HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-FEB-06 2G38 TITLE A PE/PPE PROTEIN COMPLEX FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PE FAMILY PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PPE FAMILY PROTEIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2431C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 13 ORGANISM_TAXID: 83332; SOURCE 14 STRAIN: H37RV; SOURCE 15 GENE: RV2430C; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET29B(+) KEYWDS PROTEIN-PROTEIN COMPLEX, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.STRONG,M.R.SAWAYA,D.EISENBERG,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 7 14-FEB-24 2G38 1 REMARK REVDAT 6 20-OCT-21 2G38 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2G38 1 REMARK REVDAT 4 13-JUL-11 2G38 1 VERSN REVDAT 3 24-FEB-09 2G38 1 VERSN REVDAT 2 13-JUN-06 2G38 1 JRNL REVDAT 1 14-MAR-06 2G38 0 JRNL AUTH M.STRONG,M.R.SAWAYA,S.WANG,M.PHILLIPS,D.CASCIO,D.EISENBERG JRNL TITL TOWARD THE STRUCTURAL GENOMICS OF COMPLEXES: CRYSTAL JRNL TITL 2 STRUCTURE OF A PE/PPE PROTEIN COMPLEX FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 8060 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16690741 JRNL DOI 10.1073/PNAS.0602606103 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 63.4 REMARK 3 NUMBER OF REFLECTIONS : 17250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 15.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.95000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : -2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.802 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3969 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3649 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5411 ; 1.388 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8417 ; 0.983 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 3.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;36.733 ;23.608 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 634 ;15.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4449 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 811 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1012 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3646 ; 0.159 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1993 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2224 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 82 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3214 ; 2.651 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 976 ; 0.550 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3994 ; 3.227 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 2.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1417 ; 3.380 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 15 6 REMARK 3 1 C 8 C 15 6 REMARK 3 2 A 16 A 80 5 REMARK 3 2 C 16 C 80 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 387 ; 0.07 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 703 ; 0.20 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 387 ; 2.99 ; 20.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 703 ; 3.68 ; 50.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 10 6 REMARK 3 1 D 2 D 10 6 REMARK 3 2 B 11 B 49 5 REMARK 3 2 D 11 D 49 5 REMARK 3 3 B 50 B 71 6 REMARK 3 3 D 50 D 71 6 REMARK 3 4 B 72 B 112 5 REMARK 3 4 D 72 D 112 5 REMARK 3 5 B 113 B 131 6 REMARK 3 5 D 113 D 131 6 REMARK 3 6 B 132 B 166 5 REMARK 3 6 D 132 D 166 5 REMARK 3 7 B 167 B 174 6 REMARK 3 7 D 167 D 174 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 683 ; 0.10 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 B (A): 1941 ; 0.60 ; 5.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 683 ; 4.75 ; 20.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 1941 ; 6.84 ; 50.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 82 REMARK 3 RESIDUE RANGE : B 3 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0539 19.4969 93.8568 REMARK 3 T TENSOR REMARK 3 T11: -0.0812 T22: 0.0206 REMARK 3 T33: -0.0020 T12: 0.0219 REMARK 3 T13: 0.0122 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.3704 L22: 0.2476 REMARK 3 L33: 3.0777 L12: -0.1357 REMARK 3 L13: -0.9443 L23: 0.4463 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.0022 S13: 0.0180 REMARK 3 S21: 0.0575 S22: 0.0178 S23: 0.0219 REMARK 3 S31: -0.0330 S32: -0.0473 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 82 REMARK 3 RESIDUE RANGE : D 3 D 174 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1603 2.8298 118.3963 REMARK 3 T TENSOR REMARK 3 T11: 0.0027 T22: -0.0237 REMARK 3 T33: -0.0732 T12: 0.0153 REMARK 3 T13: 0.0144 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.4314 L22: 0.2484 REMARK 3 L33: 4.5786 L12: -0.1020 REMARK 3 L13: -0.7337 L23: 0.6411 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: -0.0026 S13: -0.0248 REMARK 3 S21: 0.0275 S22: -0.0113 S23: -0.0968 REMARK 3 S31: 0.3291 S32: 0.0137 S33: 0.0619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-05; 30-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.2.2; 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000; 0.97957, 0.97974, 0.9719 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 63.4 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 15.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% ISO-PROPANOL, 0.07M SODIUM REMARK 280 ACETATE, 0.14 M CALCIUM DEHYDRATE, 30% GLYCEROL, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.56250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 141.56250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO BIOLOGICAL HETERODIMERS. REMARK 300 CHAINS A AND B FORM ONE HETERODIMER. CHAINS C AND D FORM THE SECOND REMARK 300 HETERODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN B 199 LIES ON A SPECIAL POSITION. REMARK 375 MN MN D 199 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 85 REMARK 465 LYS A 86 REMARK 465 TYR A 87 REMARK 465 ALA A 88 REMARK 465 THR A 89 REMARK 465 ALA A 90 REMARK 465 GLU A 91 REMARK 465 ALA A 92 REMARK 465 ASP A 93 REMARK 465 ASN A 94 REMARK 465 ILE A 95 REMARK 465 LYS A 96 REMARK 465 THR A 97 REMARK 465 PHE A 98 REMARK 465 SER A 99 REMARK 465 MET B 1 REMARK 465 HIS B 175 REMARK 465 SER B 176 REMARK 465 THR B 177 REMARK 465 VAL B 178 REMARK 465 LEU B 179 REMARK 465 VAL B 180 REMARK 465 ALA B 181 REMARK 465 PRO B 182 REMARK 465 VAL B 183 REMARK 465 SER B 184 REMARK 465 PRO B 185 REMARK 465 SER B 186 REMARK 465 THR B 187 REMARK 465 ALA B 188 REMARK 465 SER B 189 REMARK 465 SER B 190 REMARK 465 ARG B 191 REMARK 465 THR B 192 REMARK 465 ASP B 193 REMARK 465 THR B 194 REMARK 465 LEU B 195 REMARK 465 VAL B 196 REMARK 465 PRO B 197 REMARK 465 ARG B 198 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 PHE C 3 REMARK 465 VAL C 4 REMARK 465 ILE C 5 REMARK 465 THR C 6 REMARK 465 ASN C 7 REMARK 465 ALA C 84 REMARK 465 ASP C 85 REMARK 465 LYS C 86 REMARK 465 TYR C 87 REMARK 465 ALA C 88 REMARK 465 THR C 89 REMARK 465 ALA C 90 REMARK 465 GLU C 91 REMARK 465 ALA C 92 REMARK 465 ASP C 93 REMARK 465 ASN C 94 REMARK 465 ILE C 95 REMARK 465 LYS C 96 REMARK 465 THR C 97 REMARK 465 PHE C 98 REMARK 465 SER C 99 REMARK 465 MET D 1 REMARK 465 HIS D 175 REMARK 465 SER D 176 REMARK 465 THR D 177 REMARK 465 VAL D 178 REMARK 465 LEU D 179 REMARK 465 VAL D 180 REMARK 465 ALA D 181 REMARK 465 PRO D 182 REMARK 465 VAL D 183 REMARK 465 SER D 184 REMARK 465 PRO D 185 REMARK 465 SER D 186 REMARK 465 THR D 187 REMARK 465 ALA D 188 REMARK 465 SER D 189 REMARK 465 SER D 190 REMARK 465 ARG D 191 REMARK 465 THR D 192 REMARK 465 ASP D 193 REMARK 465 THR D 194 REMARK 465 LEU D 195 REMARK 465 VAL D 196 REMARK 465 PRO D 197 REMARK 465 ARG D 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP B 56 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 56 CZ3 CH2 REMARK 470 TRP D 56 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 56 CZ3 CH2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA B 55 REMARK 475 TRP B 56 REMARK 475 ALA B 57 REMARK 475 ALA D 55 REMARK 475 TRP D 56 REMARK 475 ALA D 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 57 C GLY B 58 N -0.195 REMARK 500 ALA D 57 C GLY D 58 N 0.261 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 113 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP D 54 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 50 -91.51 -93.61 REMARK 500 LEU B 52 71.79 -101.05 REMARK 500 MET B 53 -75.62 -151.82 REMARK 500 ASP B 54 -65.81 -11.04 REMARK 500 ALA B 55 -42.33 -29.00 REMARK 500 ILE B 173 68.34 -100.17 REMARK 500 THR C 81 -72.13 -87.36 REMARK 500 ALA D 17 -75.70 -62.45 REMARK 500 LEU D 50 -84.93 -78.08 REMARK 500 ASP D 54 2.03 -67.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP B 54 -11.26 REMARK 500 ASP D 54 -22.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 199 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 148 OE2 REMARK 620 2 GLU B 148 OE2 103.4 REMARK 620 3 ASP B 152 OD2 116.2 108.7 REMARK 620 4 ASP B 152 OD2 108.7 116.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 199 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 148 OE2 REMARK 620 2 GLU D 148 OE2 108.9 REMARK 620 3 ASP D 152 OD2 107.6 111.2 REMARK 620 4 ASP D 152 OD2 111.2 107.5 110.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 199 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV2431C RELATED DB: TARGETDB REMARK 900 RELATED ID: RV2430C RELATED DB: TARGETDB DBREF 2G38 A 1 99 GB 41353703 CAE55490 1 99 DBREF 2G38 C 1 99 GB 41353703 CAE55490 1 99 DBREF 2G38 B 1 194 GB 41353702 CAE55489 1 194 DBREF 2G38 D 1 194 GB 41353702 CAE55489 1 194 SEQADV 2G38 ALA B 2 GB 41353702 HIS 2 ENGINEERED MUTATION SEQADV 2G38 LEU B 195 GB 41353702 CLONING ARTIFACT SEQADV 2G38 VAL B 196 GB 41353702 CLONING ARTIFACT SEQADV 2G38 PRO B 197 GB 41353702 CLONING ARTIFACT SEQADV 2G38 ARG B 198 GB 41353702 CLONING ARTIFACT SEQADV 2G38 ALA D 2 GB 41353702 HIS 2 ENGINEERED MUTATION SEQADV 2G38 LEU D 195 GB 41353702 CLONING ARTIFACT SEQADV 2G38 VAL D 196 GB 41353702 CLONING ARTIFACT SEQADV 2G38 PRO D 197 GB 41353702 CLONING ARTIFACT SEQADV 2G38 ARG D 198 GB 41353702 CLONING ARTIFACT SEQRES 1 A 99 MET SER PHE VAL ILE THR ASN PRO GLU ALA LEU THR VAL SEQRES 2 A 99 ALA ALA THR GLU VAL ARG ARG ILE ARG ASP ARG ALA ILE SEQRES 3 A 99 GLN SER ASP ALA GLN VAL ALA PRO MET THR THR ALA VAL SEQRES 4 A 99 ARG PRO PRO ALA ALA ASP LEU VAL SER GLU LYS ALA ALA SEQRES 5 A 99 THR PHE LEU VAL GLU TYR ALA ARG LYS TYR ARG GLN THR SEQRES 6 A 99 ILE ALA ALA ALA ALA VAL VAL LEU GLU GLU PHE ALA HIS SEQRES 7 A 99 ALA LEU THR THR GLY ALA ASP LYS TYR ALA THR ALA GLU SEQRES 8 A 99 ALA ASP ASN ILE LYS THR PHE SER SEQRES 1 B 198 MET ALA PHE GLU ALA TYR PRO PRO GLU VAL ASN SER ALA SEQRES 2 B 198 ASN ILE TYR ALA GLY PRO GLY PRO ASP SER MET LEU ALA SEQRES 3 B 198 ALA ALA ARG ALA TRP ARG SER LEU ASP VAL GLU MET THR SEQRES 4 B 198 ALA VAL GLN ARG SER PHE ASN ARG THR LEU LEU SER LEU SEQRES 5 B 198 MET ASP ALA TRP ALA GLY PRO VAL VAL MET GLN LEU MET SEQRES 6 B 198 GLU ALA ALA LYS PRO PHE VAL ARG TRP LEU THR ASP LEU SEQRES 7 B 198 CYS VAL GLN LEU SER GLU VAL GLU ARG GLN ILE HIS GLU SEQRES 8 B 198 ILE VAL ARG ALA TYR GLU TRP ALA HIS HIS ASP MET VAL SEQRES 9 B 198 PRO LEU ALA GLN ILE TYR ASN ASN ARG ALA GLU ARG GLN SEQRES 10 B 198 ILE LEU ILE ASP ASN ASN ALA LEU GLY GLN PHE THR ALA SEQRES 11 B 198 GLN ILE ALA ASP LEU ASP GLN GLU TYR ASP ASP PHE TRP SEQRES 12 B 198 ASP GLU ASP GLY GLU VAL MET ARG ASP TYR ARG LEU ARG SEQRES 13 B 198 VAL SER ASP ALA LEU SER LYS LEU THR PRO TRP LYS ALA SEQRES 14 B 198 PRO PRO PRO ILE ALA HIS SER THR VAL LEU VAL ALA PRO SEQRES 15 B 198 VAL SER PRO SER THR ALA SER SER ARG THR ASP THR LEU SEQRES 16 B 198 VAL PRO ARG SEQRES 1 C 99 MET SER PHE VAL ILE THR ASN PRO GLU ALA LEU THR VAL SEQRES 2 C 99 ALA ALA THR GLU VAL ARG ARG ILE ARG ASP ARG ALA ILE SEQRES 3 C 99 GLN SER ASP ALA GLN VAL ALA PRO MET THR THR ALA VAL SEQRES 4 C 99 ARG PRO PRO ALA ALA ASP LEU VAL SER GLU LYS ALA ALA SEQRES 5 C 99 THR PHE LEU VAL GLU TYR ALA ARG LYS TYR ARG GLN THR SEQRES 6 C 99 ILE ALA ALA ALA ALA VAL VAL LEU GLU GLU PHE ALA HIS SEQRES 7 C 99 ALA LEU THR THR GLY ALA ASP LYS TYR ALA THR ALA GLU SEQRES 8 C 99 ALA ASP ASN ILE LYS THR PHE SER SEQRES 1 D 198 MET ALA PHE GLU ALA TYR PRO PRO GLU VAL ASN SER ALA SEQRES 2 D 198 ASN ILE TYR ALA GLY PRO GLY PRO ASP SER MET LEU ALA SEQRES 3 D 198 ALA ALA ARG ALA TRP ARG SER LEU ASP VAL GLU MET THR SEQRES 4 D 198 ALA VAL GLN ARG SER PHE ASN ARG THR LEU LEU SER LEU SEQRES 5 D 198 MET ASP ALA TRP ALA GLY PRO VAL VAL MET GLN LEU MET SEQRES 6 D 198 GLU ALA ALA LYS PRO PHE VAL ARG TRP LEU THR ASP LEU SEQRES 7 D 198 CYS VAL GLN LEU SER GLU VAL GLU ARG GLN ILE HIS GLU SEQRES 8 D 198 ILE VAL ARG ALA TYR GLU TRP ALA HIS HIS ASP MET VAL SEQRES 9 D 198 PRO LEU ALA GLN ILE TYR ASN ASN ARG ALA GLU ARG GLN SEQRES 10 D 198 ILE LEU ILE ASP ASN ASN ALA LEU GLY GLN PHE THR ALA SEQRES 11 D 198 GLN ILE ALA ASP LEU ASP GLN GLU TYR ASP ASP PHE TRP SEQRES 12 D 198 ASP GLU ASP GLY GLU VAL MET ARG ASP TYR ARG LEU ARG SEQRES 13 D 198 VAL SER ASP ALA LEU SER LYS LEU THR PRO TRP LYS ALA SEQRES 14 D 198 PRO PRO PRO ILE ALA HIS SER THR VAL LEU VAL ALA PRO SEQRES 15 D 198 VAL SER PRO SER THR ALA SER SER ARG THR ASP THR LEU SEQRES 16 D 198 VAL PRO ARG HET MN B 199 1 HET MN D 199 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *72(H2 O) HELIX 1 1 PRO A 8 THR A 37 1 30 HELIX 2 2 ASP A 45 THR A 82 1 38 HELIX 3 3 PRO B 7 GLY B 18 1 12 HELIX 4 4 PRO B 21 LEU B 50 1 30 HELIX 5 5 GLY B 58 ALA B 68 1 11 HELIX 6 6 ALA B 68 MET B 103 1 36 HELIX 7 7 PRO B 105 ASN B 122 1 18 HELIX 8 8 PHE B 128 LYS B 163 1 36 HELIX 9 9 GLU C 9 THR C 37 1 29 HELIX 10 10 ASP C 45 GLY C 83 1 39 HELIX 11 11 ALA D 2 TYR D 6 5 5 HELIX 12 12 PRO D 7 GLY D 18 1 12 HELIX 13 13 PRO D 21 LEU D 50 1 30 HELIX 14 14 GLY D 58 ALA D 67 1 10 HELIX 15 15 ALA D 68 MET D 103 1 36 HELIX 16 16 PRO D 105 ASP D 121 1 17 HELIX 17 17 PHE D 128 LEU D 164 1 37 LINK OE2 GLU B 148 MN MN B 199 1555 1555 2.58 LINK OE2 GLU B 148 MN MN B 199 3555 1555 2.58 LINK OD2 ASP B 152 MN MN B 199 1555 1555 1.95 LINK OD2 ASP B 152 MN MN B 199 3555 1555 1.95 LINK OE2 GLU D 148 MN MN D 199 1555 1555 2.34 LINK OE2 GLU D 148 MN MN D 199 4556 1555 2.34 LINK OD2 ASP D 152 MN MN D 199 1555 1555 2.17 LINK OD2 ASP D 152 MN MN D 199 4556 1555 2.17 SITE 1 AC1 2 GLU B 148 ASP B 152 SITE 1 AC2 2 GLU D 148 ASP D 152 CRYST1 40.862 46.758 283.125 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003532 0.00000