HEADER HYDROLASE/RNA/DNA 02-MAR-06 2G8H TITLE B. HALODURANS RNASE H CATALYTIC DOMAIN D192N MUTANT IN COMPLEX WITH TITLE 2 MG2+ AND RNA/DNA HYBRID (NON-P NICK AT THE ACTIVE SITE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*UP*CP*GP*AP*CP*A)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*AP*TP*GP*TP*CP*G)-3'; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RIBONUCLEASE H; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: BH-RNASE HC; COMPND 13 SYNONYM: RNASE H; COMPND 14 EC: 3.1.26.4; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 7 ORGANISM_TAXID: 86665; SOURCE 8 GENE: RNHA; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS RNASE H, RIBONUCLEASE H, RNA/DNA HYBRID, HYDROLASE-RNA-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.NOWOTNY,W.YANG REVDAT 5 30-AUG-23 2G8H 1 REMARK REVDAT 4 20-OCT-21 2G8H 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2G8H 1 VERSN REVDAT 2 16-MAY-06 2G8H 1 JRNL REVDAT 1 25-APR-06 2G8H 0 JRNL AUTH M.NOWOTNY,W.YANG JRNL TITL STEPWISE ANALYSES OF METAL IONS IN RNASE H CATALYSIS FROM JRNL TITL 2 SUBSTRATE DESTABILIZATION TO PRODUCT RELEASE. JRNL REF EMBO J. V. 25 1924 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16601679 JRNL DOI 10.1038/SJ.EMBOJ.7601076 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1513 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1110 REMARK 3 NUCLEIC ACID ATOMS : 245 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.120 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1ZBI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% MPD, 0.1M TRIS PH 7.0, 0.2 M NACL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.22050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.22050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 55 REMARK 465 SER A 56 REMARK 465 HIS A 57 REMARK 465 MET A 58 REMARK 465 ALA A 59 REMARK 465 LYS A 60 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 122 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 174 149.30 -173.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 RESIDUES 401 - 406 MAKE UP A POLYMER OF VANADATE IONS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 6 O3' REMARK 620 2 HOH B 55 O 69.2 REMARK 620 3 ASP A 71 OD1 144.1 75.9 REMARK 620 4 GLU A 109 OE2 89.4 98.8 103.8 REMARK 620 5 ASP A 132 OD2 90.4 108.3 93.1 150.9 REMARK 620 6 ASP A 132 OD1 94.6 155.3 115.2 99.6 51.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 55 O REMARK 620 2 ASP A 71 OD2 92.5 REMARK 620 3 ASN A 192 OD1 178.3 86.1 REMARK 620 4 HOH A 457 O 100.2 78.2 78.6 REMARK 620 5 HOH A 563 O 100.8 166.6 80.7 100.7 REMARK 620 6 HOH A 565 O 93.9 94.8 87.1 164.5 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 402 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VO4 A 401 O3 REMARK 620 2 VO4 A 402 O1 106.6 REMARK 620 3 VO4 A 402 O2 125.1 98.3 REMARK 620 4 VO4 A 402 O3 100.6 109.1 116.4 REMARK 620 5 VO4 A 403 V 80.7 134.8 113.9 28.4 REMARK 620 6 VO4 A 405 O1 148.3 102.8 60.6 57.9 70.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 401 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VO4 A 402 V REMARK 620 2 VO4 A 401 O1 84.0 REMARK 620 3 VO4 A 401 O2 145.2 112.4 REMARK 620 4 VO4 A 401 O3 29.6 99.7 115.6 REMARK 620 5 VO4 A 401 O4 81.0 126.6 108.8 91.6 REMARK 620 6 VO4 A 403 V 60.0 105.2 135.2 79.8 26.4 REMARK 620 7 VO4 A 406 V 93.5 61.7 121.2 123.1 68.4 58.6 REMARK 620 8 VO4 A 406 O1 126.7 75.8 87.8 155.6 73.3 78.4 33.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 403 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VO4 A 401 O4 REMARK 620 2 VO4 A 403 O1 96.3 REMARK 620 3 VO4 A 403 O2 116.3 118.4 REMARK 620 4 VO4 A 402 O3 102.0 127.5 96.5 REMARK 620 5 VO4 A 406 V 70.5 29.3 142.8 118.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 404 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VO4 A 401 O1 REMARK 620 2 VO4 A 404 O1 115.6 REMARK 620 3 VO4 A 404 O2 121.0 123.4 REMARK 620 4 VO4 A 402 O2 107.7 96.8 67.4 REMARK 620 5 VO4 A 406 O2 80.5 134.0 58.9 119.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 406 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VO4 A 401 O1 REMARK 620 2 VO4 A 406 O1 72.8 REMARK 620 3 VO4 A 406 O2 85.7 121.2 REMARK 620 4 VO4 A 401 O4 65.4 65.0 147.9 REMARK 620 5 VO4 A 403 O1 112.6 113.9 124.9 60.8 REMARK 620 6 VO4 A 404 O2 61.9 134.6 54.6 97.4 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 405 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VO4 A 402 O3 REMARK 620 2 VO4 A 405 O1 55.5 REMARK 620 3 VO4 A 405 O2 105.2 104.7 REMARK 620 4 VO4 A 402 O2 61.8 68.4 167.0 REMARK 620 5 VO4 A 403 O1 64.5 111.3 61.2 110.0 REMARK 620 6 VO4 A 404 O2 107.8 130.8 124.4 63.8 95.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZBF RELATED DB: PDB REMARK 900 RELATED ID: 1ZBI RELATED DB: PDB REMARK 900 RELATED ID: 1ZBL RELATED DB: PDB REMARK 900 RELATED ID: 2G8F RELATED DB: PDB DBREF 2G8H A 59 196 UNP Q9KEI9 RNH1_BACHD 59 196 DBREF 2G8H B 1 6 PDB 2G8H 2G8H 1 6 DBREF 2G8H C 1 6 PDB 2G8H 2G8H 1 6 SEQADV 2G8H GLY A 55 UNP Q9KEI9 CLONING ARTIFACT SEQADV 2G8H SER A 56 UNP Q9KEI9 CLONING ARTIFACT SEQADV 2G8H HIS A 57 UNP Q9KEI9 CLONING ARTIFACT SEQADV 2G8H MET A 58 UNP Q9KEI9 CLONING ARTIFACT SEQADV 2G8H ASN A 192 UNP Q9KEI9 ASP 192 ENGINEERED MUTATION SEQRES 1 B 6 U C G A C A SEQRES 1 C 6 DA DT DG DT DC DG SEQRES 1 A 142 GLY SER HIS MET ALA LYS GLU GLU ILE ILE TRP GLU SER SEQRES 2 A 142 LEU SER VAL ASP VAL GLY SER GLN GLY ASN PRO GLY ILE SEQRES 3 A 142 VAL GLU TYR LYS GLY VAL ASP THR LYS THR GLY GLU VAL SEQRES 4 A 142 LEU PHE GLU ARG GLU PRO ILE PRO ILE GLY THR ASN ASN SEQRES 5 A 142 MET GLY GLU PHE LEU ALA ILE VAL HIS GLY LEU ARG TYR SEQRES 6 A 142 LEU LYS GLU ARG ASN SER ARG LYS PRO ILE TYR SER ASP SEQRES 7 A 142 SER GLN THR ALA ILE LYS TRP VAL LYS ASP LYS LYS ALA SEQRES 8 A 142 LYS SER THR LEU VAL ARG ASN GLU GLU THR ALA LEU ILE SEQRES 9 A 142 TRP LYS LEU VAL ASP GLU ALA GLU GLU TRP LEU ASN THR SEQRES 10 A 142 HIS THR TYR GLU THR PRO ILE LEU LYS TRP GLN THR ASP SEQRES 11 A 142 LYS TRP GLY GLU ILE LYS ALA ASN TYR GLY ARG LYS HET MG A 301 1 HET MG A 302 1 HET VO4 A 401 5 HET VO4 A 402 4 HET VO4 A 403 3 HET VO4 A 404 3 HET VO4 A 405 3 HET VO4 A 406 3 HETNAM MG MAGNESIUM ION HETNAM VO4 VANADATE ION FORMUL 4 MG 2(MG 2+) FORMUL 6 VO4 6(O4 V 3-) FORMUL 12 HOH *235(H2 O) HELIX 1 1 THR A 104 ARG A 123 1 20 HELIX 2 2 SER A 133 LYS A 143 1 11 HELIX 3 3 ASN A 152 GLU A 154 5 3 HELIX 4 4 THR A 155 ASN A 170 1 16 HELIX 5 5 GLN A 182 GLY A 187 1 6 SHEET 1 A 3 VAL A 93 GLU A 96 0 SHEET 2 A 3 GLY A 79 ASP A 87 -1 N GLY A 85 O PHE A 95 SHEET 3 A 3 ILE A 100 GLY A 103 -1 O ILE A 100 N VAL A 81 SHEET 1 B 5 VAL A 93 GLU A 96 0 SHEET 2 B 5 GLY A 79 ASP A 87 -1 N GLY A 85 O PHE A 95 SHEET 3 B 5 LEU A 68 GLN A 75 -1 N SER A 69 O VAL A 86 SHEET 4 B 5 ILE A 129 SER A 131 1 O TYR A 130 N LEU A 68 SHEET 5 B 5 ILE A 178 LYS A 180 1 O LEU A 179 N ILE A 129 LINK O3' A B 6 MG MG A 301 1555 1555 2.32 LINK O HOH B 55 MG MG A 301 1555 1555 1.97 LINK O HOH B 55 MG MG A 302 1555 1555 1.92 LINK OD1 ASP A 71 MG MG A 301 1555 1555 2.08 LINK OD2 ASP A 71 MG MG A 302 1555 1555 2.19 LINK OE2 GLU A 109 MG MG A 301 1555 1555 2.14 LINK OD2 ASP A 132 MG MG A 301 1555 1555 2.72 LINK OD1 ASP A 132 MG MG A 301 1555 1555 2.20 LINK OD1 ASN A 192 MG MG A 302 1555 1555 2.34 LINK MG MG A 302 O HOH A 457 1555 1555 2.02 LINK MG MG A 302 O HOH A 563 1555 1555 2.17 LINK MG MG A 302 O HOH A 565 1555 1555 2.00 LINK O3 VO4 A 401 V VO4 A 402 1555 1555 1.73 LINK V VO4 A 401 V VO4 A 402 1555 1555 3.00 LINK O4 VO4 A 401 V VO4 A 403 1555 1555 1.71 LINK V VO4 A 401 V VO4 A 403 1555 1555 3.06 LINK O1 VO4 A 401 V VO4 A 404 1555 1555 1.70 LINK V VO4 A 401 V VO4 A 406 1555 1555 3.07 LINK V VO4 A 401 O1 VO4 A 406 1555 1555 2.62 LINK O1 VO4 A 401 V VO4 A 406 1555 1555 2.72 LINK O4 VO4 A 401 V VO4 A 406 1555 1555 2.92 LINK O3 VO4 A 402 V VO4 A 403 1555 1555 1.73 LINK V VO4 A 402 V VO4 A 403 1555 1555 3.03 LINK O2 VO4 A 402 V VO4 A 404 1555 1555 2.49 LINK V VO4 A 402 O1 VO4 A 405 1555 1555 2.91 LINK O3 VO4 A 402 V VO4 A 405 1555 1555 3.00 LINK O2 VO4 A 402 V VO4 A 405 1555 1555 2.63 LINK O1 VO4 A 403 V VO4 A 405 1555 1555 2.81 LINK O1 VO4 A 403 V VO4 A 406 1555 1555 1.71 LINK V VO4 A 403 V VO4 A 406 1555 1555 3.00 LINK O2 VO4 A 404 V VO4 A 405 1555 1555 1.71 LINK V VO4 A 404 O2 VO4 A 406 1555 1555 2.88 LINK O2 VO4 A 404 V VO4 A 406 1555 1555 3.04 CISPEP 1 ASN A 77 PRO A 78 0 0.01 SITE 1 AC1 6 ASP A 71 GLU A 109 ASP A 132 MG A 302 SITE 2 AC1 6 A B 6 HOH B 55 SITE 1 AC2 8 ASP A 71 ASN A 192 MG A 301 HOH A 457 SITE 2 AC2 8 HOH A 563 HOH A 565 C B 2 HOH B 55 SITE 1 AC3 6 TRP A 168 HIS A 172 VO4 A 402 VO4 A 403 SITE 2 AC3 6 VO4 A 404 VO4 A 406 SITE 1 AC4 7 LYS A 121 GLU A 122 TRP A 168 VO4 A 401 SITE 2 AC4 7 VO4 A 403 VO4 A 404 VO4 A 405 SITE 1 AC5 8 PRO A 99 VO4 A 401 VO4 A 402 VO4 A 404 SITE 2 AC5 8 VO4 A 405 VO4 A 406 HOH A 517 HOH A 571 SITE 1 AC6 7 GLU A 122 LYS A 144 VO4 A 401 VO4 A 402 SITE 2 AC6 7 VO4 A 403 VO4 A 405 VO4 A 406 SITE 1 AC7 5 VO4 A 402 VO4 A 403 VO4 A 404 VO4 A 406 SITE 2 AC7 5 HOH A 517 SITE 1 AC8 5 LYS A 144 VO4 A 401 VO4 A 403 VO4 A 404 SITE 2 AC8 5 VO4 A 405 CRYST1 82.441 36.964 61.810 90.00 96.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012130 0.000000 0.001356 0.00000 SCALE2 0.000000 0.027053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016279 0.00000