HEADER TRANSFERASE 21-FEB-06 2G46 TITLE STRUCTURE OF VSET IN COMPLEX WITH MEK27 H3 PEPT. AND COFACTOR PRODUCT TITLE 2 SAH CAVEAT 2G46 CHIRALITY ERRORS AT SER23,ASN56,LEU62,SER216. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PBCV-1 HISTONE H3-LYS 27 METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VSET; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MEK27 H3 PEPTIDE; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM BURSARIA CHLORELLA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 10506; SOURCE 4 GENE: A612L; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS VSET STRUCTURE, HSITONE METHYLTRANSFERASE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.M.QIAN,L.ZHENG,M.M.ZHOU REVDAT 3 09-MAR-22 2G46 1 REMARK LINK REVDAT 2 24-FEB-09 2G46 1 VERSN REVDAT 1 05-DEC-06 2G46 0 JRNL AUTH C.M.QIAN,X.WANG,K.MANZUR,SACHCHIDANAND,A.FAROOQ,L.ZENG, JRNL AUTH 2 R.WANG,M.M.ZHOU JRNL TITL STRUCTURAL INSIGHTS OF THE SPECIFICITY AND CATALYSIS OF A JRNL TITL 2 VIRAL HISTONE H3 LYSINE 27 METHYLTRANSFERASE. JRNL REF J.MOL.BIOL. V. 359 86 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16603186 JRNL DOI 10.1016/J.JMB.2006.03.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, ARIA 1.2 REMARK 3 AUTHORS : BRUNGER (CNS), NIGLES M. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G46 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036665. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 300MM NACL AND 700MM UREA REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM PROTEIN WITH 2.5 MM MEK27 REMARK 210 H3 PEPT. AND 2.5MM SAH REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; HNHA; REMARK 210 HNCOCA,HNCACB,HNCOCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 13 32.19 -149.94 REMARK 500 1 TYR A 16 61.20 -115.20 REMARK 500 1 SER A 23 17.11 98.58 REMARK 500 1 GLU A 25 -165.66 -112.10 REMARK 500 1 LEU A 29 96.51 -68.27 REMARK 500 1 ASN A 40 -136.69 -64.46 REMARK 500 1 ASP A 41 -150.39 66.52 REMARK 500 1 THR A 45 -70.71 -73.83 REMARK 500 1 GLU A 48 85.20 -59.98 REMARK 500 1 ASP A 49 -69.26 -179.03 REMARK 500 1 TYR A 50 61.74 -114.33 REMARK 500 1 ASN A 56 -26.74 169.96 REMARK 500 1 MET A 57 -168.13 -167.99 REMARK 500 1 THR A 81 -167.45 -69.73 REMARK 500 1 ALA A 82 90.44 -56.53 REMARK 500 1 LEU A 84 51.40 -91.14 REMARK 500 1 LYS A 85 -80.80 -100.90 REMARK 500 1 LYS A 93 121.77 84.42 REMARK 500 1 TYR A 105 -81.30 -124.16 REMARK 500 1 ASP A 108 -167.70 -76.91 REMARK 500 1 TYR A 109 92.08 46.09 REMARK 500 1 LEU A 111 -78.62 -89.41 REMARK 500 1 SER A 112 -81.83 -176.75 REMARK 500 1 PRO A 114 64.53 -67.94 REMARK 500 1 LYS C 211 43.64 -94.72 REMARK 500 1 ALA C 213 -169.92 -103.35 REMARK 500 1 ARG C 214 -85.04 -125.55 REMARK 500 1 SER C 216 -168.03 -56.33 REMARK 500 1 ALA C 219 60.23 -166.38 REMARK 500 1 LEU B 13 32.24 -149.95 REMARK 500 1 TYR B 16 61.35 -115.17 REMARK 500 1 SER B 23 17.07 98.58 REMARK 500 1 GLU B 25 -165.65 -112.04 REMARK 500 1 LEU B 29 96.53 -68.26 REMARK 500 1 ASN B 40 -136.65 -64.46 REMARK 500 1 ASP B 41 -150.32 66.54 REMARK 500 1 THR B 45 -70.64 -73.91 REMARK 500 1 GLU B 48 85.20 -60.28 REMARK 500 1 ASP B 49 -69.24 -179.01 REMARK 500 1 TYR B 50 61.90 -114.38 REMARK 500 1 ASN B 56 -26.99 169.77 REMARK 500 1 MET B 57 -168.17 -167.80 REMARK 500 1 THR B 81 -167.35 -69.71 REMARK 500 1 ALA B 82 90.47 -56.59 REMARK 500 1 LEU B 84 51.36 -91.21 REMARK 500 1 LYS B 85 -80.77 -100.92 REMARK 500 1 ILE B 92 103.34 -59.96 REMARK 500 1 LYS B 93 121.44 84.15 REMARK 500 1 TYR B 105 -81.25 -124.12 REMARK 500 1 ASP B 108 -167.46 -76.86 REMARK 500 REMARK 500 THIS ENTRY HAS 1228 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 302 DBREF 2G46 A 1 119 GB 9632146 NP_048968 1 119 DBREF 2G46 B 1 119 GB 9632146 NP_048968 1 119 DBREF 2G46 C 201 221 PDB 2G46 2G46 201 221 DBREF 2G46 D 201 221 PDB 2G46 2G46 201 221 SEQRES 1 A 119 MET PHE ASN ASP ARG VAL ILE VAL LYS LYS SER PRO LEU SEQRES 2 A 119 GLY GLY TYR GLY VAL PHE ALA ARG LYS SER PHE GLU LYS SEQRES 3 A 119 GLY GLU LEU VAL GLU GLU CYS LEU CYS ILE VAL ARG HIS SEQRES 4 A 119 ASN ASP ASP TRP GLY THR ALA LEU GLU ASP TYR LEU PHE SEQRES 5 A 119 SER ARG LYS ASN MET SER ALA MET ALA LEU GLY PHE GLY SEQRES 6 A 119 ALA ILE PHE ASN HIS SER LYS ASP PRO ASN ALA ARG HIS SEQRES 7 A 119 GLU LEU THR ALA GLY LEU LYS ARG MET ARG ILE PHE THR SEQRES 8 A 119 ILE LYS PRO ILE ALA ILE GLY GLU GLU ILE THR ILE SER SEQRES 9 A 119 TYR GLY ASP ASP TYR TRP LEU SER ARG PRO ARG LEU THR SEQRES 10 A 119 GLN ASN SEQRES 1 C 21 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 2 C 21 ARG MLZ SER ALA PRO ALA THR GLY SEQRES 1 B 119 MET PHE ASN ASP ARG VAL ILE VAL LYS LYS SER PRO LEU SEQRES 2 B 119 GLY GLY TYR GLY VAL PHE ALA ARG LYS SER PHE GLU LYS SEQRES 3 B 119 GLY GLU LEU VAL GLU GLU CYS LEU CYS ILE VAL ARG HIS SEQRES 4 B 119 ASN ASP ASP TRP GLY THR ALA LEU GLU ASP TYR LEU PHE SEQRES 5 B 119 SER ARG LYS ASN MET SER ALA MET ALA LEU GLY PHE GLY SEQRES 6 B 119 ALA ILE PHE ASN HIS SER LYS ASP PRO ASN ALA ARG HIS SEQRES 7 B 119 GLU LEU THR ALA GLY LEU LYS ARG MET ARG ILE PHE THR SEQRES 8 B 119 ILE LYS PRO ILE ALA ILE GLY GLU GLU ILE THR ILE SER SEQRES 9 B 119 TYR GLY ASP ASP TYR TRP LEU SER ARG PRO ARG LEU THR SEQRES 10 B 119 GLN ASN SEQRES 1 D 21 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 2 D 21 ARG MLZ SER ALA PRO ALA THR GLY MODRES 2G46 MLZ C 215 LYS N-METHYL-LYSINE MODRES 2G46 MLZ D 215 LYS N-METHYL-LYSINE HET MLZ C 215 24 HET MLZ D 215 24 HET SAH A 301 45 HET SAH B 302 45 HETNAM MLZ N-METHYL-LYSINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 MLZ 2(C7 H16 N2 O2) FORMUL 5 SAH 2(C14 H20 N6 O5 S) HELIX 1 1 ASP A 41 LEU A 47 1 7 HELIX 2 2 ASP B 41 LEU B 47 1 7 SHEET 1 A 3 ILE A 7 VAL A 8 0 SHEET 2 A 3 VAL A 18 ALA A 20 -1 O PHE A 19 N ILE A 7 SHEET 3 A 3 GLU A 99 ILE A 101 -1 O GLU A 99 N ALA A 20 SHEET 1 B 3 GLU A 31 LEU A 34 0 SHEET 2 B 3 ARG A 86 PHE A 90 -1 O MET A 87 N CYS A 33 SHEET 3 B 3 ARG A 77 LEU A 80 -1 N GLU A 79 O ARG A 88 SHEET 1 C 3 ILE A 36 ARG A 38 0 SHEET 2 C 3 MET A 57 MET A 60 -1 O SER A 58 N ARG A 38 SHEET 3 C 3 LEU A 51 ARG A 54 -1 N PHE A 52 O ALA A 59 SHEET 1 D 3 ILE B 7 VAL B 8 0 SHEET 2 D 3 VAL B 18 ALA B 20 -1 O PHE B 19 N ILE B 7 SHEET 3 D 3 GLU B 99 ILE B 101 -1 O GLU B 99 N ALA B 20 SHEET 1 E 3 GLU B 31 LEU B 34 0 SHEET 2 E 3 ARG B 86 PHE B 90 -1 O MET B 87 N CYS B 33 SHEET 3 E 3 ARG B 77 LEU B 80 -1 N GLU B 79 O ARG B 88 SHEET 1 F 3 ILE B 36 ARG B 38 0 SHEET 2 F 3 MET B 57 MET B 60 -1 O SER B 58 N ARG B 38 SHEET 3 F 3 LEU B 51 ARG B 54 -1 N PHE B 52 O ALA B 59 LINK C ARG C 214 N MLZ C 215 1555 1555 1.31 LINK C MLZ C 215 N SER C 216 1555 1555 1.31 LINK C ARG D 214 N MLZ D 215 1555 1555 1.31 LINK C MLZ D 215 N SER D 216 1555 1555 1.31 CISPEP 1 LYS A 9 LYS A 10 1 0.96 CISPEP 2 LYS A 22 SER A 23 1 0.60 CISPEP 3 LYS B 9 LYS B 10 1 0.86 CISPEP 4 LYS B 22 SER B 23 1 0.75 CISPEP 5 LYS A 9 LYS A 10 2 4.79 CISPEP 6 LYS A 22 SER A 23 2 1.88 CISPEP 7 LYS B 9 LYS B 10 2 4.71 CISPEP 8 LYS B 22 SER B 23 2 1.75 CISPEP 9 LYS A 9 LYS A 10 3 1.35 CISPEP 10 LYS A 22 SER A 23 3 0.87 CISPEP 11 LYS B 9 LYS B 10 3 1.37 CISPEP 12 LYS B 22 SER B 23 3 0.96 CISPEP 13 LYS A 9 LYS A 10 4 2.41 CISPEP 14 LYS A 22 SER A 23 4 2.59 CISPEP 15 LYS B 9 LYS B 10 4 2.52 CISPEP 16 LYS B 22 SER B 23 4 2.49 CISPEP 17 LYS A 9 LYS A 10 5 0.87 CISPEP 18 LYS A 22 SER A 23 5 1.43 CISPEP 19 LYS B 9 LYS B 10 5 0.78 CISPEP 20 LYS B 22 SER B 23 5 1.28 CISPEP 21 LYS A 9 LYS A 10 6 2.98 CISPEP 22 LYS A 22 SER A 23 6 1.16 CISPEP 23 LYS B 9 LYS B 10 6 2.91 CISPEP 24 LYS B 22 SER B 23 6 1.09 CISPEP 25 LYS A 9 LYS A 10 7 1.52 CISPEP 26 LYS A 22 SER A 23 7 1.64 CISPEP 27 LYS B 9 LYS B 10 7 1.42 CISPEP 28 LYS B 22 SER B 23 7 1.59 CISPEP 29 LYS A 9 LYS A 10 8 6.07 CISPEP 30 LYS A 22 SER A 23 8 0.81 CISPEP 31 LYS B 9 LYS B 10 8 6.05 CISPEP 32 LYS B 22 SER B 23 8 0.79 CISPEP 33 LYS A 9 LYS A 10 9 6.55 CISPEP 34 LYS A 22 SER A 23 9 2.36 CISPEP 35 LYS B 9 LYS B 10 9 6.20 CISPEP 36 LYS B 22 SER B 23 9 2.21 CISPEP 37 LYS A 9 LYS A 10 10 2.08 CISPEP 38 LYS A 22 SER A 23 10 2.24 CISPEP 39 LYS B 9 LYS B 10 10 1.89 CISPEP 40 LYS B 22 SER B 23 10 2.26 CISPEP 41 LYS A 9 LYS A 10 11 4.06 CISPEP 42 LYS A 22 SER A 23 11 1.20 CISPEP 43 LYS B 9 LYS B 10 11 4.02 CISPEP 44 LYS B 22 SER B 23 11 1.16 CISPEP 45 LYS A 9 LYS A 10 12 0.17 CISPEP 46 LYS A 22 SER A 23 12 2.01 CISPEP 47 LYS B 9 LYS B 10 12 0.19 CISPEP 48 LYS B 22 SER B 23 12 2.01 CISPEP 49 LYS A 9 LYS A 10 13 0.81 CISPEP 50 LYS A 22 SER A 23 13 0.92 CISPEP 51 LYS B 9 LYS B 10 13 0.89 CISPEP 52 LYS B 22 SER B 23 13 0.90 CISPEP 53 LYS A 9 LYS A 10 14 0.19 CISPEP 54 LYS A 22 SER A 23 14 1.12 CISPEP 55 LYS B 9 LYS B 10 14 0.20 CISPEP 56 LYS B 22 SER B 23 14 1.19 CISPEP 57 LYS A 9 LYS A 10 15 4.00 CISPEP 58 LYS A 22 SER A 23 15 3.14 CISPEP 59 LYS B 9 LYS B 10 15 4.03 CISPEP 60 LYS B 22 SER B 23 15 3.06 CISPEP 61 LYS A 9 LYS A 10 16 2.13 CISPEP 62 LYS A 22 SER A 23 16 0.50 CISPEP 63 LYS B 9 LYS B 10 16 2.19 CISPEP 64 LYS B 22 SER B 23 16 0.46 CISPEP 65 LYS A 9 LYS A 10 17 1.81 CISPEP 66 LYS A 22 SER A 23 17 1.14 CISPEP 67 LYS B 9 LYS B 10 17 1.79 CISPEP 68 LYS B 22 SER B 23 17 1.11 CISPEP 69 LYS A 9 LYS A 10 18 2.43 CISPEP 70 LYS A 22 SER A 23 18 1.14 CISPEP 71 LYS B 9 LYS B 10 18 2.38 CISPEP 72 LYS B 22 SER B 23 18 1.13 CISPEP 73 LYS A 9 LYS A 10 19 1.48 CISPEP 74 LYS A 22 SER A 23 19 1.39 CISPEP 75 LYS B 9 LYS B 10 19 1.37 CISPEP 76 LYS B 22 SER B 23 19 1.44 CISPEP 77 LYS A 9 LYS A 10 20 1.73 CISPEP 78 LYS A 22 SER A 23 20 2.03 CISPEP 79 LYS B 9 LYS B 10 20 1.84 CISPEP 80 LYS B 22 SER B 23 20 1.95 SITE 1 AC1 9 TYR A 16 TYR A 50 ALA A 66 ILE A 67 SITE 2 AC1 9 ASN A 69 HIS A 70 TYR A 105 LEU A 111 SITE 3 AC1 9 MLZ C 215 SITE 1 AC2 9 TYR B 16 TYR B 50 ALA B 66 ILE B 67 SITE 2 AC2 9 ASN B 69 HIS B 70 TYR B 105 LEU B 111 SITE 3 AC2 9 MLZ D 215 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1