HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-MAR-06 2G84 TITLE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE ZINC-BINDING REGION FROM TITLE 2 NITROSOMONAS EUROPAEA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE ZINC-BINDING REGION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 228410; SOURCE 4 STRAIN: ATCC 19718; SOURCE 5 GENE: NE0047; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE, ZINC-BINDING REGION, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,T.SKARINA,O.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 06-DEC-23 2G84 1 LINK REVDAT 4 10-MAR-21 2G84 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2G84 1 VERSN REVDAT 2 24-FEB-09 2G84 1 VERSN REVDAT 1 04-APR-06 2G84 0 JRNL AUTH J.OSIPIUK,T.SKARINA,O.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF CYTIDINE AND DEOXYCYTIDYLATE JRNL TITL 2 DEAMINASE ZINC-BINDING REGION FROM NITROSOMONAS EUROPAEA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 54567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2976 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4090 ; 1.536 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;31.960 ;23.657 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;12.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2340 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1567 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2089 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 299 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.130 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.289 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1934 ; 1.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3107 ; 2.303 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1066 ; 3.148 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 957 ; 4.648 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3000 ; 1.747 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 425 ; 6.349 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2902 ; 4.407 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97956 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54643 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 25% PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.17700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.18500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.89450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.18500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.17700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.89450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL UNIT OF THIS REMARK 300 PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 190 REMARK 465 VAL A 191 REMARK 465 HIS A 192 REMARK 465 LYS A 193 REMARK 465 GLY A 194 REMARK 465 SER A 195 REMARK 465 ASN B 181 REMARK 465 GLY B 182 REMARK 465 VAL B 183 REMARK 465 ILE B 184 REMARK 465 TYR B 185 REMARK 465 ASN B 186 REMARK 465 ALA B 187 REMARK 465 ARG B 188 REMARK 465 CYS B 189 REMARK 465 GLY B 190 REMARK 465 VAL B 191 REMARK 465 HIS B 192 REMARK 465 LYS B 193 REMARK 465 GLY B 194 REMARK 465 SER B 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 66 O HOH B 610 2.14 REMARK 500 O HOH B 553 O HOH B 708 2.14 REMARK 500 O HOH A 590 O HOH A 717 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 590 O HOH A 716 1655 1.94 REMARK 500 O HOH A 590 O HOH A 723 1655 2.01 REMARK 500 O HOH A 590 O HOH A 708 1655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 130 -80.67 -100.18 REMARK 500 ALA B 43 31.40 -99.69 REMARK 500 ALA B 130 -83.53 -98.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 676 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH B 687 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 ND1 REMARK 620 2 CYS A 112 SG 105.5 REMARK 620 3 CYS A 115 SG 111.8 117.4 REMARK 620 4 HOH A 714 O 111.0 103.2 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 77 ND1 REMARK 620 2 CYS B 112 SG 105.7 REMARK 620 3 CYS B 115 SG 111.2 117.9 REMARK 620 4 HOH B 703 O 110.9 104.0 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 161 O REMARK 620 2 HOH B 519 O 95.4 REMARK 620 3 HOH B 669 O 85.3 94.9 REMARK 620 4 HOH B 698 O 80.9 76.6 162.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5873 RELATED DB: TARGETDB DBREF 2G84 A 1 193 UNP Q82Y41 Q82Y41_NITEU 1 193 DBREF 2G84 B 1 193 UNP Q82Y41 Q82Y41_NITEU 1 193 SEQADV 2G84 GLY A -1 UNP Q82Y41 CLONING ARTIFACT SEQADV 2G84 HIS A 0 UNP Q82Y41 CLONING ARTIFACT SEQADV 2G84 GLY A 194 UNP Q82Y41 CLONING ARTIFACT SEQADV 2G84 SER A 195 UNP Q82Y41 CLONING ARTIFACT SEQADV 2G84 GLY B -1 UNP Q82Y41 CLONING ARTIFACT SEQADV 2G84 HIS B 0 UNP Q82Y41 CLONING ARTIFACT SEQADV 2G84 GLY B 194 UNP Q82Y41 CLONING ARTIFACT SEQADV 2G84 SER B 195 UNP Q82Y41 CLONING ARTIFACT SEQRES 1 A 197 GLY HIS MET ASN ASP ALA LEU HIS ILE GLY LEU PRO PRO SEQRES 2 A 197 PHE LEU VAL GLN ALA ASN ASN GLU PRO ARG VAL LEU ALA SEQRES 3 A 197 ALA PRO GLU ALA ARG MET GLY TYR VAL LEU GLU LEU VAL SEQRES 4 A 197 ARG ALA ASN ILE ALA ALA ASP GLY GLY PRO PHE ALA ALA SEQRES 5 A 197 ALA VAL PHE GLU ARG ASP SER GLY LEU LEU ILE ALA ALA SEQRES 6 A 197 GLY THR ASN ARG VAL VAL PRO GLY ARG CYS SER ALA ALA SEQRES 7 A 197 HIS ALA GLU ILE LEU ALA LEU SER LEU ALA GLN ALA LYS SEQRES 8 A 197 LEU ASP THR HIS ASP LEU SER ALA ASP GLY LEU PRO ALA SEQRES 9 A 197 CYS GLU LEU VAL THR SER ALA GLU PRO CYS VAL MET CYS SEQRES 10 A 197 PHE GLY ALA VAL ILE TRP SER GLY VAL ARG SER LEU VAL SEQRES 11 A 197 CYS ALA ALA ARG SER ASP ASP VAL GLU ALA ILE GLY PHE SEQRES 12 A 197 ASP GLU GLY PRO ARG PRO GLU ASN TRP MET GLY GLY LEU SEQRES 13 A 197 GLU ALA ARG GLY ILE THR VAL THR THR GLY LEU LEU ARG SEQRES 14 A 197 ASP ALA ALA CYS ALA LEU LEU ARG GLU TYR ASN ALA CYS SEQRES 15 A 197 ASN GLY VAL ILE TYR ASN ALA ARG CYS GLY VAL HIS LYS SEQRES 16 A 197 GLY SER SEQRES 1 B 197 GLY HIS MET ASN ASP ALA LEU HIS ILE GLY LEU PRO PRO SEQRES 2 B 197 PHE LEU VAL GLN ALA ASN ASN GLU PRO ARG VAL LEU ALA SEQRES 3 B 197 ALA PRO GLU ALA ARG MET GLY TYR VAL LEU GLU LEU VAL SEQRES 4 B 197 ARG ALA ASN ILE ALA ALA ASP GLY GLY PRO PHE ALA ALA SEQRES 5 B 197 ALA VAL PHE GLU ARG ASP SER GLY LEU LEU ILE ALA ALA SEQRES 6 B 197 GLY THR ASN ARG VAL VAL PRO GLY ARG CYS SER ALA ALA SEQRES 7 B 197 HIS ALA GLU ILE LEU ALA LEU SER LEU ALA GLN ALA LYS SEQRES 8 B 197 LEU ASP THR HIS ASP LEU SER ALA ASP GLY LEU PRO ALA SEQRES 9 B 197 CYS GLU LEU VAL THR SER ALA GLU PRO CYS VAL MET CYS SEQRES 10 B 197 PHE GLY ALA VAL ILE TRP SER GLY VAL ARG SER LEU VAL SEQRES 11 B 197 CYS ALA ALA ARG SER ASP ASP VAL GLU ALA ILE GLY PHE SEQRES 12 B 197 ASP GLU GLY PRO ARG PRO GLU ASN TRP MET GLY GLY LEU SEQRES 13 B 197 GLU ALA ARG GLY ILE THR VAL THR THR GLY LEU LEU ARG SEQRES 14 B 197 ASP ALA ALA CYS ALA LEU LEU ARG GLU TYR ASN ALA CYS SEQRES 15 B 197 ASN GLY VAL ILE TYR ASN ALA ARG CYS GLY VAL HIS LYS SEQRES 16 B 197 GLY SER HET ZN A 506 1 HET EDO A 501 4 HET BME A 504 4 HET ZN B 507 1 HET NA B 508 1 HET EDO B 502 4 HET EDO B 503 4 HET BME B 505 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM BME BETA-MERCAPTOETHANOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 5 BME 2(C2 H6 O S) FORMUL 7 NA NA 1+ FORMUL 11 HOH *422(H2 O) HELIX 1 1 PRO A 10 GLU A 19 1 10 HELIX 2 2 ALA A 25 ALA A 43 1 19 HELIX 3 3 HIS A 77 ASP A 91 1 15 HELIX 4 4 CYS A 112 GLY A 123 1 12 HELIX 5 5 ARG A 132 ILE A 139 1 8 HELIX 6 6 ASN A 149 ARG A 157 1 9 HELIX 7 7 LEU A 166 ASN A 181 1 16 HELIX 8 8 PRO B 10 GLU B 19 1 10 HELIX 9 9 ALA B 25 ALA B 43 1 19 HELIX 10 10 HIS B 77 ASP B 91 1 15 HELIX 11 11 CYS B 112 GLY B 123 1 12 HELIX 12 12 ARG B 132 ALA B 138 1 7 HELIX 13 13 ASN B 149 ARG B 157 1 9 HELIX 14 14 LEU B 166 CYS B 180 1 15 SHEET 1 A 2 ALA A 4 GLY A 8 0 SHEET 2 A 2 ALA B 4 GLY B 8 -1 O LEU B 5 N ILE A 7 SHEET 1 B 5 LEU A 60 THR A 65 0 SHEET 2 B 5 ALA A 49 GLU A 54 -1 N VAL A 52 O ILE A 61 SHEET 3 B 5 CYS A 103 ALA A 109 -1 O VAL A 106 N ALA A 51 SHEET 4 B 5 SER A 126 ALA A 131 1 O VAL A 128 N THR A 107 SHEET 5 B 5 THR A 160 THR A 162 1 O THR A 162 N CYS A 129 SHEET 1 C 5 LEU B 60 THR B 65 0 SHEET 2 C 5 ALA B 49 GLU B 54 -1 N VAL B 52 O ILE B 61 SHEET 3 C 5 CYS B 103 ALA B 109 -1 O GLU B 104 N PHE B 53 SHEET 4 C 5 SER B 126 ALA B 131 1 O VAL B 128 N THR B 107 SHEET 5 C 5 THR B 160 THR B 162 1 O THR B 162 N CYS B 129 SSBOND 1 CYS A 180 CYS A 189 1555 1555 2.06 LINK SG CYS A 171 S2 BME A 504 1555 1555 1.99 LINK ND1 HIS A 77 ZN ZN A 506 1555 1555 2.06 LINK SG CYS A 112 ZN ZN A 506 1555 1555 2.34 LINK SG CYS A 115 ZN ZN A 506 1555 1555 2.28 LINK ZN ZN A 506 O HOH A 714 1555 1555 2.08 LINK ND1 HIS B 77 ZN ZN B 507 1555 1555 2.05 LINK SG CYS B 112 ZN ZN B 507 1555 1555 2.33 LINK SG CYS B 115 ZN ZN B 507 1555 1555 2.26 LINK O VAL B 161 NA NA B 508 1555 1555 2.22 LINK ZN ZN B 507 O HOH B 703 1555 1555 2.05 LINK NA NA B 508 O HOH B 519 1555 1555 2.24 LINK NA NA B 508 O HOH B 669 1555 1555 2.80 LINK NA NA B 508 O HOH B 698 1555 1555 2.41 SITE 1 AC1 4 HIS A 77 CYS A 112 CYS A 115 HOH A 714 SITE 1 AC2 4 HIS B 77 CYS B 112 CYS B 115 HOH B 703 SITE 1 AC3 5 GLU B 155 VAL B 161 HOH B 519 HOH B 669 SITE 2 AC3 5 HOH B 698 SITE 1 AC4 8 PHE A 48 GLU A 79 GLU A 110 GLU A 143 SITE 2 AC4 8 HOH A 532 HOH A 545 HOH A 617 HOH A 714 SITE 1 AC5 5 GLY B 8 ARG B 67 PRO B 70 GLY B 71 SITE 2 AC5 5 HOH B 675 SITE 1 AC6 8 PHE B 48 GLU B 79 GLU B 110 GLU B 143 SITE 2 AC6 8 HOH B 524 HOH B 533 HOH B 630 HOH B 703 SITE 1 AC7 6 ASP A 135 CYS A 171 ARG A 175 HOH A 675 SITE 2 AC7 6 HOH A 678 HOH A 700 SITE 1 AC8 5 ASP B 135 CYS B 171 HOH B 553 HOH B 569 SITE 2 AC8 5 HOH B 708 CRYST1 38.354 73.789 110.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009060 0.00000