HEADER LYASE 24-FEB-06 2G64 TITLE STRUCTURE OF CAENORHABDITIS ELEGANS 6-PYRUVOYL TETRAHYDROPTERIN TITLE 2 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 6-PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PTPS, PTP SYNTHASE; COMPND 5 EC: 4.2.3.12; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: B0041.6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 AI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS TETRAHYDROBIOPTERIN BIOSYNTHESIS, PHOSPHATE ELIMINATION, PTERINE KEYWDS 2 SYNTHESIS, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.C.WENGERTER,Y.PATSKOVSKY,C.ZHAN,U.RAMAGOPAL,S.MILSTEIN,M.VIDAL, AUTHOR 2 S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 7 30-AUG-23 2G64 1 REMARK REVDAT 6 20-OCT-21 2G64 1 SEQADV REVDAT 5 03-FEB-21 2G64 1 AUTHOR REMARK LINK REVDAT 4 13-JUL-11 2G64 1 VERSN REVDAT 3 24-FEB-09 2G64 1 VERSN REVDAT 2 14-NOV-06 2G64 1 AUTHOR DBREF KEYWDS MASTER REVDAT 2 2 1 REMARK JRNL REVDAT 1 14-MAR-06 2G64 0 JRNL AUTH B.C.WENGERTER,Y.PATSKOVSKY,C.ZHAN,U.RAMAGOPAL,S.MILSTEIN, JRNL AUTH 2 M.VIDAL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF CAENORHABDITIS ELEGANS 6-PYRUVOYL JRNL TITL 2 TETRAHYDROPTERIN SYNTHASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 13641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1226 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1666 ; 1.251 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 163 ; 6.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;36.923 ;24.340 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 246 ;14.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 903 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 560 ; 0.232 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 833 ; 0.310 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 233 ; 0.189 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.193 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 89 ; 0.187 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.280 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 737 ; 4.136 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1217 ; 5.346 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 499 ; 9.172 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 436 ;10.877 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : 0.03000 REMARK 200 FOR THE DATA SET : 38.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.09400 REMARK 200 R SYM FOR SHELL (I) : 0.10300 REMARK 200 FOR SHELL : 14.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1B66 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 1 M SODIUM SUCCINATE, PH REMARK 280 7.00, 1% PEG 2000ME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 34.89600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 20.14721 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.39600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 34.89600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 20.14721 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.39600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 34.89600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 20.14721 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.39600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 34.89600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 20.14721 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.39600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 34.89600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 20.14721 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.39600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 34.89600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 20.14721 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.39600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 40.29443 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 106.79200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 40.29443 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 106.79200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 40.29443 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 106.79200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 40.29443 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 106.79200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 40.29443 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 106.79200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 40.29443 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 106.79200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -352.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 34.89600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 60.44164 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -34.89600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 60.44164 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -34.89600 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 20.14721 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 213.58400 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 80.58886 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 213.58400 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 34.89600 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 20.14721 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 213.58400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 39.95 -85.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 NE2 REMARK 620 2 HIS A 44 NE2 93.9 REMARK 620 3 HIS A 46 NE2 111.5 109.3 REMARK 620 4 HOH A3084 O 166.5 83.7 81.7 REMARK 620 5 HOH A3139 O 109.0 111.5 118.8 60.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 O REMARK 620 2 ASN A 40 O 111.6 REMARK 620 3 HIS A 44 ND1 86.6 159.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 47 O REMARK 620 2 HOH A3019 O 150.6 REMARK 620 3 HOH A3117 O 69.9 106.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T2216 RELATED DB: TARGETDB DBREF 2G64 A 1 140 UNP O02058 PTPS_CAEEL 1 140 SEQADV 2G64 SER A 140 UNP O02058 CYS 140 ENGINEERED MUTATION SEQRES 1 A 140 MET PHE ARG MET PRO ILE VAL THR MET GLU ARG VAL ASP SEQRES 2 A 140 SER PHE SER ALA ALA HIS ARG LEU HIS SER GLU LYS LEU SEQRES 3 A 140 SER ASP ALA GLU ASN LYS GLU THR PHE GLY LYS CYS ASN SEQRES 4 A 140 ASN SER ASN GLY HIS GLY HIS ASN TYR VAL TRP LYS VAL SEQRES 5 A 140 LYS LEU ARG GLY GLU VAL ASP PRO THR SER GLY MET VAL SEQRES 6 A 140 TYR ASP LEU ALA LYS LEU LYS LYS GLU MET SER LEU VAL SEQRES 7 A 140 LEU ASP THR VAL ASP HIS ARG ASN LEU ASP LYS ASP VAL SEQRES 8 A 140 GLU PHE PHE LYS THR THR VAL SER THR SER GLU ASN VAL SEQRES 9 A 140 ALA ILE TYR MET PHE GLU LYS LEU LYS SER VAL MET SER SEQRES 10 A 140 ASN PRO SER VAL LEU TYR LYS VAL THR ILE GLU GLU THR SEQRES 11 A 140 PRO LYS ASN ILE PHE THR TYR LYS GLY SER HET NA A1001 1 HET NA A1002 1 HET ZN A2001 1 HET GOL A3001 6 HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 ZN ZN 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *167(H2 O) HELIX 1 1 SER A 27 GLY A 36 1 10 HELIX 2 2 LYS A 37 ASN A 40 5 4 HELIX 3 3 ASP A 67 THR A 81 1 15 HELIX 4 4 LEU A 87 VAL A 91 1 5 HELIX 5 5 GLU A 92 THR A 96 5 5 HELIX 6 6 THR A 100 MET A 116 1 17 HELIX 7 7 ASN A 118 SER A 120 5 3 SHEET 1 A 5 ARG A 85 ASN A 86 0 SHEET 2 A 5 ILE A 6 HIS A 19 1 N ALA A 18 O ARG A 85 SHEET 3 A 5 HIS A 44 GLU A 57 -1 O LEU A 54 N MET A 9 SHEET 4 A 5 LEU A 122 THR A 130 -1 O LYS A 124 N LYS A 53 SHEET 5 A 5 ASN A 133 TYR A 137 -1 O PHE A 135 N ILE A 127 LINK NE2 HIS A 19 ZN ZN A2001 1555 1555 2.13 LINK O CYS A 38 NA NA A1002 1555 1555 2.73 LINK O ASN A 40 NA NA A1002 1555 1555 2.83 LINK ND1 HIS A 44 NA NA A1002 1555 1555 2.87 LINK NE2 HIS A 44 ZN ZN A2001 1555 1555 2.14 LINK NE2 HIS A 46 ZN ZN A2001 1555 1555 2.10 LINK O ASN A 47 NA NA A1001 1555 1555 2.99 LINK NA NA A1001 O HOH A3019 1555 1555 2.65 LINK NA NA A1001 O HOH A3117 1555 1555 2.78 LINK ZN ZN A2001 O HOH A3084 1555 11566 2.73 LINK ZN ZN A2001 O HOH A3139 1555 1555 1.83 SITE 1 AC1 7 ASN A 47 GLU A 128 GLU A 129 THR A 130 SITE 2 AC1 7 PRO A 131 HOH A3019 HOH A3117 SITE 1 AC2 5 ARG A 20 CYS A 38 ASN A 40 GLY A 43 SITE 2 AC2 5 HIS A 44 SITE 1 AC3 5 HIS A 19 HIS A 44 HIS A 46 HOH A3084 SITE 2 AC3 5 HOH A3139 SITE 1 AC4 5 LYS A 53 TYR A 123 LYS A 124 HOH A3116 SITE 2 AC4 5 HOH A3121 CRYST1 69.792 69.792 160.188 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014328 0.008272 0.000000 0.00000 SCALE2 0.000000 0.016545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006243 0.00000