HEADER VIRAL PROTEIN 27-OCT-98 2G3P TITLE STRUCTURE OF THE N-TERMINAL TWO DOMAINS OF THE INFECTIVITY TITLE 2 PROTEIN G3P OF FILAMENTOUS PHAGE FD COMPND MOL_ID: 1; COMPND 2 MOLECULE: INFECTIVITY PROTEIN G3P; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL 2-DOMAIN FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE FD; SOURCE 3 ORGANISM_TAXID: 10864; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: LAC; SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: PERIPLASM; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC119 KEYWDS INFECTION, FILAMENTOUS PHAGE, PILUS BINDING, BETA BARREL, KEYWDS 2 CONFORMATIONAL CHANGE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HOLLIGER,R.L.WILLIAMS REVDAT 2 24-FEB-09 2G3P 1 VERSN REVDAT 1 19-JUL-99 2G3P 0 JRNL AUTH P.HOLLIGER,L.RIECHMANN,R.L.WILLIAMS JRNL TITL CRYSTAL STRUCTURE OF THE TWO N-TERMINAL DOMAINS OF JRNL TITL 2 G3P FROM FILAMENTOUS PHAGE FD AT 1.9 A: EVIDENCE JRNL TITL 3 FOR CONFORMATIONAL LABILITY. JRNL REF J.MOL.BIOL. V. 288 649 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10329170 JRNL DOI 10.1006/JMBI.1999.2720 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1499 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.007 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.024 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.023 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.052 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.744 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.121 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.854 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G3P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.947 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81474 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 13.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.45000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 62.61000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.61000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 68 REMARK 465 GLY A 69 REMARK 465 GLY A 70 REMARK 465 GLY A 71 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 GLY A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 GLU A 78 REMARK 465 GLY A 79 REMARK 465 GLY A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 GLU A 83 REMARK 465 GLY A 84 REMARK 465 GLY A 85 REMARK 465 GLY A 86 REMARK 465 THR A 87 REMARK 465 LYS A 88 REMARK 465 PRO A 89 REMARK 465 HIS A 225 REMARK 465 ALA B 1 REMARK 465 GLU B 68 REMARK 465 GLY B 69 REMARK 465 GLY B 70 REMARK 465 GLY B 71 REMARK 465 SER B 72 REMARK 465 GLU B 73 REMARK 465 GLY B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 SER B 77 REMARK 465 GLU B 78 REMARK 465 GLY B 79 REMARK 465 GLY B 80 REMARK 465 GLY B 81 REMARK 465 SER B 82 REMARK 465 GLU B 83 REMARK 465 GLY B 84 REMARK 465 GLY B 85 REMARK 465 GLY B 86 REMARK 465 THR B 87 REMARK 465 LYS B 88 REMARK 465 PRO B 89 REMARK 465 HIS B 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 66 CB CG CD OE1 OE2 REMARK 470 ASN A 67 CB CG OD1 ND2 REMARK 470 PRO A 90 CB CG CD REMARK 470 GLU B 66 CB CG CD OE1 OE2 REMARK 470 ASN B 67 CB CG OD1 ND2 REMARK 470 PRO B 90 CB CG CD REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO A 90 REMARK 475 GLU A 91 REMARK 475 TYR A 92 REMARK 475 ASN A 195 REMARK 475 PRO B 90 REMARK 475 GLU B 91 REMARK 475 TYR B 92 REMARK 475 GLY B 158 REMARK 475 THR B 159 REMARK 475 ASP B 160 REMARK 475 PRO B 161 REMARK 475 VAL B 162 REMARK 475 ASP B 209 REMARK 475 HIS B 223 REMARK 475 HIS B 224 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 5 CG CD OE1 OE2 REMARK 480 GLU A 14 CD OE1 OE2 REMARK 480 LYS A 22 CE NZ REMARK 480 ASP A 94 CB CG OD1 OD2 REMARK 480 GLU A 115 CB CG CD OE1 OE2 REMARK 480 GLU A 127 CD OE1 OE2 REMARK 480 LYS A 184 CE NZ REMARK 480 GLU A 196 CG CD OE1 OE2 REMARK 480 GLU A 202 CD OE1 OE2 REMARK 480 HIS A 223 CB CG ND1 CD2 CE1 NE2 REMARK 480 HIS A 224 CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU B 14 CG CD OE1 OE2 REMARK 480 LYS B 22 CB CG CD CE NZ REMARK 480 ASP B 24 CB CG OD1 OD2 REMARK 480 GLU B 50 CD OE1 OE2 REMARK 480 GLU B 115 CG CD OE1 OE2 REMARK 480 GLU B 127 CG CD OE1 OE2 REMARK 480 ARG B 142 CD NE CZ NH1 NH2 REMARK 480 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 145 CD OE1 NE2 REMARK 480 LYS B 163 CB CG CD CE NZ REMARK 480 LYS B 184 CE NZ REMARK 480 ARG B 186 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU B 202 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 219 ND1 HIS A 223 1.86 REMARK 500 O ALA A 219 CE1 HIS A 223 1.99 REMARK 500 NH1 ARG B 144 O HOH B 307 2.08 REMARK 500 CE LYS A 22 OE1 GLU A 50 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 90 N PRO A 90 CA 0.133 REMARK 500 GLU B 50 CG GLU B 50 CD 0.217 REMARK 500 GLU B 91 C TYR B 92 N 0.330 REMARK 500 GLN B 145 CG GLN B 145 CD -0.202 REMARK 500 PRO B 161 C VAL B 162 N -0.370 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 191 CA - CB - CG ANGL. DEV. = -11.6 DEGREES REMARK 500 GLU B 91 CA - C - N ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU B 91 O - C - N ANGL. DEV. = -20.4 DEGREES REMARK 500 TYR B 92 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG B 142 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 144 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLN B 145 CB - CG - CD ANGL. DEV. = 18.0 DEGREES REMARK 500 VAL B 162 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 PRO B 161 CA - C - N ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO B 161 O - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 VAL B 162 C - N - CA ANGL. DEV. = 36.8 DEGREES REMARK 500 ARG B 186 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 SER B 208 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 LEU B 210 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 43 92.97 -8.35 REMARK 500 GLU A 50 45.37 -109.69 REMARK 500 GLU A 66 -60.74 157.40 REMARK 500 GLU A 91 -123.38 134.69 REMARK 500 TYR A 92 123.36 166.61 REMARK 500 ASN A 132 50.08 -104.21 REMARK 500 GLU A 196 -154.26 -144.05 REMARK 500 ASP A 197 -139.47 -113.20 REMARK 500 HIS A 223 -119.25 -114.38 REMARK 500 GLU B 91 -139.11 -167.45 REMARK 500 LEU B 131 -108.94 -67.06 REMARK 500 ASN B 132 63.25 -46.15 REMARK 500 THR B 159 89.80 -44.95 REMARK 500 ASP B 160 139.58 47.00 REMARK 500 VAL B 162 96.10 109.12 REMARK 500 ALA B 219 83.84 -56.63 REMARK 500 HIS B 223 47.05 82.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 91 TYR B 92 -124.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 127 0.07 SIDE_CHAIN REMARK 500 GLU B 50 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 91 -14.70 REMARK 500 GLN B 157 -18.01 REMARK 500 SER B 208 11.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 309 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH A 357 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH A 362 DISTANCE = 5.12 ANGSTROMS DBREF 2G3P A 1 217 UNP P03661 COATA_BPFD 19 235 DBREF 2G3P B 1 217 UNP P03661 COATA_BPFD 19 235 SEQRES 1 A 225 ALA GLU THR VAL GLU SER CYS LEU ALA LYS PRO HIS THR SEQRES 2 A 225 GLU ASN SER PHE THR ASN VAL TRP LYS ASP ASP LYS THR SEQRES 3 A 225 LEU ASP ARG TYR ALA ASN TYR GLU GLY CYS LEU TRP ASN SEQRES 4 A 225 ALA THR GLY VAL VAL VAL CYS THR GLY ASP GLU THR GLN SEQRES 5 A 225 CYS TYR GLY THR TRP VAL PRO ILE GLY LEU ALA ILE PRO SEQRES 6 A 225 GLU ASN GLU GLY GLY GLY SER GLU GLY GLY GLY SER GLU SEQRES 7 A 225 GLY GLY GLY SER GLU GLY GLY GLY THR LYS PRO PRO GLU SEQRES 8 A 225 TYR GLY ASP THR PRO ILE PRO GLY TYR THR TYR ILE ASN SEQRES 9 A 225 PRO LEU ASP GLY THR TYR PRO PRO GLY THR GLU GLN ASN SEQRES 10 A 225 PRO ALA ASN PRO ASN PRO SER LEU GLU GLU SER GLN PRO SEQRES 11 A 225 LEU ASN THR PHE MET PHE GLN ASN ASN ARG PHE ARG ASN SEQRES 12 A 225 ARG GLN GLY ALA LEU THR VAL TYR THR GLY THR VAL THR SEQRES 13 A 225 GLN GLY THR ASP PRO VAL LYS THR TYR TYR GLN TYR THR SEQRES 14 A 225 PRO VAL SER SER LYS ALA MET TYR ASP ALA TYR TRP ASN SEQRES 15 A 225 GLY LYS PHE ARG ASP CYS ALA PHE HIS SER GLY PHE ASN SEQRES 16 A 225 GLU ASP PRO PHE VAL CYS GLU TYR GLN GLY GLN SER SER SEQRES 17 A 225 ASP LEU PRO GLN PRO PRO VAL ASN ALA ALA ALA HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS SEQRES 1 B 225 ALA GLU THR VAL GLU SER CYS LEU ALA LYS PRO HIS THR SEQRES 2 B 225 GLU ASN SER PHE THR ASN VAL TRP LYS ASP ASP LYS THR SEQRES 3 B 225 LEU ASP ARG TYR ALA ASN TYR GLU GLY CYS LEU TRP ASN SEQRES 4 B 225 ALA THR GLY VAL VAL VAL CYS THR GLY ASP GLU THR GLN SEQRES 5 B 225 CYS TYR GLY THR TRP VAL PRO ILE GLY LEU ALA ILE PRO SEQRES 6 B 225 GLU ASN GLU GLY GLY GLY SER GLU GLY GLY GLY SER GLU SEQRES 7 B 225 GLY GLY GLY SER GLU GLY GLY GLY THR LYS PRO PRO GLU SEQRES 8 B 225 TYR GLY ASP THR PRO ILE PRO GLY TYR THR TYR ILE ASN SEQRES 9 B 225 PRO LEU ASP GLY THR TYR PRO PRO GLY THR GLU GLN ASN SEQRES 10 B 225 PRO ALA ASN PRO ASN PRO SER LEU GLU GLU SER GLN PRO SEQRES 11 B 225 LEU ASN THR PHE MET PHE GLN ASN ASN ARG PHE ARG ASN SEQRES 12 B 225 ARG GLN GLY ALA LEU THR VAL TYR THR GLY THR VAL THR SEQRES 13 B 225 GLN GLY THR ASP PRO VAL LYS THR TYR TYR GLN TYR THR SEQRES 14 B 225 PRO VAL SER SER LYS ALA MET TYR ASP ALA TYR TRP ASN SEQRES 15 B 225 GLY LYS PHE ARG ASP CYS ALA PHE HIS SER GLY PHE ASN SEQRES 16 B 225 GLU ASP PRO PHE VAL CYS GLU TYR GLN GLY GLN SER SER SEQRES 17 B 225 ASP LEU PRO GLN PRO PRO VAL ASN ALA ALA ALA HIS HIS SEQRES 18 B 225 HIS HIS HIS HIS FORMUL 3 HOH *303(H2 O) HELIX 1 1 VAL A 4 ALA A 9 1 6 HELIX 2 2 LYS A 174 TRP A 181 1 8 HELIX 3 3 ALA A 219 HIS A 222 5 4 HELIX 4 4 VAL B 4 LEU B 8 1 5 HELIX 5 5 LYS B 174 TRP B 181 1 8 SHEET 1 A 5 THR A 13 PHE A 17 0 SHEET 2 A 5 CYS A 53 TRP A 57 -1 N TRP A 57 O THR A 13 SHEET 3 A 5 VAL A 44 CYS A 46 -1 N VAL A 45 O TYR A 54 SHEET 4 A 5 ILE A 97 TYR A 102 -1 N TYR A 102 O VAL A 44 SHEET 5 A 5 SER A 207 LEU A 210 -1 N LEU A 210 O ILE A 97 SHEET 1 B 3 TYR A 30 TYR A 33 0 SHEET 2 B 3 CYS A 36 THR A 41 -1 N TRP A 38 O ALA A 31 SHEET 3 B 3 THR A 56 LEU A 62 -1 N GLY A 61 O LEU A 37 SHEET 1 C 5 SER A 124 GLU A 126 0 SHEET 2 C 5 TYR A 166 PRO A 170 -1 N TYR A 168 O SER A 124 SHEET 3 C 5 ALA A 147 TYR A 151 -1 N VAL A 150 O THR A 169 SHEET 4 C 5 ASN A 139 ARG A 144 -1 N ARG A 144 O ALA A 147 SHEET 5 C 5 THR A 133 PHE A 136 -1 N PHE A 136 O ASN A 139 SHEET 1 D 2 THR A 154 GLN A 157 0 SHEET 2 D 2 LYS A 163 TYR A 166 -1 N TYR A 165 O VAL A 155 SHEET 1 E 4 THR B 13 THR B 18 0 SHEET 2 E 4 GLN B 52 LEU B 62 -1 N TRP B 57 O THR B 13 SHEET 3 E 4 CYS B 36 THR B 41 -1 N THR B 41 O THR B 56 SHEET 4 E 4 TYR B 30 TYR B 33 -1 N TYR B 33 O CYS B 36 SHEET 1 F 3 VAL B 44 CYS B 46 0 SHEET 2 F 3 ILE B 97 TYR B 102 -1 N TYR B 102 O VAL B 44 SHEET 3 F 3 SER B 207 LEU B 210 -1 N LEU B 210 O ILE B 97 SHEET 1 G 5 SER B 124 GLU B 126 0 SHEET 2 G 5 TYR B 166 PRO B 170 -1 N TYR B 168 O SER B 124 SHEET 3 G 5 ALA B 147 TYR B 151 -1 N VAL B 150 O THR B 169 SHEET 4 G 5 ASN B 139 ARG B 144 -1 N ARG B 144 O ALA B 147 SHEET 5 G 5 THR B 133 PHE B 136 -1 N PHE B 136 O ASN B 139 SHEET 1 H 2 THR B 154 GLN B 157 0 SHEET 2 H 2 LYS B 163 TYR B 166 -1 N TYR B 165 O VAL B 155 SSBOND 1 CYS A 7 CYS A 36 1555 1555 2.04 SSBOND 2 CYS A 46 CYS A 53 1555 1555 2.03 SSBOND 3 CYS A 188 CYS A 201 1555 1555 2.04 SSBOND 4 CYS B 7 CYS B 36 1555 1555 2.03 SSBOND 5 CYS B 46 CYS B 53 1555 1555 2.04 SSBOND 6 CYS B 188 CYS B 201 1555 1555 2.04 CISPEP 1 ASP A 160 PRO A 161 0 2.26 CISPEP 2 GLN A 212 PRO A 213 0 -0.42 CISPEP 3 ASP B 160 PRO B 161 0 8.62 CISPEP 4 GLN B 212 PRO B 213 0 -0.03 CRYST1 125.220 78.250 62.740 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015939 0.00000 MTRIX1 1 -0.865487 -0.028290 -0.500131 58.73200 1 MTRIX2 1 -0.043205 -0.990468 0.130792 52.10500 1 MTRIX3 1 -0.499064 0.134807 0.856015 12.06600 1