HEADER LIGASE 23-FEB-06 2G5I TITLE STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH TITLE 2 ADP-ALF4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLU-ADT SUBUNIT A; COMPND 5 EC: 6.3.5.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT B; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ASP/GLU-ADT SUBUNIT B; COMPND 11 EC: 6.3.5.-; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT C; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: ASP/GLU-ADT SUBUNIT C; COMPND 17 EC: 6.3.5.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MU50; SOURCE 5 GENE: GATA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 13 ORGANISM_TAXID: 1280; SOURCE 14 STRAIN: MU50; SOURCE 15 GENE: GATB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 23 ORGANISM_TAXID: 1280; SOURCE 24 STRAIN: MU50; SOURCE 25 GENE: GATC; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS MULTI PROTEIN COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.NAKAMURA,M.YAO,I.TANAKA REVDAT 3 25-OCT-23 2G5I 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2G5I 1 VERSN REVDAT 1 18-JUL-06 2G5I 0 JRNL AUTH A.NAKAMURA,M.YAO,S.CHIMNARONK,N.SAKAI,I.TANAKA JRNL TITL AMMONIA CHANNEL COUPLES GLUTAMINASE WITH TRANSAMIDASE JRNL TITL 2 REACTIONS IN GATCAB JRNL REF SCIENCE V. 312 1954 2006 JRNL REFN ISSN 0036-8075 JRNL PMID 16809541 JRNL DOI 10.1126/SCIENCE.1127156 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 17609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2946 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 110 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.10000 REMARK 3 B22 (A**2) : -15.40000 REMARK 3 B33 (A**2) : 20.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.588 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17609 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : 0.27600 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2G5H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG MME 550, 0.005M MAGNESIUM REMARK 280 CHLORIDE, 0.05M HEPES-NA, PH 7.0, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.81250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.63950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.81250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.63950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ILE B 412 REMARK 465 SER B 413 REMARK 465 ASP B 414 REMARK 465 GLU B 415 REMARK 465 ALA B 416 REMARK 465 THR B 417 REMARK 465 LEU B 418 REMARK 465 LEU B 419 REMARK 465 LYS B 420 REMARK 465 PHE B 421 REMARK 465 VAL B 422 REMARK 465 ASN B 423 REMARK 465 GLU B 424 REMARK 465 ALA B 425 REMARK 465 LEU B 426 REMARK 465 ASP B 427 REMARK 465 ASN B 428 REMARK 465 ASN B 429 REMARK 465 GLU B 430 REMARK 465 GLN B 431 REMARK 465 SER B 432 REMARK 465 VAL B 433 REMARK 465 GLU B 434 REMARK 465 ASP B 435 REMARK 465 TYR B 436 REMARK 465 LYS B 437 REMARK 465 ASN B 438 REMARK 465 GLY B 439 REMARK 465 LYS B 440 REMARK 465 GLY B 441 REMARK 465 LYS B 442 REMARK 465 ALA B 443 REMARK 465 MET B 444 REMARK 465 GLY B 445 REMARK 465 PHE B 446 REMARK 465 LEU B 447 REMARK 465 VAL B 448 REMARK 465 GLY B 449 REMARK 465 GLN B 450 REMARK 465 ILE B 451 REMARK 465 MET B 452 REMARK 465 LYS B 453 REMARK 465 ALA B 454 REMARK 465 SER B 455 REMARK 465 LYS B 456 REMARK 465 GLY B 457 REMARK 465 GLN B 458 REMARK 465 ALA B 459 REMARK 465 ASN B 460 REMARK 465 PRO B 461 REMARK 465 GLN B 462 REMARK 465 LEU B 463 REMARK 465 VAL B 464 REMARK 465 ASN B 465 REMARK 465 GLN B 466 REMARK 465 LEU B 467 REMARK 465 LEU B 468 REMARK 465 LYS B 469 REMARK 465 GLN B 470 REMARK 465 GLU B 471 REMARK 465 LEU B 472 REMARK 465 ASP B 473 REMARK 465 LYS B 474 REMARK 465 ARG B 475 REMARK 465 LEU B 476 REMARK 465 GLU B 477 REMARK 465 HIS B 478 REMARK 465 HIS B 479 REMARK 465 HIS B 480 REMARK 465 HIS B 481 REMARK 465 HIS B 482 REMARK 465 HIS B 483 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 407 O HOH B 605 1.76 REMARK 500 O PRO C 22 N GLU C 24 1.96 REMARK 500 OG SER A 338 OE2 GLU C 97 1.96 REMARK 500 NH1 ARG B 259 O HOH B 635 1.98 REMARK 500 O PRO C 22 N THR C 25 2.02 REMARK 500 NH2 ARG B 259 O HOH B 635 2.07 REMARK 500 ND2 ASN B 215 OE2 GLU B 250 2.09 REMARK 500 O PHE A 127 O HOH A 502 2.10 REMARK 500 N GLU B 240 O HOH B 620 2.13 REMARK 500 OE2 GLU C 33 O HOH C 103 2.14 REMARK 500 O THR C 93 N MET C 95 2.17 REMARK 500 O ASN C 96 OXT ALA C 100 2.18 REMARK 500 O MET A 1 N ARG A 4 2.19 REMARK 500 OE2 GLU B 210 CE LYS B 212 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 87 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 GLN B 202 N - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 GLY B 238 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 ARG B 259 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP C 99 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 ALA C 100 CA - C - O ANGL. DEV. = 28.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -67.72 -24.24 REMARK 500 ARG A 4 -9.19 -48.79 REMARK 500 LEU A 44 -87.45 -127.41 REMARK 500 LYS A 64 8.14 -65.12 REMARK 500 ASP A 65 19.60 58.41 REMARK 500 GLN A 66 61.08 -104.87 REMARK 500 LEU A 71 24.21 -149.99 REMARK 500 PHE A 72 122.70 -39.07 REMARK 500 ASP A 80 17.04 -64.54 REMARK 500 LEU A 87 -94.97 -89.72 REMARK 500 GLU A 88 114.98 178.08 REMARK 500 GLU A 126 105.46 -48.35 REMARK 500 PHE A 127 19.66 80.48 REMARK 500 SER A 132 -7.44 -164.77 REMARK 500 THR A 133 -7.23 69.98 REMARK 500 SER A 136 106.11 -42.01 REMARK 500 TYR A 137 -5.27 -52.68 REMARK 500 ASP A 146 89.12 -177.48 REMARK 500 HIS A 147 -2.60 -48.02 REMARK 500 SER A 155 32.81 -96.40 REMARK 500 SER A 178 -4.15 -50.42 REMARK 500 PHE A 206 -72.49 -128.15 REMARK 500 ASP A 211 162.02 -39.76 REMARK 500 GLN A 212 129.17 175.64 REMARK 500 ASP A 245 106.16 -55.06 REMARK 500 SER A 250 -50.51 -27.68 REMARK 500 VAL A 297 -158.71 -121.35 REMARK 500 ASP A 325 15.74 -148.88 REMARK 500 GLU A 335 35.40 -61.47 REMARK 500 ALA A 336 72.38 -57.95 REMARK 500 TYR A 374 -71.96 -115.63 REMARK 500 TYR A 375 -74.65 -56.65 REMARK 500 ALA A 408 147.02 -36.02 REMARK 500 ASP A 416 46.32 -96.14 REMARK 500 ASP A 417 101.83 -164.73 REMARK 500 PHE A 460 -1.28 65.75 REMARK 500 ASP A 461 50.09 -91.89 REMARK 500 ARG A 467 -73.79 -58.31 REMARK 500 ASN A 477 170.14 175.20 REMARK 500 ASP A 480 22.81 -77.71 REMARK 500 GLU B 4 158.97 -49.88 REMARK 500 LYS B 20 176.21 -59.95 REMARK 500 THR B 37 -169.07 -126.69 REMARK 500 TYR B 81 132.34 170.17 REMARK 500 TYR B 83 125.88 -172.53 REMARK 500 PRO B 84 -46.51 -29.76 REMARK 500 SER B 93 -149.28 -154.07 REMARK 500 PHE B 95 -81.65 -86.29 REMARK 500 GLN B 97 79.48 -100.41 REMARK 500 ASP B 110 99.10 -33.20 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 12 NE2 REMARK 620 2 GLU B 124 OE2 76.8 REMARK 620 3 GLU B 124 OE1 108.5 46.9 REMARK 620 4 GLU B 150 OE2 77.5 85.7 61.2 REMARK 620 5 HOH B 603 O 122.1 76.4 87.8 148.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F2A RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG2+ AND GLN REMARK 900 RELATED ID: 2DF4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MN2+ REMARK 900 RELATED ID: 2G5H RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MG2+ DBREF 2G5I A 1 485 UNP P63488 GATA_STAAM 1 485 DBREF 2G5I B 1 475 UNP P64201 GATB_STAAM 1 475 DBREF 2G5I C 1 100 UNP P68807 GATC_STAAM 1 100 SEQADV 2G5I LEU B 476 UNP P64201 EXPRESSION TAG SEQADV 2G5I GLU B 477 UNP P64201 EXPRESSION TAG SEQADV 2G5I HIS B 478 UNP P64201 EXPRESSION TAG SEQADV 2G5I HIS B 479 UNP P64201 EXPRESSION TAG SEQADV 2G5I HIS B 480 UNP P64201 EXPRESSION TAG SEQADV 2G5I HIS B 481 UNP P64201 EXPRESSION TAG SEQADV 2G5I HIS B 482 UNP P64201 EXPRESSION TAG SEQADV 2G5I HIS B 483 UNP P64201 EXPRESSION TAG SEQRES 1 A 485 MET SER ILE ARG TYR GLU SER VAL GLU ASN LEU LEU THR SEQRES 2 A 485 LEU ILE LYS ASP LYS LYS ILE LYS PRO SER ASP VAL VAL SEQRES 3 A 485 LYS ASP ILE TYR ASP ALA ILE GLU GLU THR ASP PRO THR SEQRES 4 A 485 ILE LYS SER PHE LEU ALA LEU ASP LYS GLU ASN ALA ILE SEQRES 5 A 485 LYS LYS ALA GLN GLU LEU ASP GLU LEU GLN ALA LYS ASP SEQRES 6 A 485 GLN MET ASP GLY LYS LEU PHE GLY ILE PRO MET GLY ILE SEQRES 7 A 485 LYS ASP ASN ILE ILE THR ASN GLY LEU GLU THR THR CYS SEQRES 8 A 485 ALA SER LYS MET LEU GLU GLY PHE VAL PRO ILE TYR GLU SEQRES 9 A 485 SER THR VAL MET GLU LYS LEU HIS LYS GLU ASN ALA VAL SEQRES 10 A 485 LEU ILE GLY LYS LEU ASN MET ASP GLU PHE ALA MET GLY SEQRES 11 A 485 GLY SER THR GLU THR SER TYR PHE LYS LYS THR VAL ASN SEQRES 12 A 485 PRO PHE ASP HIS LYS ALA VAL PRO GLY GLY SER SER GLY SEQRES 13 A 485 GLY SER ALA ALA ALA VAL ALA ALA GLY LEU VAL PRO LEU SEQRES 14 A 485 SER LEU GLY SER ASP THR GLY GLY SER ILE ARG GLN PRO SEQRES 15 A 485 ALA ALA TYR CYS GLY VAL VAL GLY MET LYS PRO THR TYR SEQRES 16 A 485 GLY ARG VAL SER ARG PHE GLY LEU VAL ALA PHE ALA SER SEQRES 17 A 485 SER LEU ASP GLN ILE GLY PRO LEU THR ARG ASN VAL LYS SEQRES 18 A 485 ASP ASN ALA ILE VAL LEU GLU ALA ILE SER GLY ALA ASP SEQRES 19 A 485 VAL ASN ASP SER THR SER ALA PRO VAL ASP ASP VAL ASP SEQRES 20 A 485 PHE THR SER GLU ILE GLY LYS ASP ILE LYS GLY LEU LYS SEQRES 21 A 485 VAL ALA LEU PRO LYS GLU TYR LEU GLY GLU GLY VAL ALA SEQRES 22 A 485 ASP ASP VAL LYS GLU ALA VAL GLN ASN ALA VAL GLU THR SEQRES 23 A 485 LEU LYS SER LEU GLY ALA VAL VAL GLU GLU VAL SER LEU SEQRES 24 A 485 PRO ASN THR LYS PHE GLY ILE PRO SER TYR TYR VAL ILE SEQRES 25 A 485 ALA SER SER GLU ALA SER SER ASN LEU SER ARG PHE ASP SEQRES 26 A 485 GLY ILE ARG TYR GLY TYR HIS SER LYS GLU ALA HIS SER SEQRES 27 A 485 LEU GLU GLU LEU TYR LYS MET SER ARG SER GLU GLY PHE SEQRES 28 A 485 GLY LYS GLU VAL LYS ARG ARG ILE PHE LEU GLY THR PHE SEQRES 29 A 485 ALA LEU SER SER GLY TYR TYR ASP ALA TYR TYR LYS LYS SEQRES 30 A 485 SER GLN LYS VAL ARG THR LEU ILE LYS ASN ASP PHE ASP SEQRES 31 A 485 LYS VAL PHE GLU ASN TYR ASP VAL VAL VAL GLY PRO THR SEQRES 32 A 485 ALA PRO THR THR ALA PHE ASN LEU GLY GLU GLU ILE ASP SEQRES 33 A 485 ASP PRO LEU THR MET TYR ALA ASN ASP LEU LEU THR THR SEQRES 34 A 485 PRO VAL ASN LEU ALA GLY LEU PRO GLY ILE SER VAL PRO SEQRES 35 A 485 CYS GLY GLN SER ASN GLY ARG PRO ILE GLY LEU GLN PHE SEQRES 36 A 485 ILE GLY LYS PRO PHE ASP GLU LYS THR LEU TYR ARG VAL SEQRES 37 A 485 ALA TYR GLN TYR GLU THR GLN TYR ASN LEU HIS ASP VAL SEQRES 38 A 485 TYR GLU LYS LEU SEQRES 1 B 483 MET HIS PHE GLU THR VAL ILE GLY LEU GLU VAL HIS VAL SEQRES 2 B 483 GLU LEU LYS THR ASP SER LYS MET PHE SER PRO SER PRO SEQRES 3 B 483 ALA HIS PHE GLY ALA GLU PRO ASN SER ASN THR ASN VAL SEQRES 4 B 483 ILE ASP LEU ALA TYR PRO GLY VAL LEU PRO VAL VAL ASN SEQRES 5 B 483 LYS ARG ALA VAL ASP TRP ALA MET ARG ALA ALA MET ALA SEQRES 6 B 483 LEU ASN MET GLU ILE ALA THR GLU SER LYS PHE ASP ARG SEQRES 7 B 483 LYS ASN TYR PHE TYR PRO ASP ASN PRO LYS ALA TYR GLN SEQRES 8 B 483 ILE SER GLN PHE ASP GLN PRO ILE GLY GLU ASN GLY TYR SEQRES 9 B 483 ILE ASP ILE GLU VAL ASP GLY GLU THR LYS ARG ILE GLY SEQRES 10 B 483 ILE THR ARG LEU HIS MET GLU GLU ASP ALA GLY LYS SER SEQRES 11 B 483 THR HIS LYS GLY GLU TYR SER LEU VAL ASP LEU ASN ARG SEQRES 12 B 483 GLN GLY THR PRO LEU ILE GLU ILE VAL SER GLU PRO ASP SEQRES 13 B 483 ILE ARG SER PRO LYS GLU ALA TYR ALA TYR LEU GLU LYS SEQRES 14 B 483 LEU ARG SER ILE ILE GLN TYR THR GLY VAL SER ASP VAL SEQRES 15 B 483 LYS MET GLU GLU GLY SER LEU ARG CYS ASP ALA ASN ILE SEQRES 16 B 483 SER LEU ARG PRO TYR GLY GLN GLU LYS PHE GLY THR LYS SEQRES 17 B 483 ALA GLU LEU LYS ASN LEU ASN SER PHE ASN TYR VAL ARG SEQRES 18 B 483 LYS GLY LEU GLU TYR GLU GLU LYS ARG GLN GLU GLU GLU SEQRES 19 B 483 LEU LEU ASN GLY GLY GLU ILE GLY GLN GLU THR ARG ARG SEQRES 20 B 483 PHE ASP GLU SER THR GLY LYS THR ILE LEU MET ARG VAL SEQRES 21 B 483 LYS GLU GLY SER ASP ASP TYR ARG TYR PHE PRO GLU PRO SEQRES 22 B 483 ASP ILE VAL PRO LEU TYR ILE ASP ASP ALA TRP LYS GLU SEQRES 23 B 483 ARG VAL ARG GLN THR ILE PRO GLU LEU PRO ASP GLU ARG SEQRES 24 B 483 LYS ALA LYS TYR VAL ASN GLU LEU GLY LEU PRO ALA TYR SEQRES 25 B 483 ASP ALA HIS VAL LEU THR LEU THR LYS GLU MET SER ASP SEQRES 26 B 483 PHE PHE GLU SER THR ILE GLU HIS GLY ALA ASP VAL LYS SEQRES 27 B 483 LEU THR SER ASN TRP LEU MET GLY GLY VAL ASN GLU TYR SEQRES 28 B 483 LEU ASN LYS ASN GLN VAL GLU LEU LEU ASP THR LYS LEU SEQRES 29 B 483 THR PRO GLU ASN LEU ALA GLY MET ILE LYS LEU ILE GLU SEQRES 30 B 483 ASP GLY THR MET SER SER LYS ILE ALA LYS LYS VAL PHE SEQRES 31 B 483 PRO GLU LEU ALA ALA LYS GLY GLY ASN ALA LYS GLN ILE SEQRES 32 B 483 MET GLU ASP ASN GLY LEU VAL GLN ILE SER ASP GLU ALA SEQRES 33 B 483 THR LEU LEU LYS PHE VAL ASN GLU ALA LEU ASP ASN ASN SEQRES 34 B 483 GLU GLN SER VAL GLU ASP TYR LYS ASN GLY LYS GLY LYS SEQRES 35 B 483 ALA MET GLY PHE LEU VAL GLY GLN ILE MET LYS ALA SER SEQRES 36 B 483 LYS GLY GLN ALA ASN PRO GLN LEU VAL ASN GLN LEU LEU SEQRES 37 B 483 LYS GLN GLU LEU ASP LYS ARG LEU GLU HIS HIS HIS HIS SEQRES 38 B 483 HIS HIS SEQRES 1 C 100 MET THR LYS VAL THR ARG GLU GLU VAL GLU HIS ILE ALA SEQRES 2 C 100 ASN LEU ALA ARG LEU GLN ILE SER PRO GLU GLU THR GLU SEQRES 3 C 100 GLU MET ALA ASN THR LEU GLU SER ILE LEU ASP PHE ALA SEQRES 4 C 100 LYS GLN ASN ASP SER ALA ASP THR GLU GLY VAL GLU PRO SEQRES 5 C 100 THR TYR HIS VAL LEU ASP LEU GLN ASN VAL LEU ARG GLU SEQRES 6 C 100 ASP LYS ALA ILE LYS GLY ILE PRO GLN GLU LEU ALA LEU SEQRES 7 C 100 LYS ASN ALA LYS GLU THR GLU ASP GLY GLN PHE LYS VAL SEQRES 8 C 100 PRO THR ILE MET ASN GLU GLU ASP ALA HET MG B 501 1 HET ADP B 601 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 MG MG 2+ FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *90(H2 O) HELIX 1 1 SER A 7 ASP A 17 1 11 HELIX 2 2 LYS A 21 LYS A 41 1 21 HELIX 3 3 ASP A 47 LYS A 64 1 18 HELIX 4 4 SER A 93 GLU A 97 5 5 HELIX 5 5 SER A 105 GLU A 114 1 10 HELIX 6 6 ASP A 125 MET A 129 5 5 HELIX 7 7 SER A 155 ALA A 164 1 10 HELIX 8 8 ILE A 179 CYS A 186 1 8 HELIX 9 9 ASN A 219 SER A 231 1 13 HELIX 10 10 GLU A 266 GLY A 269 5 4 HELIX 11 11 ALA A 273 SER A 289 1 17 HELIX 12 12 LEU A 299 LYS A 303 5 5 HELIX 13 13 PHE A 304 LEU A 321 1 18 HELIX 14 14 SER A 338 PHE A 351 1 14 HELIX 15 15 GLY A 352 SER A 367 1 16 HELIX 16 16 TYR A 374 TYR A 396 1 23 HELIX 17 17 ASP A 417 ALA A 423 1 7 HELIX 18 18 ASN A 424 LEU A 426 5 3 HELIX 19 19 THR A 428 ALA A 434 1 7 HELIX 20 20 ASP A 461 TYR A 476 1 16 HELIX 21 21 VAL A 481 LEU A 485 5 5 HELIX 22 22 ASN B 52 LEU B 66 1 15 HELIX 23 23 SER B 159 THR B 177 1 19 HELIX 24 24 LYS B 183 GLY B 187 5 5 HELIX 25 25 SER B 216 LEU B 235 1 20 HELIX 26 26 ASP B 281 GLN B 290 1 10 HELIX 27 27 LEU B 295 LEU B 307 1 13 HELIX 28 28 PRO B 310 THR B 318 1 9 HELIX 29 29 THR B 320 GLU B 332 1 13 HELIX 30 30 ASP B 336 GLY B 346 1 11 HELIX 31 31 GLY B 346 LYS B 354 1 9 HELIX 32 32 THR B 365 GLY B 379 1 15 HELIX 33 33 SER B 382 ALA B 395 1 14 HELIX 34 34 LYS B 401 ASP B 406 1 6 HELIX 35 35 THR C 5 ALA C 16 1 12 HELIX 36 36 GLU C 24 LYS C 40 1 17 HELIX 37 37 GLN C 41 ALA C 45 5 5 HELIX 38 38 PRO C 73 LYS C 79 1 7 SHEET 1 A11 PHE A 43 LEU A 46 0 SHEET 2 A11 VAL A 117 LEU A 122 -1 O LYS A 121 N ALA A 45 SHEET 3 A11 PRO A 75 LYS A 79 1 N ILE A 78 O LEU A 122 SHEET 4 A11 LEU A 169 SER A 173 1 O LEU A 171 N GLY A 77 SHEET 5 A11 ILE A 213 THR A 217 -1 O GLY A 214 N GLY A 172 SHEET 6 A11 VAL A 189 LYS A 192 -1 N VAL A 189 O THR A 217 SHEET 7 A11 GLY A 438 SER A 446 -1 O SER A 440 N GLY A 190 SHEET 8 A11 ARG A 449 GLY A 457 -1 O ARG A 449 N SER A 446 SHEET 9 A11 VAL A 398 PRO A 402 -1 N GLY A 401 O GLN A 454 SHEET 10 A11 LYS A 260 PRO A 264 1 N ALA A 262 O VAL A 400 SHEET 11 A11 VAL A 293 VAL A 297 1 O VAL A 293 N VAL A 261 SHEET 1 B 6 GLY B 100 GLU B 108 0 SHEET 2 B 6 THR B 113 GLU B 125 -1 O ILE B 116 N ILE B 105 SHEET 3 B 6 PRO B 147 SER B 153 -1 O GLU B 150 N HIS B 122 SHEET 4 B 6 GLU B 4 GLU B 14 -1 N VAL B 13 O ILE B 149 SHEET 5 B 6 LEU B 189 ARG B 198 -1 O ASP B 192 N GLU B 10 SHEET 6 B 6 ALA B 209 LEU B 214 -1 O LEU B 211 N ALA B 193 SHEET 1 C 2 GLU B 73 SER B 74 0 SHEET 2 C 2 LEU B 278 TYR B 279 -1 O LEU B 278 N SER B 74 SHEET 1 D 3 TYR B 90 SER B 93 0 SHEET 2 D 3 ASP B 77 ASN B 80 -1 N ASP B 77 O SER B 93 SHEET 3 D 3 PHE B 270 PRO B 271 -1 O PHE B 270 N ARG B 78 SHEET 1 E 4 LYS B 129 HIS B 132 0 SHEET 2 E 4 SER B 137 ASP B 140 -1 O LEU B 138 N THR B 131 SHEET 3 E 4 GLN C 88 VAL C 91 -1 O PHE C 89 N VAL B 139 SHEET 4 E 4 THR C 84 GLU C 85 -1 N GLU C 85 O GLN C 88 SHEET 1 F 2 ARG B 246 ASP B 249 0 SHEET 2 F 2 LYS B 254 LEU B 257 -1 O ILE B 256 N ARG B 247 LINK NE2 HIS B 12 MG MG B 501 1555 1555 2.43 LINK OE2 GLU B 124 MG MG B 501 1555 1555 2.80 LINK OE1 GLU B 124 MG MG B 501 1555 1555 2.72 LINK OE2 GLU B 150 MG MG B 501 1555 1555 1.73 LINK MG MG B 501 O HOH B 603 1555 1555 2.57 CISPEP 1 GLY A 153 SER A 154 0 1.47 SITE 1 AC1 4 HIS B 12 GLU B 124 GLU B 150 HOH B 603 SITE 1 AC2 13 VAL B 6 ILE B 7 GLU B 10 VAL B 152 SITE 2 AC2 13 SER B 153 PRO B 155 ASN B 194 SER B 196 SITE 3 AC2 13 PHE B 205 GLY B 206 LYS B 208 HOH B 609 SITE 4 AC2 13 HOH B 616 CRYST1 76.860 85.279 183.625 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005446 0.00000