data_2G7B # _entry.id 2G7B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2G7B pdb_00002g7b 10.2210/pdb2g7b/pdb RCSB RCSB036778 ? ? WWPDB D_1000036778 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2G7A . unspecified PDB 2G79 . unspecified PDB 2G78 . unspecified # _pdbx_database_status.entry_id 2G7B _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-02-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vaezeslami, S.' 1 'Geiger, J.H.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Protein design: reengineering cellular retinoic acid binding protein II into a rhodopsin protein mimic.' J.Am.Chem.Soc. 129 6140 6148 2007 JACSAT US 0002-7863 0004 ? 17447762 10.1021/ja067546r 1 ;determining crystal structures of proteins and protein complexes by X-ray crystallography: X-ray crystallographic studies of the mutants of cellular retinoic acid binding protein type II toward designing a mimic of rhodopsin ; Thesis ? ? ? ? ? ? ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vasileiou, C.' 1 ? primary 'Vaezeslami, S.' 2 ? primary 'Crist, R.M.' 3 ? primary 'Rabago-Smith, M.' 4 ? primary 'Geiger, J.H.' 5 ? primary 'Borhan, B.' 6 ? 1 'Vaezeslami, S.' 7 ? # _cell.length_a 45.459 _cell.length_b 45.514 _cell.length_c 77.747 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2G7B _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2G7B _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cellular retinoic acid-binding protein 2' 15525.708 1 ? 'R132K, R111L, L121E' ? ? 2 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 3 non-polymer syn 'ALL-TRANS AXEROPHTHENE' 270.452 1 ? ? ? ? 4 water nat water 18.015 250 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cellular retinoic acid-binding protein II, CRABP-II, Retinoic acid-binding protein II, cellular' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVYVRE ; _entity_poly.pdbx_seq_one_letter_code_can ;PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVYVRE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ASN n 1 3 PHE n 1 4 SER n 1 5 GLY n 1 6 ASN n 1 7 TRP n 1 8 LYS n 1 9 ILE n 1 10 ILE n 1 11 ARG n 1 12 SER n 1 13 GLU n 1 14 ASN n 1 15 PHE n 1 16 GLU n 1 17 GLU n 1 18 LEU n 1 19 LEU n 1 20 LYS n 1 21 VAL n 1 22 LEU n 1 23 GLY n 1 24 VAL n 1 25 ASN n 1 26 VAL n 1 27 MET n 1 28 LEU n 1 29 ARG n 1 30 LYS n 1 31 ILE n 1 32 ALA n 1 33 VAL n 1 34 ALA n 1 35 ALA n 1 36 ALA n 1 37 SER n 1 38 LYS n 1 39 PRO n 1 40 ALA n 1 41 VAL n 1 42 GLU n 1 43 ILE n 1 44 LYS n 1 45 GLN n 1 46 GLU n 1 47 GLY n 1 48 ASP n 1 49 THR n 1 50 PHE n 1 51 TYR n 1 52 ILE n 1 53 LYS n 1 54 THR n 1 55 SER n 1 56 THR n 1 57 THR n 1 58 VAL n 1 59 ARG n 1 60 THR n 1 61 THR n 1 62 GLU n 1 63 ILE n 1 64 ASN n 1 65 PHE n 1 66 LYS n 1 67 VAL n 1 68 GLY n 1 69 GLU n 1 70 GLU n 1 71 PHE n 1 72 GLU n 1 73 GLU n 1 74 GLN n 1 75 THR n 1 76 VAL n 1 77 ASP n 1 78 GLY n 1 79 ARG n 1 80 PRO n 1 81 CYS n 1 82 LYS n 1 83 SER n 1 84 LEU n 1 85 VAL n 1 86 LYS n 1 87 TRP n 1 88 GLU n 1 89 SER n 1 90 GLU n 1 91 ASN n 1 92 LYS n 1 93 MET n 1 94 VAL n 1 95 CYS n 1 96 GLU n 1 97 GLN n 1 98 LYS n 1 99 LEU n 1 100 LEU n 1 101 LYS n 1 102 GLY n 1 103 GLU n 1 104 GLY n 1 105 PRO n 1 106 LYS n 1 107 THR n 1 108 SER n 1 109 TRP n 1 110 THR n 1 111 LEU n 1 112 GLU n 1 113 LEU n 1 114 THR n 1 115 ASN n 1 116 ASP n 1 117 GLY n 1 118 GLU n 1 119 LEU n 1 120 ILE n 1 121 GLU n 1 122 THR n 1 123 MET n 1 124 THR n 1 125 ALA n 1 126 ASP n 1 127 ASP n 1 128 VAL n 1 129 VAL n 1 130 CYS n 1 131 THR n 1 132 LYS n 1 133 VAL n 1 134 TYR n 1 135 VAL n 1 136 ARG n 1 137 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CRABP2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET17-b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RABP2_HUMAN _struct_ref.pdbx_db_accession P29373 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2G7B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 137 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P29373 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 137 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 137 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2G7B LEU A 111 ? UNP P29373 ARG 111 'engineered mutation' 111 1 1 2G7B GLU A 121 ? UNP P29373 LEU 121 'engineered mutation' 121 2 1 2G7B LYS A 132 ? UNP P29373 ARG 132 'engineered mutation' 132 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 AZE non-polymer . 'ALL-TRANS AXEROPHTHENE' ? 'C20 H30' 270.452 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2G7B # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_percent_sol 52.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '18% (w/v) PEG 6000 and 0.1 M sodium acetate pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 77 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-06-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 32-ID' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 32-ID # _reflns.entry_id 2G7B _reflns.d_resolution_high 1.180 _reflns.d_resolution_low 40.000 _reflns.number_obs 52457 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 25.60 _reflns.pdbx_chi_squared 0.567 _reflns.percent_possible_obs 96.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 54241 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.18 _reflns_shell.d_res_low 1.22 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs 4008 _reflns_shell.Rmerge_I_obs 0.332 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.395 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs 74.60 _reflns_shell.number_unique_all ? _reflns_shell.percent_possible_all 74.6 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.180 _refine.ls_d_res_low 22.810 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 96.710 _refine.ls_number_reflns_obs 52405 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.13 _refine.ls_R_factor_R_work 0.129 _refine.ls_R_factor_R_free 0.155 _refine.ls_percent_reflns_R_free 5.600 _refine.ls_number_reflns_R_free 2920 _refine.B_iso_mean 12.180 _refine.aniso_B[1][1] 0.310 _refine.aniso_B[2][2] 0.200 _refine.aniso_B[3][3] -0.510 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.972 _refine.pdbx_overall_ESU_R_Free 0.032 _refine.overall_SU_ML 0.019 _refine.overall_SU_B 0.899 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2G7B _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 52405 _refine.ls_R_factor_obs 0.13 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'Rigid Body Refinement' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.031 _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1146 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 285 _refine_hist.number_atoms_total 1453 _refine_hist.d_res_high 1.180 _refine_hist.d_res_low 22.810 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1182 0.019 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1117 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1601 1.795 1.983 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2625 1.585 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 136 7.047 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 55 33.278 26.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 233 10.440 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 10.899 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 195 0.122 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1252 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 220 0.011 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 206 0.333 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1184 0.241 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 564 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 773 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 194 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 2 0.362 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.417 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 51 0.288 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 27 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 697 1.917 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 283 0.952 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1159 2.866 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 498 3.668 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 441 5.242 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2381 1.949 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 287 9.638 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2283 4.631 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.180 _refine_ls_shell.d_res_low 1.208 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 69.320 _refine_ls_shell.number_reflns_R_work 2586 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.R_factor_R_free 0.215 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 152 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 2738 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2G7B _struct.title ;Crystal Structure of the R132K:R111L:L121E mutant of Cellular Retinoic Acid Binding Protein Type II In Complex With All-Trans-Retinal At 1.18 Angstroms Resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'CRABPII, Retinoic Acid, Retinoids, Beta Barrel, High Resolution, Schiff Base, Protonated Schiff Base, Retinal, TRANSPORT PROTEIN' _struct_keywords.entry_id 2G7B _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 14 ? LEU A 22 ? ASN A 14 LEU A 22 1 ? 9 HELX_P HELX_P2 2 ASN A 25 ? SER A 37 ? ASN A 25 SER A 37 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A LYS 132 NZ ? ? ? 1_555 D AZE . C15 ? ? A LYS 132 A AZE 138 1_555 ? ? ? ? ? ? ? 1.322 ? ? metalc1 metalc ? ? B NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 300 A HOH 454 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc2 metalc ? ? B NA . NA ? ? ? 1_555 E HOH . O A ? A NA 300 A HOH 512 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc3 metalc ? ? C NA . NA ? ? ? 1_555 E HOH . O B ? A NA 301 A HOH 515 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 301 A HOH 550 1_555 ? ? ? ? ? ? ? 2.083 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 59 ? LYS A 66 ? ARG A 59 LYS A 66 A 2 THR A 49 ? THR A 56 ? THR A 49 THR A 56 A 3 ALA A 40 ? GLU A 46 ? ALA A 40 GLU A 46 A 4 GLY A 5 ? GLU A 13 ? GLY A 5 GLU A 13 A 5 VAL A 128 ? ARG A 136 ? VAL A 128 ARG A 136 A 6 LEU A 119 ? ALA A 125 ? LEU A 119 ALA A 125 A 7 THR A 107 ? LEU A 113 ? THR A 107 LEU A 113 A 8 LYS A 92 ? LEU A 99 ? LYS A 92 LEU A 99 A 9 PRO A 80 ? SER A 89 ? PRO A 80 SER A 89 A 10 PHE A 71 ? GLN A 74 ? PHE A 71 GLN A 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 65 ? O PHE A 65 N PHE A 50 ? N PHE A 50 A 2 3 O LYS A 53 ? O LYS A 53 N GLU A 42 ? N GLU A 42 A 3 4 O VAL A 41 ? O VAL A 41 N TRP A 7 ? N TRP A 7 A 4 5 N ILE A 10 ? N ILE A 10 O VAL A 133 ? O VAL A 133 A 5 6 O CYS A 130 ? O CYS A 130 N MET A 123 ? N MET A 123 A 6 7 O ILE A 120 ? O ILE A 120 N GLU A 112 ? N GLU A 112 A 7 8 O TRP A 109 ? O TRP A 109 N CYS A 95 ? N CYS A 95 A 8 9 O LYS A 98 ? O LYS A 98 N LYS A 82 ? N LYS A 82 A 9 10 O SER A 83 ? O SER A 83 N PHE A 71 ? N PHE A 71 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 300 ? 3 'BINDING SITE FOR RESIDUE NA A 300' AC2 Software A NA 301 ? 6 'BINDING SITE FOR RESIDUE NA A 301' AC3 Software A AZE 138 ? 10 'BINDING SITE FOR RESIDUE AZE A 138' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 48 ? ASP A 48 . ? 1_555 ? 2 AC1 3 HOH E . ? HOH A 454 . ? 1_555 ? 3 AC1 3 HOH E . ? HOH A 512 . ? 1_555 ? 4 AC2 6 VAL A 26 ? VAL A 26 . ? 2_454 ? 5 AC2 6 GLY A 68 ? GLY A 68 . ? 1_555 ? 6 AC2 6 ASN A 115 ? ASN A 115 . ? 4_545 ? 7 AC2 6 HOH E . ? HOH A 515 . ? 1_555 ? 8 AC2 6 HOH E . ? HOH A 531 . ? 4_545 ? 9 AC2 6 HOH E . ? HOH A 550 . ? 1_555 ? 10 AC3 10 GLU A 13 ? GLU A 13 . ? 3_455 ? 11 AC3 10 PHE A 15 ? PHE A 15 . ? 1_555 ? 12 AC3 10 LEU A 28 ? LEU A 28 . ? 1_555 ? 13 AC3 10 THR A 54 ? THR A 54 . ? 1_555 ? 14 AC3 10 ARG A 59 ? ARG A 59 . ? 1_555 ? 15 AC3 10 VAL A 76 ? VAL A 76 . ? 1_555 ? 16 AC3 10 GLU A 121 ? GLU A 121 . ? 1_555 ? 17 AC3 10 MET A 123 ? MET A 123 . ? 1_555 ? 18 AC3 10 THR A 131 ? THR A 131 . ? 3_455 ? 19 AC3 10 LYS A 132 ? LYS A 132 . ? 1_555 ? # _atom_sites.entry_id 2G7B _atom_sites.fract_transf_matrix[1][1] 0.02200 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02197 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01286 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 MET 27 27 27 MET MET A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 MET 123 123 123 MET MET A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 GLU 137 137 137 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 300 300 NA NA A . C 2 NA 1 301 301 NA NA A . D 3 AZE 1 138 138 AZE AZE A . E 4 HOH 1 302 1 HOH HOH A . E 4 HOH 2 303 2 HOH HOH A . E 4 HOH 3 304 3 HOH HOH A . E 4 HOH 4 305 4 HOH HOH A . E 4 HOH 5 306 5 HOH HOH A . E 4 HOH 6 307 6 HOH HOH A . E 4 HOH 7 308 7 HOH HOH A . E 4 HOH 8 309 8 HOH HOH A . E 4 HOH 9 310 9 HOH HOH A . E 4 HOH 10 311 10 HOH HOH A . E 4 HOH 11 312 11 HOH HOH A . E 4 HOH 12 313 12 HOH HOH A . E 4 HOH 13 314 13 HOH HOH A . E 4 HOH 14 315 14 HOH HOH A . E 4 HOH 15 316 15 HOH HOH A . E 4 HOH 16 317 16 HOH HOH A . E 4 HOH 17 318 17 HOH HOH A . E 4 HOH 18 319 18 HOH HOH A . E 4 HOH 19 320 19 HOH HOH A . E 4 HOH 20 321 20 HOH HOH A . E 4 HOH 21 322 21 HOH HOH A . E 4 HOH 22 323 22 HOH HOH A . E 4 HOH 23 324 23 HOH HOH A . E 4 HOH 24 325 24 HOH HOH A . E 4 HOH 25 326 25 HOH HOH A . E 4 HOH 26 327 26 HOH HOH A . E 4 HOH 27 328 27 HOH HOH A . E 4 HOH 28 329 28 HOH HOH A . E 4 HOH 29 330 29 HOH HOH A . E 4 HOH 30 331 30 HOH HOH A . E 4 HOH 31 332 31 HOH HOH A . E 4 HOH 32 333 32 HOH HOH A . E 4 HOH 33 334 33 HOH HOH A . E 4 HOH 34 335 34 HOH HOH A . E 4 HOH 35 336 35 HOH HOH A . E 4 HOH 36 337 36 HOH HOH A . E 4 HOH 37 338 37 HOH HOH A . E 4 HOH 38 339 38 HOH HOH A . E 4 HOH 39 340 39 HOH HOH A . E 4 HOH 40 341 40 HOH HOH A . E 4 HOH 41 342 41 HOH HOH A . E 4 HOH 42 343 42 HOH HOH A . E 4 HOH 43 344 43 HOH HOH A . E 4 HOH 44 345 44 HOH HOH A . E 4 HOH 45 346 45 HOH HOH A . E 4 HOH 46 347 46 HOH HOH A . E 4 HOH 47 348 47 HOH HOH A . E 4 HOH 48 349 48 HOH HOH A . E 4 HOH 49 350 49 HOH HOH A . E 4 HOH 50 351 50 HOH HOH A . E 4 HOH 51 352 51 HOH HOH A . E 4 HOH 52 353 52 HOH HOH A . E 4 HOH 53 354 53 HOH HOH A . E 4 HOH 54 355 54 HOH HOH A . E 4 HOH 55 356 55 HOH HOH A . E 4 HOH 56 357 56 HOH HOH A . E 4 HOH 57 358 57 HOH HOH A . E 4 HOH 58 359 58 HOH HOH A . E 4 HOH 59 360 59 HOH HOH A . E 4 HOH 60 361 60 HOH HOH A . E 4 HOH 61 362 61 HOH HOH A . E 4 HOH 62 363 62 HOH HOH A . E 4 HOH 63 364 63 HOH HOH A . E 4 HOH 64 365 64 HOH HOH A . E 4 HOH 65 366 65 HOH HOH A . E 4 HOH 66 367 66 HOH HOH A . E 4 HOH 67 368 67 HOH HOH A . E 4 HOH 68 369 68 HOH HOH A . E 4 HOH 69 370 69 HOH HOH A . E 4 HOH 70 371 70 HOH HOH A . E 4 HOH 71 372 71 HOH HOH A . E 4 HOH 72 373 72 HOH HOH A . E 4 HOH 73 374 73 HOH HOH A . E 4 HOH 74 375 74 HOH HOH A . E 4 HOH 75 376 75 HOH HOH A . E 4 HOH 76 377 76 HOH HOH A . E 4 HOH 77 378 77 HOH HOH A . E 4 HOH 78 379 78 HOH HOH A . E 4 HOH 79 380 79 HOH HOH A . E 4 HOH 80 381 80 HOH HOH A . E 4 HOH 81 382 81 HOH HOH A . E 4 HOH 82 383 82 HOH HOH A . E 4 HOH 83 384 83 HOH HOH A . E 4 HOH 84 385 84 HOH HOH A . E 4 HOH 85 386 85 HOH HOH A . E 4 HOH 86 387 86 HOH HOH A . E 4 HOH 87 388 87 HOH HOH A . E 4 HOH 88 389 88 HOH HOH A . E 4 HOH 89 390 89 HOH HOH A . E 4 HOH 90 391 90 HOH HOH A . E 4 HOH 91 392 91 HOH HOH A . E 4 HOH 92 393 92 HOH HOH A . E 4 HOH 93 394 93 HOH HOH A . E 4 HOH 94 395 94 HOH HOH A . E 4 HOH 95 396 95 HOH HOH A . E 4 HOH 96 397 96 HOH HOH A . E 4 HOH 97 398 97 HOH HOH A . E 4 HOH 98 399 98 HOH HOH A . E 4 HOH 99 400 99 HOH HOH A . E 4 HOH 100 401 100 HOH HOH A . E 4 HOH 101 402 101 HOH HOH A . E 4 HOH 102 403 102 HOH HOH A . E 4 HOH 103 404 103 HOH HOH A . E 4 HOH 104 405 104 HOH HOH A . E 4 HOH 105 406 105 HOH HOH A . E 4 HOH 106 407 106 HOH HOH A . E 4 HOH 107 408 107 HOH HOH A . E 4 HOH 108 409 108 HOH HOH A . E 4 HOH 109 410 109 HOH HOH A . E 4 HOH 110 411 110 HOH HOH A . E 4 HOH 111 412 111 HOH HOH A . E 4 HOH 112 413 112 HOH HOH A . E 4 HOH 113 414 113 HOH HOH A . E 4 HOH 114 415 114 HOH HOH A . E 4 HOH 115 416 115 HOH HOH A . E 4 HOH 116 417 116 HOH HOH A . E 4 HOH 117 418 117 HOH HOH A . E 4 HOH 118 419 118 HOH HOH A . E 4 HOH 119 420 119 HOH HOH A . E 4 HOH 120 421 120 HOH HOH A . E 4 HOH 121 422 121 HOH HOH A . E 4 HOH 122 423 122 HOH HOH A . E 4 HOH 123 424 123 HOH HOH A . E 4 HOH 124 425 124 HOH HOH A . E 4 HOH 125 426 125 HOH HOH A . E 4 HOH 126 427 126 HOH HOH A . E 4 HOH 127 428 127 HOH HOH A . E 4 HOH 128 429 128 HOH HOH A . E 4 HOH 129 430 129 HOH HOH A . E 4 HOH 130 431 130 HOH HOH A . E 4 HOH 131 432 131 HOH HOH A . E 4 HOH 132 433 132 HOH HOH A . E 4 HOH 133 434 133 HOH HOH A . E 4 HOH 134 435 134 HOH HOH A . E 4 HOH 135 436 135 HOH HOH A . E 4 HOH 136 437 136 HOH HOH A . E 4 HOH 137 438 137 HOH HOH A . E 4 HOH 138 439 138 HOH HOH A . E 4 HOH 139 440 139 HOH HOH A . E 4 HOH 140 441 140 HOH HOH A . E 4 HOH 141 442 141 HOH HOH A . E 4 HOH 142 443 142 HOH HOH A . E 4 HOH 143 444 143 HOH HOH A . E 4 HOH 144 445 144 HOH HOH A . E 4 HOH 145 446 145 HOH HOH A . E 4 HOH 146 447 146 HOH HOH A . E 4 HOH 147 448 147 HOH HOH A . E 4 HOH 148 449 148 HOH HOH A . E 4 HOH 149 450 149 HOH HOH A . E 4 HOH 150 451 150 HOH HOH A . E 4 HOH 151 452 151 HOH HOH A . E 4 HOH 152 453 152 HOH HOH A . E 4 HOH 153 454 153 HOH HOH A . E 4 HOH 154 455 154 HOH HOH A . E 4 HOH 155 456 155 HOH HOH A . E 4 HOH 156 457 156 HOH HOH A . E 4 HOH 157 458 157 HOH HOH A . E 4 HOH 158 459 158 HOH HOH A . E 4 HOH 159 460 159 HOH HOH A . E 4 HOH 160 461 160 HOH HOH A . E 4 HOH 161 462 161 HOH HOH A . E 4 HOH 162 463 162 HOH HOH A . E 4 HOH 163 464 163 HOH HOH A . E 4 HOH 164 465 164 HOH HOH A . E 4 HOH 165 466 165 HOH HOH A . E 4 HOH 166 467 166 HOH HOH A . E 4 HOH 167 468 167 HOH HOH A . E 4 HOH 168 469 168 HOH HOH A . E 4 HOH 169 470 169 HOH HOH A . E 4 HOH 170 471 170 HOH HOH A . E 4 HOH 171 472 171 HOH HOH A . E 4 HOH 172 473 172 HOH HOH A . E 4 HOH 173 474 173 HOH HOH A . E 4 HOH 174 475 174 HOH HOH A . E 4 HOH 175 476 175 HOH HOH A . E 4 HOH 176 477 176 HOH HOH A . E 4 HOH 177 478 177 HOH HOH A . E 4 HOH 178 479 178 HOH HOH A . E 4 HOH 179 480 179 HOH HOH A . E 4 HOH 180 481 180 HOH HOH A . E 4 HOH 181 482 181 HOH HOH A . E 4 HOH 182 483 182 HOH HOH A . E 4 HOH 183 484 183 HOH HOH A . E 4 HOH 184 485 184 HOH HOH A . E 4 HOH 185 486 185 HOH HOH A . E 4 HOH 186 487 186 HOH HOH A . E 4 HOH 187 488 187 HOH HOH A . E 4 HOH 188 489 188 HOH HOH A . E 4 HOH 189 490 189 HOH HOH A . E 4 HOH 190 491 190 HOH HOH A . E 4 HOH 191 492 191 HOH HOH A . E 4 HOH 192 493 192 HOH HOH A . E 4 HOH 193 494 193 HOH HOH A . E 4 HOH 194 495 194 HOH HOH A . E 4 HOH 195 496 195 HOH HOH A . E 4 HOH 196 497 196 HOH HOH A . E 4 HOH 197 498 197 HOH HOH A . E 4 HOH 198 499 198 HOH HOH A . E 4 HOH 199 500 199 HOH HOH A . E 4 HOH 200 501 200 HOH HOH A . E 4 HOH 201 502 201 HOH HOH A . E 4 HOH 202 503 202 HOH HOH A . E 4 HOH 203 504 203 HOH HOH A . E 4 HOH 204 505 204 HOH HOH A . E 4 HOH 205 506 205 HOH HOH A . E 4 HOH 206 507 206 HOH HOH A . E 4 HOH 207 508 207 HOH HOH A . E 4 HOH 208 509 208 HOH HOH A . E 4 HOH 209 510 209 HOH HOH A . E 4 HOH 210 511 210 HOH HOH A . E 4 HOH 211 512 211 HOH HOH A . E 4 HOH 212 513 212 HOH HOH A . E 4 HOH 213 514 213 HOH HOH A . E 4 HOH 214 515 214 HOH HOH A . E 4 HOH 215 516 215 HOH HOH A . E 4 HOH 216 517 216 HOH HOH A . E 4 HOH 217 518 217 HOH HOH A . E 4 HOH 218 519 218 HOH HOH A . E 4 HOH 219 520 219 HOH HOH A . E 4 HOH 220 521 220 HOH HOH A . E 4 HOH 221 522 221 HOH HOH A . E 4 HOH 222 523 222 HOH HOH A . E 4 HOH 223 524 223 HOH HOH A . E 4 HOH 224 525 224 HOH HOH A . E 4 HOH 225 526 225 HOH HOH A . E 4 HOH 226 527 226 HOH HOH A . E 4 HOH 227 528 227 HOH HOH A . E 4 HOH 228 529 228 HOH HOH A . E 4 HOH 229 530 229 HOH HOH A . E 4 HOH 230 531 230 HOH HOH A . E 4 HOH 231 532 231 HOH HOH A . E 4 HOH 232 533 232 HOH HOH A . E 4 HOH 233 534 233 HOH HOH A . E 4 HOH 234 535 234 HOH HOH A . E 4 HOH 235 536 235 HOH HOH A . E 4 HOH 236 537 236 HOH HOH A . E 4 HOH 237 538 237 HOH HOH A . E 4 HOH 238 539 238 HOH HOH A . E 4 HOH 239 540 239 HOH HOH A . E 4 HOH 240 541 240 HOH HOH A . E 4 HOH 241 542 241 HOH HOH A . E 4 HOH 242 543 242 HOH HOH A . E 4 HOH 243 544 243 HOH HOH A . E 4 HOH 244 545 244 HOH HOH A . E 4 HOH 245 546 245 HOH HOH A . E 4 HOH 246 547 246 HOH HOH A . E 4 HOH 247 548 247 HOH HOH A . E 4 HOH 248 549 248 HOH HOH A . E 4 HOH 249 550 249 HOH HOH A . E 4 HOH 250 551 250 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 454 ? 1_555 NA ? B NA . ? A NA 300 ? 1_555 O A E HOH . ? A HOH 512 ? 1_555 113.8 ? 2 O B E HOH . ? A HOH 515 ? 1_555 NA ? C NA . ? A NA 301 ? 1_555 O ? E HOH . ? A HOH 550 ? 1_555 119.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-17 2 'Structure model' 1 1 2008-04-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 7 5 'Structure model' '_struct_conn.pdbx_dist_value' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 10 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 5 'Structure model' '_struct_ref_seq_dif.details' 12 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;Heterogen All-trans retinal (ligand code RET) formed a Protonated Schiff Base (PSB) with Lys 132 and converted into all-trans axeropthene (ligand code AZE) ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 29 ? ? CZ A ARG 29 ? ? NH1 A ARG 29 ? ? 123.48 120.30 3.18 0.50 N 2 1 NE A ARG 29 ? ? CZ A ARG 29 ? ? NH2 A ARG 29 ? ? 117.02 120.30 -3.28 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 73 ? ? -151.47 -150.68 2 1 ASP A 126 ? ? 50.65 -121.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 30 ? CG ? A LYS 30 CG 2 1 Y 1 A LYS 30 ? CD ? A LYS 30 CD 3 1 Y 1 A LYS 30 ? CE ? A LYS 30 CE 4 1 Y 1 A LYS 30 ? NZ ? A LYS 30 NZ 5 1 Y 1 A LYS 98 ? CG ? A LYS 98 CG 6 1 Y 1 A LYS 98 ? CD ? A LYS 98 CD 7 1 Y 1 A LYS 98 ? CE ? A LYS 98 CE 8 1 Y 1 A LYS 98 ? NZ ? A LYS 98 NZ 9 1 Y 1 A LYS 101 ? CG ? A LYS 101 CG 10 1 Y 1 A LYS 101 ? CD ? A LYS 101 CD 11 1 Y 1 A LYS 101 ? CE ? A LYS 101 CE 12 1 Y 1 A LYS 101 ? NZ ? A LYS 101 NZ 13 1 Y 1 A GLU 103 ? CG ? A GLU 103 CG 14 1 Y 1 A GLU 103 ? CD ? A GLU 103 CD 15 1 Y 1 A GLU 103 ? OE1 ? A GLU 103 OE1 16 1 Y 1 A GLU 103 ? OE2 ? A GLU 103 OE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'ALL-TRANS AXEROPHTHENE' AZE 4 water HOH #