HEADER HYDROLASE 22-FEB-06 2G4F TITLE STRUCTURE OF S.OLIVACEOVIRIDIS XYLANASE Q88A/R275A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-302; COMPND 5 SYNONYM: XYLANASE; COMPND 6 EC: 3.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES OLIVACEOVIRIDIS; SOURCE 3 ORGANISM_TAXID: 1921; SOURCE 4 STRAIN: E-86; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A (NOVAGEN) KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DIERTAVITIAN,S.KANEKO,Z.FUJIMOTO,A.KUNO,E.JOHANSSON,L.LO LEGGIO REVDAT 5 10-NOV-21 2G4F 1 SEQADV REVDAT 4 23-MAY-18 2G4F 1 REMARK REVDAT 3 29-FEB-12 2G4F 1 JRNL VERSN REVDAT 2 24-FEB-09 2G4F 1 VERSN REVDAT 1 06-MAR-07 2G4F 0 JRNL AUTH H.ICHINOSE,S.DIERTAVITIAN,Z.FUJIMOTO,A.KUNO,L.L.LEGGIO, JRNL AUTH 2 S.KANEKO JRNL TITL STRUCTURE-BASED ENGINEERING OF GLUCOSE SPECIFICITY IN A JRNL TITL 2 FAMILY 10 XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 JRNL REF PROCESS BIOCHEM V. 47 358 2012 JRNL REFN ISSN 1359-5113 JRNL DOI 10.1016/J.PROCBIO.2011.06.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.LO LEGGIO,J.LE NOURS,C.RYTTERSGAARD,S.KANEKO,A.KUNO, REMARK 1 AUTH 2 Z.FUJIMOTO,S.DIERTAVITIAN,S.LARSEN REMARK 1 TITL STRUCTURE AND SPECIFICITY OF POLYSACCHARIDASES BELONGING TO REMARK 1 TITL 2 CLAN GH-A REMARK 1 REF BIOTECHNOLOGY OF 27 2004 REMARK 1 REF 2 LIGNOCELLULOSE DEGRADATION REMARK 1 REF 3 AND BIOMASS UTILIZATION REMARK 1 PUBL UNI PUBLISHERS CO. LTD, TOKYO REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 17686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1087 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.454 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4749 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4056 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6454 ; 1.451 ; 1.893 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9402 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 7.175 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;31.683 ;24.153 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;14.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.572 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5494 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1038 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1093 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4154 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2639 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.113 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3762 ; 0.588 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1260 ; 0.123 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4736 ; 0.713 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2146 ; 1.206 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1718 ; 1.790 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 200 1 REMARK 3 1 B 1 B 200 1 REMARK 3 2 A 202 A 258 1 REMARK 3 2 B 202 B 258 1 REMARK 3 3 A 260 A 302 1 REMARK 3 3 B 260 B 302 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 4307 ; 0.040 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 4307 ; 0.120 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.088 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15900 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50100 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM SULPHATE, 0.2M SODIUM REMARK 280 ACETATE BUFFER, 9% PEG 8000, PH 4.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.43750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.56850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.43750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.56850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS MONOMER, THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 303 REMARK 465 GLY A 304 REMARK 465 SER A 305 REMARK 465 ARG A 306 REMARK 465 SER A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 GLY B 303 REMARK 465 GLY B 304 REMARK 465 SER B 305 REMARK 465 ARG B 306 REMARK 465 SER B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 365 O HOH B 367 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 272 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 133 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 171 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 231 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 272 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -67.13 123.42 REMARK 500 ASP A 133 2.23 -68.90 REMARK 500 ARG A 145 -5.08 -59.04 REMARK 500 GLU A 236 44.26 -142.40 REMARK 500 VAL A 268 -62.78 -97.98 REMARK 500 THR A 279 70.38 27.35 REMARK 500 GLU B 2 -70.38 121.54 REMARK 500 ASP B 133 3.08 -67.61 REMARK 500 ASN B 209 -167.82 -160.21 REMARK 500 ASN B 217 0.31 -69.29 REMARK 500 VAL B 268 -62.53 -98.87 REMARK 500 THR B 279 69.82 22.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 1 GLU A 2 -48.54 REMARK 500 ALA B 1 GLU B 2 -47.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G3I RELATED DB: PDB REMARK 900 RELATED ID: 2G3J RELATED DB: PDB DBREF 2G4F A 1 302 UNP Q7SI98 Q7SI98_STROI 1 302 DBREF 2G4F B 1 302 UNP Q7SI98 Q7SI98_STROI 1 302 SEQADV 2G4F ALA A 88 UNP Q7SI98 GLN 88 ENGINEERED MUTATION SEQADV 2G4F ALA A 275 UNP Q7SI98 ARG 275 ENGINEERED MUTATION SEQADV 2G4F GLY A 303 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F GLY A 304 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F SER A 305 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F ARG A 306 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F SER A 307 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F HIS A 308 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS A 309 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS A 310 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS A 311 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS A 312 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS A 313 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F ALA B 88 UNP Q7SI98 GLN 88 ENGINEERED MUTATION SEQADV 2G4F ALA B 275 UNP Q7SI98 ARG 275 ENGINEERED MUTATION SEQADV 2G4F GLY B 303 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F GLY B 304 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F SER B 305 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F ARG B 306 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F SER B 307 UNP Q7SI98 CLONING ARTIFACT SEQADV 2G4F HIS B 308 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS B 309 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS B 310 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS B 311 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS B 312 UNP Q7SI98 EXPRESSION TAG SEQADV 2G4F HIS B 313 UNP Q7SI98 EXPRESSION TAG SEQRES 1 A 313 ALA GLU SER THR LEU GLY ALA ALA ALA ALA GLN SER GLY SEQRES 2 A 313 ARG TYR PHE GLY THR ALA ILE ALA SER GLY LYS LEU GLY SEQRES 3 A 313 ASP SER ALA TYR THR THR ILE ALA SER ARG GLU PHE ASN SEQRES 4 A 313 MET VAL THR ALA GLU ASN GLU MET LYS ILE ASP ALA THR SEQRES 5 A 313 GLU PRO GLN ARG GLY GLN PHE ASN PHE SER ALA GLY ASP SEQRES 6 A 313 ARG VAL TYR ASN TRP ALA VAL GLN ASN GLY LYS GLN VAL SEQRES 7 A 313 ARG GLY HIS THR LEU ALA TRP HIS SER ALA GLN PRO GLY SEQRES 8 A 313 TRP MET GLN SER LEU SER GLY SER THR LEU ARG GLN ALA SEQRES 9 A 313 MET ILE ASP HIS ILE ASN GLY VAL MET GLY HIS TYR LYS SEQRES 10 A 313 GLY LYS ILE ALA GLN TRP ASP VAL VAL ASN GLU ALA PHE SEQRES 11 A 313 SER ASP ASP GLY SER GLY GLY ARG ARG ASP SER ASN LEU SEQRES 12 A 313 GLN ARG THR GLY ASN ASP TRP ILE GLU VAL ALA PHE ARG SEQRES 13 A 313 THR ALA ARG ALA ALA ASP PRO ALA ALA LYS LEU CYS TYR SEQRES 14 A 313 ASN ASP TYR ASN ILE GLU ASN TRP THR TRP ALA LYS THR SEQRES 15 A 313 GLN GLY VAL TYR ASN MET VAL ARG ASP PHE LYS GLN ARG SEQRES 16 A 313 GLY VAL PRO ILE ASP CYS VAL GLY PHE GLN SER HIS PHE SEQRES 17 A 313 ASN SER GLY SER PRO TYR ASN SER ASN PHE ARG THR THR SEQRES 18 A 313 LEU GLN ASN PHE ALA ALA LEU GLY VAL ASP VAL ALA ILE SEQRES 19 A 313 THR GLU LEU ASP ILE GLN GLY ALA SER SER SER THR TYR SEQRES 20 A 313 ALA ALA VAL THR ASN ASP CYS LEU ALA VAL SER ARG CYS SEQRES 21 A 313 LEU GLY ILE THR VAL TRP GLY VAL ARG ASP THR ASP SER SEQRES 22 A 313 TRP ALA SER GLY ASP THR PRO LEU LEU PHE ASN GLY ASP SEQRES 23 A 313 GLY SER LYS LYS ALA ALA TYR THR ALA VAL LEU ASN ALA SEQRES 24 A 313 LEU ASN GLY GLY GLY SER ARG SER HIS HIS HIS HIS HIS SEQRES 25 A 313 HIS SEQRES 1 B 313 ALA GLU SER THR LEU GLY ALA ALA ALA ALA GLN SER GLY SEQRES 2 B 313 ARG TYR PHE GLY THR ALA ILE ALA SER GLY LYS LEU GLY SEQRES 3 B 313 ASP SER ALA TYR THR THR ILE ALA SER ARG GLU PHE ASN SEQRES 4 B 313 MET VAL THR ALA GLU ASN GLU MET LYS ILE ASP ALA THR SEQRES 5 B 313 GLU PRO GLN ARG GLY GLN PHE ASN PHE SER ALA GLY ASP SEQRES 6 B 313 ARG VAL TYR ASN TRP ALA VAL GLN ASN GLY LYS GLN VAL SEQRES 7 B 313 ARG GLY HIS THR LEU ALA TRP HIS SER ALA GLN PRO GLY SEQRES 8 B 313 TRP MET GLN SER LEU SER GLY SER THR LEU ARG GLN ALA SEQRES 9 B 313 MET ILE ASP HIS ILE ASN GLY VAL MET GLY HIS TYR LYS SEQRES 10 B 313 GLY LYS ILE ALA GLN TRP ASP VAL VAL ASN GLU ALA PHE SEQRES 11 B 313 SER ASP ASP GLY SER GLY GLY ARG ARG ASP SER ASN LEU SEQRES 12 B 313 GLN ARG THR GLY ASN ASP TRP ILE GLU VAL ALA PHE ARG SEQRES 13 B 313 THR ALA ARG ALA ALA ASP PRO ALA ALA LYS LEU CYS TYR SEQRES 14 B 313 ASN ASP TYR ASN ILE GLU ASN TRP THR TRP ALA LYS THR SEQRES 15 B 313 GLN GLY VAL TYR ASN MET VAL ARG ASP PHE LYS GLN ARG SEQRES 16 B 313 GLY VAL PRO ILE ASP CYS VAL GLY PHE GLN SER HIS PHE SEQRES 17 B 313 ASN SER GLY SER PRO TYR ASN SER ASN PHE ARG THR THR SEQRES 18 B 313 LEU GLN ASN PHE ALA ALA LEU GLY VAL ASP VAL ALA ILE SEQRES 19 B 313 THR GLU LEU ASP ILE GLN GLY ALA SER SER SER THR TYR SEQRES 20 B 313 ALA ALA VAL THR ASN ASP CYS LEU ALA VAL SER ARG CYS SEQRES 21 B 313 LEU GLY ILE THR VAL TRP GLY VAL ARG ASP THR ASP SER SEQRES 22 B 313 TRP ALA SER GLY ASP THR PRO LEU LEU PHE ASN GLY ASP SEQRES 23 B 313 GLY SER LYS LYS ALA ALA TYR THR ALA VAL LEU ASN ALA SEQRES 24 B 313 LEU ASN GLY GLY GLY SER ARG SER HIS HIS HIS HIS HIS SEQRES 25 B 313 HIS FORMUL 3 HOH *118(H2 O) HELIX 1 1 THR A 4 ALA A 10 1 7 HELIX 2 2 GLN A 11 GLY A 13 5 3 HELIX 3 3 ALA A 21 GLY A 26 5 6 HELIX 4 4 ASP A 27 PHE A 38 1 12 HELIX 5 5 LYS A 48 GLU A 53 1 6 HELIX 6 6 PHE A 61 ASN A 74 1 14 HELIX 7 7 PRO A 90 SER A 95 1 6 HELIX 8 8 SER A 97 TYR A 116 1 20 HELIX 9 9 LEU A 143 ASN A 148 5 6 HELIX 10 10 ASP A 149 ASP A 162 1 14 HELIX 11 11 TRP A 179 GLY A 196 1 18 HELIX 12 12 ASN A 217 ALA A 227 1 11 HELIX 13 13 SER A 243 ALA A 256 1 14 HELIX 14 14 ARG A 269 SER A 273 5 5 HELIX 15 15 ALA A 275 THR A 279 5 5 HELIX 16 16 LYS A 290 ASN A 301 1 12 HELIX 17 17 THR B 4 GLN B 11 1 8 HELIX 18 18 ALA B 21 LEU B 25 5 5 HELIX 19 19 ASP B 27 PHE B 38 1 12 HELIX 20 20 LYS B 48 GLU B 53 1 6 HELIX 21 21 PHE B 61 ASN B 74 1 14 HELIX 22 22 PRO B 90 SER B 95 1 6 HELIX 23 23 SER B 97 TYR B 116 1 20 HELIX 24 24 LEU B 143 ASN B 148 5 6 HELIX 25 25 ASP B 149 ASP B 162 1 14 HELIX 26 26 TRP B 179 GLY B 196 1 18 HELIX 27 27 ASN B 217 ALA B 227 1 11 HELIX 28 28 SER B 243 ALA B 256 1 14 HELIX 29 29 ARG B 269 SER B 273 5 5 HELIX 30 30 ALA B 275 THR B 279 5 5 HELIX 31 31 LYS B 290 ASN B 301 1 12 SHEET 1 A10 HIS A 207 PHE A 208 0 SHEET 2 A10 ASP A 231 ILE A 239 1 O ASP A 238 N PHE A 208 SHEET 3 A10 CYS A 260 VAL A 265 1 O THR A 264 N LEU A 237 SHEET 4 A10 TYR A 15 ILE A 20 1 N GLY A 17 O ILE A 263 SHEET 5 A10 MET A 40 ALA A 43 1 O THR A 42 N ILE A 20 SHEET 6 A10 GLN A 77 TRP A 85 1 O ARG A 79 N VAL A 41 SHEET 7 A10 GLN A 122 ASN A 127 1 O GLN A 122 N GLY A 80 SHEET 8 A10 LYS A 166 ASP A 171 1 O CYS A 168 N TRP A 123 SHEET 9 A10 CYS A 201 PHE A 204 1 O GLY A 203 N TYR A 169 SHEET 10 A10 ASP A 231 ILE A 239 1 O ALA A 233 N PHE A 204 SHEET 1 B10 HIS B 207 PHE B 208 0 SHEET 2 B10 ASP B 231 ILE B 239 1 O ASP B 238 N PHE B 208 SHEET 3 B10 CYS B 260 VAL B 265 1 O THR B 264 N LEU B 237 SHEET 4 B10 TYR B 15 ILE B 20 1 N GLY B 17 O ILE B 263 SHEET 5 B10 MET B 40 ALA B 43 1 O THR B 42 N ILE B 20 SHEET 6 B10 GLN B 77 TRP B 85 1 O ARG B 79 N VAL B 41 SHEET 7 B10 GLN B 122 ASN B 127 1 O GLN B 122 N GLY B 80 SHEET 8 B10 LYS B 166 ASP B 171 1 O LYS B 166 N TRP B 123 SHEET 9 B10 CYS B 201 PHE B 204 1 O GLY B 203 N TYR B 169 SHEET 10 B10 ASP B 231 ILE B 239 1 O ALA B 233 N PHE B 204 SSBOND 1 CYS A 168 CYS A 201 1555 1555 2.03 SSBOND 2 CYS A 254 CYS A 260 1555 1555 2.11 SSBOND 3 CYS B 168 CYS B 201 1555 1555 1.95 SSBOND 4 CYS B 254 CYS B 260 1555 1555 2.09 CISPEP 1 HIS A 81 THR A 82 0 4.48 CISPEP 2 HIS B 81 THR B 82 0 4.64 CRYST1 110.875 55.137 114.183 90.00 110.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009020 0.000000 0.003410 0.00000 SCALE2 0.000000 0.018140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009360 0.00000