A 163 REMARK 465 LYS A 164 REMARK 465 GLY A 165 REMARK 465 LYS A 166 REMARK 465 ASP A 167 REMARK 465 LYS A 168 REMARK 465 GLU A 169 REMARK 465 ASN A 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 118 H LEU A 131 1.49 REMARK 500 O THR A 34 H VAL A 76 1.58 REMARK 500 O ASN A 120 H GLY A 129 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 10 -30.71 176.80 REMARK 500 1 PHE A 13 78.99 57.80 REMARK 500 1 ARG A 15 -31.24 -178.59 REMARK 500 1 ILE A 32 105.14 168.46 REMARK 500 1 ASN A 47 -142.28 175.43 REMARK 500 1 PRO A 50 48.83 -74.58 REMARK 500 1 GLN A 64 -119.16 -105.40 REMARK 500 1 GLU A 101 -29.37 175.81 REMARK 500 1 ASN A 104 -63.06 -164.96 REMARK 500 1 LYS A 123 43.45 -84.34 REMARK 500 1 ALA A 124 -33.71 -130.82 REMARK 500 1 TYR A 127 -64.65 -10.97 REMARK 500 1 ARG A 128 92.81 24.36 REMARK 500 1 ASP A 132 -65.40 -176.81 REMARK 500 1 THR A 133 -54.46 71.59 REMARK 500 1 HIS A 134 -178.11 -177.93 REMARK 500 1 HIS A 135 86.70 -52.63 REMARK 500 1 LEU A 137 -19.17 -42.72 REMARK 500 1 SER A 149 -153.31 -151.03 REMARK 500 1 THR A 153 94.70 -65.52 REMARK 500 1 LYS A 155 -28.86 178.01 REMARK 500 2 VAL A 9 122.18 58.80 REMARK 500 2 MET A 10 131.74 66.61 REMARK 500 2 PHE A 13 72.30 46.47 REMARK 500 2 ARG A 15 22.92 -158.29 REMARK 500 2 PRO A 19 -155.83 -74.80 REMARK 500 2 ARG A 20 -67.72 -106.68 REMARK 500 2 ASN A 47 -58.34 66.73 REMARK 500 2 GLN A 64 -120.13 -112.27 REMARK 500 2 LEU A 98 90.57 33.51 REMARK 500 2 GLU A 101 -36.73 -159.22 REMARK 500 2 CYS A 102 62.62 175.01 REMARK 500 2 ASN A 104 -56.12 -29.09 REMARK 500 2 ARG A 128 92.44 29.48 REMARK 500 2 ASP A 132 -78.21 -107.25 REMARK 500 2 THR A 133 -139.45 69.87 REMARK 500 2 HIS A 135 94.82 -42.72 REMARK 500 2 ASN A 144 167.14 63.18 REMARK 500 2 GLU A 147 23.69 -150.21 REMARK 500 2 SER A 149 -59.75 66.97 REMARK 500 2 LYS A 155 -170.46 52.77 REMARK 500 3 VAL A 9 -94.91 -42.61 REMARK 500 3 MET A 10 -179.27 65.48 REMARK 500 3 PHE A 13 -68.16 -172.17 REMARK 500 3 TYR A 14 80.69 178.02 REMARK 500 3 PRO A 19 -155.83 -74.96 REMARK 500 3 ARG A 20 20.43 -149.13 REMARK 500 3 ILE A 32 88.14 -153.67 REMARK 500 3 ASN A 47 -64.55 65.43 REMARK 500 3 GLN A 64 -119.07 -107.95 REMARK 500 REMARK 500 THIS ENTRY HAS 378 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 7 0.31 SIDE CHAIN REMARK 500 1 ARG A 15 0.31 SIDE CHAIN REMARK 500 1 ARG A 20 0.29 SIDE CHAIN REMARK 500 1 ARG A 48 0.26 SIDE CHAIN REMARK 500 1 ARG A 73 0.31 SIDE CHAIN REMARK 500 1 ARG A 128 0.12 SIDE CHAIN REMARK 500 2 ARG A 7 0.28 SIDE CHAIN REMARK 500 2 ARG A 15 0.20 SIDE CHAIN REMARK 500 2 ARG A 20 0.08 SIDE CHAIN REMARK 500 2 ARG A 48 0.18 SIDE CHAIN REMARK 500 2 ARG A 73 0.08 SIDE CHAIN REMARK 500 2 ARG A 128 0.22 SIDE CHAIN REMARK 500 3 ARG A 7 0.22 SIDE CHAIN REMARK 500 3 ARG A 15 0.08 SIDE CHAIN REMARK 500 3 ARG A 20 0.21 SIDE CHAIN REMARK 500 3 ARG A 48 0.23 SIDE CHAIN REMARK 500 3 ARG A 73 0.28 SIDE CHAIN REMARK 500 3 ARG A 128 0.27 SIDE CHAIN REMARK 500 4 ARG A 7 0.15 SIDE CHAIN REMARK 500 4 ARG A 15 0.28 SIDE CHAIN REMARK 500 4 ARG A 20 0.21 SIDE CHAIN REMARK 500 4 ARG A 48 0.32 SIDE CHAIN REMARK 500 4 ARG A 73 0.29 SIDE CHAIN REMARK 500 4 ARG A 128 0.15 SIDE CHAIN REMARK 500 5 ARG A 7 0.08 SIDE CHAIN REMARK 500 5 ARG A 15 0.27 SIDE CHAIN REMARK 500 5 ARG A 20 0.29 SIDE CHAIN REMARK 500 5 ARG A 48 0.32 SIDE CHAIN REMARK 500 5 ARG A 73 0.26 SIDE CHAIN REMARK 500 5 ARG A 128 0.29 SIDE CHAIN REMARK 500 6 ARG A 7 0.17 SIDE CHAIN REMARK 500 6 ARG A 15 0.31 SIDE CHAIN REMARK 500 6 ARG A 20 0.13 SIDE CHAIN REMARK 500 6 ARG A 48 0.29 SIDE CHAIN REMARK 500 6 ARG A 73 0.32 SIDE CHAIN REMARK 500 6 ARG A 128 0.30 SIDE CHAIN REMARK 500 7 ARG A 7 0.19 SIDE CHAIN REMARK 500 7 ARG A 15 0.28 SIDE CHAIN REMARK 500 7 ARG A 20 0.24 SIDE CHAIN REMARK 500 7 ARG A 48 0.17 SIDE CHAIN REMARK 500 7 ARG A 128 0.31 SIDE CHAIN REMARK 500 8 ARG A 7 0.21 SIDE CHAIN REMARK 500 8 ARG A 15 0.29 SIDE CHAIN REMARK 500 8 ARG A 20 0.21 SIDE CHAIN REMARK 500 8 ARG A 48 0.32 SIDE CHAIN REMARK 500 8 ARG A 73 0.21 SIDE CHAIN REMARK 500 8 ARG A 128 0.32 SIDE CHAIN REMARK 500 9 ARG A 7 0.22 SIDE CHAIN REMARK 500 9 ARG A 15 0.11 SIDE CHAIN REMARK 500 9 ARG A 20 0.25 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 106 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6944 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENT DBREF 2G2K A 2 170 UNP P55010 IF5_HUMAN 2 170 SEQADV 2G2K LEU A 1 UNP P55010 CLONING ARTIFACT SEQADV 2G2K MET A 10 UNP P55010 SER 10 ENGINEERED MUTATION SEQRES 1 A 170 LEU SER VAL ASN VAL ASN ARG SER VAL MET ASP GLN PHE SEQRES 2 A 170 TYR ARG TYR LYS MET PRO ARG LEU ILE ALA LYS VAL GLU SEQRES 3 A 170 GLY LYS GLY ASN GLY ILE LYS THR VAL ILE VAL ASN MET SEQRES 4 A 170 VAL ASP VAL ALA LYS ALA LEU ASN ARG PRO PRO THR TYR SEQRES 5 A 170 PRO THR LYS TYR PHE GLY CYS GLU LEU GLY ALA GLN THR SEQRES 6 A 170 GLN PHE ASP VAL LYS ASN ASP ARG TYR ILE VAL ASN GLY SEQRES 7 A 170 SER HIS GLU ALA ASN LYS LEU GLN ASP MET LEU ASP GLY SEQRES 8 A 170 PHE ILE LYS LYS PHE VAL LEU CYS PRO GLU CYS GLU ASN SEQRES 9 A 170 PRO GLU THR ASP LEU HIS VAL ASN PRO LYS LYS GLN THR SEQRES 10 A 170 ILE GLY ASN SER CYS LYS ALA CYS GLY TYR ARG GLY MET SEQRES 11 A 170 LEU ASP THR HIS HIS LYS LEU CYS THR PHE ILE LEU LYS SEQRES 12 A 170 ASN PRO PRO GLU ASN SER ASP SER GLY THR GLY LYS LYS SEQRES 13 A 170 GLU LYS GLU LYS LYS ASN ARG LYS GLY LYS ASP LYS GLU SEQRES 14 A 170 ASN HELIX 1 1 ASN A 38 ASN A 47 1 10 HELIX 2 2 PRO A 53 LEU A 61 1 9 HELIX 3 3 GLU A 81 LEU A 98 1 18 HELIX 4 4 LYS A 136 LYS A 143 1 8 SHEET 1 A 4 LYS A 24 GLU A 26 0 SHEET 2 A 4 LYS A 33 VAL A 35 -1 O VAL A 35 N LYS A 24 SHEET 3 A 4 TYR A 74 ASN A 77 -1 O VAL A 76 N THR A 34 SHEET 4 A 4 GLN A 66 PHE A 67 -1 N GLN A 66 O ILE A 75 SHEET 1 B 2 THR A 107 ASN A 112 0 SHEET 2 B 2 THR A 117 CYS A 122 -1 O SER A 121 N ASP A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1