HEADER OXIDOREDUCTASE 17-FEB-06 2G37 TITLE STRUCTURE OF THERMUS THERMOPHILUS L-PROLINE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE/DELTA-1-PYRROLINE-5-CARBOXYLATE COMPND 3 DEHYDROGENASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.5.99.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: PROLINE DEHYDROGENASE/DELTA-1-PYRROLINE-5-CARBOXYLATE SOURCE 6 DEHYDROGENASE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PKA8H KEYWDS BETA8-ALPHA8-BARREL, FLAVOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER,T.A.WHITE REVDAT 6 14-FEB-24 2G37 1 REMARK SEQADV REVDAT 5 13-JUL-11 2G37 1 VERSN REVDAT 4 24-FEB-09 2G37 1 VERSN REVDAT 3 29-MAY-07 2G37 1 JRNL REVDAT 2 20-MAR-07 2G37 1 JRNL REVDAT 1 27-FEB-07 2G37 0 JRNL AUTH T.A.WHITE,N.KRISHNAN,D.F.BECKER,J.J.TANNER JRNL TITL STRUCTURE AND KINETICS OF MONOFUNCTIONAL PROLINE JRNL TITL 2 DEHYDROGENASE FROM THERMUS THERMOPHILUS. JRNL REF J.BIOL.CHEM. V. 282 14316 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17344208 JRNL DOI 10.1074/JBC.M700912200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 46715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.805 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5044 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6848 ; 1.542 ; 2.027 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ; 5.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 237 ;29.351 ;21.814 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 857 ;15.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;17.891 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3803 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2327 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3443 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 352 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.088 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3039 ; 0.715 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4707 ; 1.112 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2457 ; 1.969 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2141 ; 3.184 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7214 8.2600 9.7188 REMARK 3 T TENSOR REMARK 3 T11: -0.1252 T22: -0.0968 REMARK 3 T33: -0.1420 T12: -0.0086 REMARK 3 T13: -0.0305 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.5209 L22: 2.4799 REMARK 3 L33: 1.0344 L12: -0.1378 REMARK 3 L13: 0.6748 L23: -0.0904 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.0805 S13: -0.1081 REMARK 3 S21: 0.0650 S22: 0.0038 S23: 0.1628 REMARK 3 S31: 0.1063 S32: -0.1121 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -5 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3142 52.0926 8.9222 REMARK 3 T TENSOR REMARK 3 T11: -0.1118 T22: -0.0893 REMARK 3 T33: -0.0438 T12: 0.0191 REMARK 3 T13: -0.0246 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.2417 L22: 2.2397 REMARK 3 L33: 1.7803 L12: -0.0938 REMARK 3 L13: 0.5021 L23: -0.2592 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.0479 S13: 0.3203 REMARK 3 S21: -0.0534 S22: -0.0557 S23: 0.1132 REMARK 3 S31: -0.2351 S32: -0.1918 S33: 0.0700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BEAMLINE OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.2LDZ REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.240 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.12 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MGCL2, 100 MM IMIDAZOLE PH 7.0, REMARK 280 16% MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.03350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.15800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.15800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.03350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 AUTHORS STATE THAT THE TRUE BIOLOGICAL UNIT REMARK 300 FOR THE PROTEIN IS NOT YET KNOWN AND AT THIS REMARK 300 TIME THEIR DATA SUPPORTS BOTH MONOMER AND DIMER IN REMARK 300 SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 ASP A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 ALA A -9 REMARK 465 SER A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 297 REMARK 465 LEU A 298 REMARK 465 LEU A 299 REMARK 465 VAL A 300 REMARK 465 LEU A 301 REMARK 465 ARG A 302 REMARK 465 SER A 303 REMARK 465 LEU A 304 REMARK 465 VAL A 305 REMARK 465 SER A 306 REMARK 465 GLY A 307 REMARK 465 MET B -19 REMARK 465 ASP B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 ALA B -9 REMARK 465 SER B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 GLU B 295 REMARK 465 ASN B 296 REMARK 465 LEU B 297 REMARK 465 LEU B 298 REMARK 465 LEU B 299 REMARK 465 VAL B 300 REMARK 465 LEU B 301 REMARK 465 ARG B 302 REMARK 465 SER B 303 REMARK 465 LEU B 304 REMARK 465 VAL B 305 REMARK 465 SER B 306 REMARK 465 GLY B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 26 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 280 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 296 CG OD1 ND2 REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 293 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 294 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 135 -150.38 -97.44 REMARK 500 GLN A 157 48.21 -89.36 REMARK 500 ASP A 281 54.19 -92.87 REMARK 500 ARG A 293 107.30 -161.44 REMARK 500 PRO A 294 -4.53 -25.00 REMARK 500 GLU A 295 -132.57 56.23 REMARK 500 GLU B 135 -148.65 -92.61 REMARK 500 GLN B 157 43.41 -80.54 REMARK 500 ASP B 281 40.70 -98.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 294 GLU A 295 149.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 374 DBREF 2G37 A 1 307 GB 46199516 YP_005183 1 307 DBREF 2G37 B 1 307 GB 46199516 YP_005183 1 307 SEQADV 2G37 MET A -19 GB 46199516 CLONING ARTIFACT SEQADV 2G37 ASP A -18 GB 46199516 CLONING ARTIFACT SEQADV 2G37 HIS A -17 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS A -16 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS A -15 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS A -14 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS A -13 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS A -12 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS A -11 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS A -10 GB 46199516 EXPRESSION TAG SEQADV 2G37 ALA A -9 GB 46199516 CLONING ARTIFACT SEQADV 2G37 SER A -8 GB 46199516 CLONING ARTIFACT SEQADV 2G37 GLU A -7 GB 46199516 CLONING ARTIFACT SEQADV 2G37 ASN A -6 GB 46199516 CLONING ARTIFACT SEQADV 2G37 LEU A -5 GB 46199516 CLONING ARTIFACT SEQADV 2G37 TYR A -4 GB 46199516 CLONING ARTIFACT SEQADV 2G37 PHE A -3 GB 46199516 CLONING ARTIFACT SEQADV 2G37 GLN A -2 GB 46199516 CLONING ARTIFACT SEQADV 2G37 GLY A -1 GB 46199516 CLONING ARTIFACT SEQADV 2G37 HIS A 0 GB 46199516 CLONING ARTIFACT SEQADV 2G37 MET B -19 GB 46199516 CLONING ARTIFACT SEQADV 2G37 ASP B -18 GB 46199516 CLONING ARTIFACT SEQADV 2G37 HIS B -17 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS B -16 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS B -15 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS B -14 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS B -13 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS B -12 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS B -11 GB 46199516 EXPRESSION TAG SEQADV 2G37 HIS B -10 GB 46199516 EXPRESSION TAG SEQADV 2G37 ALA B -9 GB 46199516 CLONING ARTIFACT SEQADV 2G37 SER B -8 GB 46199516 CLONING ARTIFACT SEQADV 2G37 GLU B -7 GB 46199516 CLONING ARTIFACT SEQADV 2G37 ASN B -6 GB 46199516 CLONING ARTIFACT SEQADV 2G37 LEU B -5 GB 46199516 CLONING ARTIFACT SEQADV 2G37 TYR B -4 GB 46199516 CLONING ARTIFACT SEQADV 2G37 PHE B -3 GB 46199516 CLONING ARTIFACT SEQADV 2G37 GLN B -2 GB 46199516 CLONING ARTIFACT SEQADV 2G37 GLY B -1 GB 46199516 CLONING ARTIFACT SEQADV 2G37 HIS B 0 GB 46199516 CLONING ARTIFACT SEQRES 1 A 327 MET ASP HIS HIS HIS HIS HIS HIS HIS HIS ALA SER GLU SEQRES 2 A 327 ASN LEU TYR PHE GLN GLY HIS MET ASN LEU ASP LEU ALA SEQRES 3 A 327 TYR ARG SER PHE VAL LEU GLY VAL ALA GLY HIS PRO GLN SEQRES 4 A 327 VAL GLU ARG LEU ILE LYS HIS ARG ALA LYS GLY LEU VAL SEQRES 5 A 327 ARG ARG TYR VAL ALA GLY GLU THR LEU GLU GLU ALA LEU SEQRES 6 A 327 LYS ALA ALA GLU ALA LEU GLU ARG GLU GLY VAL HIS ALA SEQRES 7 A 327 ILE LEU ASP LEU LEU GLY GLU MET VAL ARG THR GLU GLU SEQRES 8 A 327 GLU ALA ARG ALA PHE GLN ARG GLY LEU LEU GLU LEU VAL SEQRES 9 A 327 TRP ALA LEU ALA GLY LYS PRO TRP PRO LYS TYR ILE SER SEQRES 10 A 327 LEU LYS LEU THR GLN LEU GLY LEU ASP LEU SER GLU ASP SEQRES 11 A 327 LEU ALA LEU ALA LEU LEU ARG GLU VAL LEU ARG GLU ALA SEQRES 12 A 327 GLU PRO ARG GLY VAL PHE VAL ARG LEU ASP MET GLU ASP SEQRES 13 A 327 SER PRO ARG VAL GLU ALA THR LEU ARG LEU TYR ARG ALA SEQRES 14 A 327 LEU ARG GLU GLU GLY PHE SER GLN VAL GLY ILE VAL LEU SEQRES 15 A 327 GLN SER TYR LEU TYR ARG THR GLU LYS ASP LEU LEU ASP SEQRES 16 A 327 LEU LEU PRO TYR ARG PRO ASN LEU ARG LEU VAL LYS GLY SEQRES 17 A 327 ALA TYR ARG GLU PRO LYS GLU VAL ALA PHE PRO ASP LYS SEQRES 18 A 327 ARG LEU ILE ASP ALA GLU TYR LEU HIS LEU GLY LYS LEU SEQRES 19 A 327 ALA LEU LYS GLU GLY LEU TYR VAL ALA PHE ALA THR HIS SEQRES 20 A 327 ASP PRO ARG ILE ILE ALA GLU LEU LYS ARG TYR THR GLU SEQRES 21 A 327 ALA MET GLY ILE PRO ARG SER ARG PHE GLU PHE GLN PHE SEQRES 22 A 327 LEU TYR GLY VAL ARG PRO GLU GLU GLN ARG ARG LEU ALA SEQRES 23 A 327 ARG GLU GLY TYR THR VAL ARG ALA TYR VAL PRO TYR GLY SEQRES 24 A 327 ARG ASP TRP TYR PRO TYR LEU THR ARG ARG ILE ALA GLU SEQRES 25 A 327 ARG PRO GLU ASN LEU LEU LEU VAL LEU ARG SER LEU VAL SEQRES 26 A 327 SER GLY SEQRES 1 B 327 MET ASP HIS HIS HIS HIS HIS HIS HIS HIS ALA SER GLU SEQRES 2 B 327 ASN LEU TYR PHE GLN GLY HIS MET ASN LEU ASP LEU ALA SEQRES 3 B 327 TYR ARG SER PHE VAL LEU GLY VAL ALA GLY HIS PRO GLN SEQRES 4 B 327 VAL GLU ARG LEU ILE LYS HIS ARG ALA LYS GLY LEU VAL SEQRES 5 B 327 ARG ARG TYR VAL ALA GLY GLU THR LEU GLU GLU ALA LEU SEQRES 6 B 327 LYS ALA ALA GLU ALA LEU GLU ARG GLU GLY VAL HIS ALA SEQRES 7 B 327 ILE LEU ASP LEU LEU GLY GLU MET VAL ARG THR GLU GLU SEQRES 8 B 327 GLU ALA ARG ALA PHE GLN ARG GLY LEU LEU GLU LEU VAL SEQRES 9 B 327 TRP ALA LEU ALA GLY LYS PRO TRP PRO LYS TYR ILE SER SEQRES 10 B 327 LEU LYS LEU THR GLN LEU GLY LEU ASP LEU SER GLU ASP SEQRES 11 B 327 LEU ALA LEU ALA LEU LEU ARG GLU VAL LEU ARG GLU ALA SEQRES 12 B 327 GLU PRO ARG GLY VAL PHE VAL ARG LEU ASP MET GLU ASP SEQRES 13 B 327 SER PRO ARG VAL GLU ALA THR LEU ARG LEU TYR ARG ALA SEQRES 14 B 327 LEU ARG GLU GLU GLY PHE SER GLN VAL GLY ILE VAL LEU SEQRES 15 B 327 GLN SER TYR LEU TYR ARG THR GLU LYS ASP LEU LEU ASP SEQRES 16 B 327 LEU LEU PRO TYR ARG PRO ASN LEU ARG LEU VAL LYS GLY SEQRES 17 B 327 ALA TYR ARG GLU PRO LYS GLU VAL ALA PHE PRO ASP LYS SEQRES 18 B 327 ARG LEU ILE ASP ALA GLU TYR LEU HIS LEU GLY LYS LEU SEQRES 19 B 327 ALA LEU LYS GLU GLY LEU TYR VAL ALA PHE ALA THR HIS SEQRES 20 B 327 ASP PRO ARG ILE ILE ALA GLU LEU LYS ARG TYR THR GLU SEQRES 21 B 327 ALA MET GLY ILE PRO ARG SER ARG PHE GLU PHE GLN PHE SEQRES 22 B 327 LEU TYR GLY VAL ARG PRO GLU GLU GLN ARG ARG LEU ALA SEQRES 23 B 327 ARG GLU GLY TYR THR VAL ARG ALA TYR VAL PRO TYR GLY SEQRES 24 B 327 ARG ASP TRP TYR PRO TYR LEU THR ARG ARG ILE ALA GLU SEQRES 25 B 327 ARG PRO GLU ASN LEU LEU LEU VAL LEU ARG SER LEU VAL SEQRES 26 B 327 SER GLY HET FAD A2001 53 HET MPD A 373 8 HET MPD A 374 8 HET FAD B2002 53 HET MPD B 371 8 HET MPD B 372 8 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 MPD 4(C6 H14 O2) FORMUL 9 HOH *250(H2 O) HELIX 1 1 LEU A 5 GLY A 16 1 12 HELIX 2 2 HIS A 17 ALA A 28 1 12 HELIX 3 3 ALA A 28 VAL A 36 1 9 HELIX 4 4 THR A 40 GLU A 54 1 15 HELIX 5 5 THR A 69 ALA A 88 1 20 HELIX 6 6 LYS A 99 GLY A 104 5 6 HELIX 7 7 SER A 108 GLU A 124 1 17 HELIX 8 8 ASP A 136 PRO A 138 5 3 HELIX 9 9 ARG A 139 GLU A 153 1 15 HELIX 10 10 ARG A 168 LEU A 177 1 10 HELIX 11 11 PRO A 178 ARG A 180 5 3 HELIX 12 12 ASP A 200 GLU A 218 1 19 HELIX 13 13 ASP A 228 MET A 242 1 15 HELIX 14 14 PRO A 245 SER A 247 5 3 HELIX 15 15 ARG A 258 GLU A 268 1 11 HELIX 16 16 TRP A 282 GLU A 292 1 11 HELIX 17 17 ASN B 2 GLY B 16 1 15 HELIX 18 18 HIS B 17 ALA B 28 1 12 HELIX 19 19 ALA B 28 ARG B 34 1 7 HELIX 20 20 THR B 40 GLU B 54 1 15 HELIX 21 21 THR B 69 ALA B 88 1 20 HELIX 22 22 LYS B 99 GLY B 104 5 6 HELIX 23 23 SER B 108 GLU B 124 1 17 HELIX 24 24 ASP B 136 PRO B 138 5 3 HELIX 25 25 ARG B 139 GLU B 153 1 15 HELIX 26 26 ARG B 168 LEU B 177 1 10 HELIX 27 27 PRO B 178 ARG B 180 5 3 HELIX 28 28 ASP B 200 GLU B 218 1 19 HELIX 29 29 ASP B 228 MET B 242 1 15 HELIX 30 30 PRO B 245 SER B 247 5 3 HELIX 31 31 ARG B 258 GLU B 268 1 11 HELIX 32 32 ASP B 281 ALA B 291 1 11 SHEET 1 A 9 HIS A 57 LEU A 63 0 SHEET 2 A 9 LYS A 94 LEU A 98 1 O TYR A 95 N LEU A 60 SHEET 3 A 9 VAL A 128 LEU A 132 1 O PHE A 129 N LYS A 94 SHEET 4 A 9 VAL A 158 GLN A 163 1 O GLY A 159 N LEU A 132 SHEET 5 A 9 LEU A 183 VAL A 186 1 O VAL A 186 N LEU A 162 SHEET 6 A 9 VAL A 222 ALA A 225 1 O ALA A 223 N LEU A 183 SHEET 7 A 9 PHE A 249 LEU A 254 1 O GLU A 250 N PHE A 224 SHEET 8 A 9 VAL A 272 GLY A 279 1 O TYR A 275 N PHE A 253 SHEET 9 A 9 HIS A 57 LEU A 63 1 N ILE A 59 O VAL A 276 SHEET 1 B 2 TYR B -4 PHE B -3 0 SHEET 2 B 2 HIS B 0 MET B 1 -1 O HIS B 0 N PHE B -3 SHEET 1 C 9 HIS B 57 LEU B 62 0 SHEET 2 C 9 LYS B 94 LEU B 98 1 O TYR B 95 N LEU B 60 SHEET 3 C 9 VAL B 128 LEU B 132 1 O ARG B 131 N ILE B 96 SHEET 4 C 9 VAL B 158 GLN B 163 1 O GLY B 159 N LEU B 132 SHEET 5 C 9 LEU B 183 VAL B 186 1 O ARG B 184 N LEU B 162 SHEET 6 C 9 VAL B 222 ALA B 225 1 O ALA B 223 N LEU B 183 SHEET 7 C 9 PHE B 249 LEU B 254 1 O GLU B 250 N PHE B 224 SHEET 8 C 9 VAL B 272 TYR B 278 1 O TYR B 275 N PHE B 253 SHEET 9 C 9 HIS B 57 LEU B 62 1 N ILE B 59 O VAL B 276 SITE 1 AC1 23 ASP A 133 MET A 134 VAL A 161 GLN A 163 SITE 2 AC1 23 ARG A 184 VAL A 186 LYS A 187 GLY A 188 SITE 3 AC1 23 ALA A 189 TYR A 190 LYS A 201 ALA A 225 SITE 4 AC1 23 THR A 226 HIS A 227 ASP A 228 PRO A 229 SITE 5 AC1 23 GLN A 252 LEU A 254 VAL A 257 ARG A 258 SITE 6 AC1 23 TYR A 275 ARG A 293 HOH A2003 SITE 1 AC2 19 ASP B 133 MET B 134 VAL B 161 GLN B 163 SITE 2 AC2 19 ARG B 184 VAL B 186 LYS B 187 GLY B 188 SITE 3 AC2 19 ALA B 189 TYR B 190 ALA B 225 THR B 226 SITE 4 AC2 19 HIS B 227 ASP B 228 PRO B 229 LEU B 254 SITE 5 AC2 19 VAL B 257 TYR B 275 HOH B2003 SITE 1 AC3 5 PHE B 129 ASN B 182 TYR B 221 GLU B 250 SITE 2 AC3 5 ARG B 273 SITE 1 AC4 6 GLY A 30 ARG A 33 ARG A 34 HOH A2080 SITE 2 AC4 6 ARG B 151 PRO B 178 SITE 1 AC5 7 LYS A 94 PHE A 129 ARG A 131 ASN A 182 SITE 2 AC5 7 TYR A 221 GLU A 250 ARG A 273 SITE 1 AC6 4 ARG A 151 PRO A 178 HOH A2043 LYS B 194 CRYST1 82.067 89.590 94.316 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012180 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010600 0.00000