data_2G9C # _entry.id 2G9C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2G9C pdb_00002g9c 10.2210/pdb2g9c/pdb NDB UR0095 ? ? RCSB RCSB036851 ? ? WWPDB D_1000036851 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-21 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2G9C _pdbx_database_status.recvd_initial_deposition_date 2006-03-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gilbert, S.D.' 1 'Mediatore, S.J.' 2 'Batey, R.T.' 3 # _citation.id primary _citation.title 'Modified pyrimidines specifically bind the purine riboswitch.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 128 _citation.page_first 14214 _citation.page_last 14215 _citation.year 2006 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17076468 _citation.pdbx_database_id_DOI 10.1021/ja063645t # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gilbert, S.D.' 1 ? primary 'Mediatore, S.J.' 2 ? primary 'Batey, R.T.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'guanine riboswitch' 21507.768 1 ? C74U ? 'Adenine responsive mutant guanine riboswitch' 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 12 ? ? ? ? 4 non-polymer syn PYRIMIDINE-2,4,6-TRIAMINE 125.132 1 ? ? ? ? 5 water nat water 18.015 353 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'COBALT HEXAMMINE(III)' NCO 4 PYRIMIDINE-2,4,6-TRIAMINE 3AY 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 U n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence was engineered based on the guanine riboswitch from the xpt-pbuX gene in Bacillus subtilis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3AY non-polymer . PYRIMIDINE-2,4,6-TRIAMINE ? 'C4 H7 N5' 125.132 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 15 G GUA A . n A 1 2 G 2 16 16 G GUA A . n A 1 3 A 3 17 17 A ADE A . n A 1 4 C 4 18 18 C CYT A . n A 1 5 A 5 19 19 A ADE A . n A 1 6 U 6 20 20 U URI A . n A 1 7 A 7 21 21 A ADE A . n A 1 8 U 8 22 22 U URI A . n A 1 9 A 9 23 23 A ADE A . n A 1 10 A 10 24 24 A ADE A . n A 1 11 U 11 25 25 U URI A . n A 1 12 C 12 26 26 C CYT A . n A 1 13 G 13 27 27 G GUA A . n A 1 14 C 14 28 28 C CYT A . n A 1 15 G 15 29 29 G GUA A . n A 1 16 U 16 30 30 U URI A . n A 1 17 G 17 31 31 G GUA A . n A 1 18 G 18 32 32 G GUA A . n A 1 19 A 19 33 33 A ADE A . n A 1 20 U 20 34 34 U URI A . n A 1 21 A 21 35 35 A ADE A . n A 1 22 U 22 36 36 U URI A . n A 1 23 G 23 37 37 G GUA A . n A 1 24 G 24 38 38 G GUA A . n A 1 25 C 25 39 39 C CYT A . n A 1 26 A 26 40 40 A ADE A . n A 1 27 C 27 41 41 C CYT A . n A 1 28 G 28 42 42 G GUA A . n A 1 29 C 29 43 43 C CYT A . n A 1 30 A 30 44 44 A ADE A . n A 1 31 A 31 45 45 A ADE A . n A 1 32 G 32 46 46 G GUA A . n A 1 33 U 33 47 47 U URI A . n A 1 34 U 34 48 48 U URI A . n A 1 35 U 35 49 49 U URI A . n A 1 36 C 36 50 50 C CYT A . n A 1 37 U 37 51 51 U URI A . n A 1 38 A 38 52 52 A ADE A . n A 1 39 C 39 53 53 C CYT A . n A 1 40 C 40 54 54 C CYT A . n A 1 41 G 41 55 55 G GUA A . n A 1 42 G 42 56 56 G GUA A . n A 1 43 G 43 57 57 G GUA A . n A 1 44 C 44 58 58 C CYT A . n A 1 45 A 45 59 59 A ADE A . n A 1 46 C 46 60 60 C CYT A . n A 1 47 C 47 61 61 C CYT A . n A 1 48 G 48 62 62 G GUA A . n A 1 49 U 49 63 63 U URI A . n A 1 50 A 50 64 64 A ADE A . n A 1 51 A 51 65 65 A ADE A . n A 1 52 A 52 66 66 A ADE A . n A 1 53 U 53 67 67 U URI A . n A 1 54 G 54 68 68 G GUA A . n A 1 55 U 55 69 69 U URI A . n A 1 56 C 56 70 70 C CYT A . n A 1 57 C 57 71 71 C CYT A . n A 1 58 G 58 72 72 G GUA A . n A 1 59 A 59 73 73 A ADE A . n A 1 60 U 60 74 74 U URI A . n A 1 61 U 61 75 75 U URI A . n A 1 62 A 62 76 76 A ADE A . n A 1 63 U 63 77 77 U URI A . n A 1 64 G 64 78 78 G GUA A . n A 1 65 U 65 79 79 U URI A . n A 1 66 C 66 80 80 C CYT A . n A 1 67 C 67 81 81 C CYT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 96 96 ACT ACT A . C 3 NCO 1 101 101 NCO NCO A . D 3 NCO 1 102 102 NCO NCO A . E 3 NCO 1 103 103 NCO NCO A . F 3 NCO 1 104 104 NCO NCO A . G 3 NCO 1 105 105 NCO NCO A . H 3 NCO 1 106 106 NCO NCO A . I 3 NCO 1 107 107 NCO NCO A . J 3 NCO 1 108 108 NCO NCO A . K 3 NCO 1 109 109 NCO NCO A . L 3 NCO 1 110 110 NCO NCO A . M 3 NCO 1 111 111 NCO NCO A . N 3 NCO 1 112 112 NCO NCO A . O 4 3AY 1 91 91 3AY 3AY A . P 5 HOH 1 300 300 HOH HOH A . P 5 HOH 2 301 301 HOH HOH A . P 5 HOH 3 302 302 HOH HOH A . P 5 HOH 4 303 303 HOH HOH A . P 5 HOH 5 304 304 HOH HOH A . P 5 HOH 6 305 305 HOH HOH A . P 5 HOH 7 306 306 HOH HOH A . P 5 HOH 8 307 307 HOH HOH A . P 5 HOH 9 308 308 HOH HOH A . P 5 HOH 10 309 309 HOH HOH A . P 5 HOH 11 310 310 HOH HOH A . P 5 HOH 12 311 311 HOH HOH A . P 5 HOH 13 312 312 HOH HOH A . P 5 HOH 14 313 313 HOH HOH A . P 5 HOH 15 314 314 HOH HOH A . P 5 HOH 16 315 315 HOH HOH A . P 5 HOH 17 316 316 HOH HOH A . P 5 HOH 18 317 317 HOH HOH A . P 5 HOH 19 318 318 HOH HOH A . P 5 HOH 20 319 319 HOH HOH A . P 5 HOH 21 320 320 HOH HOH A . P 5 HOH 22 321 321 HOH HOH A . P 5 HOH 23 322 322 HOH HOH A . P 5 HOH 24 323 323 HOH HOH A . P 5 HOH 25 324 324 HOH HOH A . P 5 HOH 26 325 325 HOH HOH A . P 5 HOH 27 326 326 HOH HOH A . P 5 HOH 28 327 327 HOH HOH A . P 5 HOH 29 328 328 HOH HOH A . P 5 HOH 30 329 329 HOH HOH A . P 5 HOH 31 330 330 HOH HOH A . P 5 HOH 32 331 331 HOH HOH A . P 5 HOH 33 332 332 HOH HOH A . P 5 HOH 34 333 333 HOH HOH A . P 5 HOH 35 334 334 HOH HOH A . P 5 HOH 36 335 335 HOH HOH A . P 5 HOH 37 336 336 HOH HOH A . P 5 HOH 38 337 337 HOH HOH A . P 5 HOH 39 338 338 HOH HOH A . P 5 HOH 40 339 339 HOH HOH A . P 5 HOH 41 340 340 HOH HOH A . P 5 HOH 42 341 341 HOH HOH A . P 5 HOH 43 342 342 HOH HOH A . P 5 HOH 44 343 343 HOH HOH A . P 5 HOH 45 345 345 HOH HOH A . P 5 HOH 46 346 346 HOH HOH A . P 5 HOH 47 347 347 HOH HOH A . P 5 HOH 48 348 348 HOH HOH A . P 5 HOH 49 350 350 HOH HOH A . P 5 HOH 50 351 351 HOH HOH A . P 5 HOH 51 352 352 HOH HOH A . P 5 HOH 52 353 353 HOH HOH A . P 5 HOH 53 354 354 HOH HOH A . P 5 HOH 54 355 355 HOH HOH A . P 5 HOH 55 356 356 HOH HOH A . P 5 HOH 56 357 357 HOH HOH A . P 5 HOH 57 358 358 HOH HOH A . P 5 HOH 58 359 359 HOH HOH A . P 5 HOH 59 360 360 HOH HOH A . P 5 HOH 60 361 361 HOH HOH A . P 5 HOH 61 362 362 HOH HOH A . P 5 HOH 62 363 363 HOH HOH A . P 5 HOH 63 364 364 HOH HOH A . P 5 HOH 64 365 365 HOH HOH A . P 5 HOH 65 366 366 HOH HOH A . P 5 HOH 66 367 367 HOH HOH A . P 5 HOH 67 368 368 HOH HOH A . P 5 HOH 68 369 369 HOH HOH A . P 5 HOH 69 370 370 HOH HOH A . P 5 HOH 70 371 371 HOH HOH A . P 5 HOH 71 372 372 HOH HOH A . P 5 HOH 72 373 373 HOH HOH A . P 5 HOH 73 374 374 HOH HOH A . P 5 HOH 74 375 375 HOH HOH A . P 5 HOH 75 376 376 HOH HOH A . P 5 HOH 76 377 377 HOH HOH A . P 5 HOH 77 378 378 HOH HOH A . P 5 HOH 78 379 379 HOH HOH A . P 5 HOH 79 380 380 HOH HOH A . P 5 HOH 80 381 381 HOH HOH A . P 5 HOH 81 382 382 HOH HOH A . P 5 HOH 82 383 383 HOH HOH A . P 5 HOH 83 384 384 HOH HOH A . P 5 HOH 84 385 385 HOH HOH A . P 5 HOH 85 386 386 HOH HOH A . P 5 HOH 86 387 387 HOH HOH A . P 5 HOH 87 388 388 HOH HOH A . P 5 HOH 88 389 389 HOH HOH A . P 5 HOH 89 390 390 HOH HOH A . P 5 HOH 90 391 391 HOH HOH A . P 5 HOH 91 392 392 HOH HOH A . P 5 HOH 92 393 393 HOH HOH A . P 5 HOH 93 394 394 HOH HOH A . P 5 HOH 94 395 395 HOH HOH A . P 5 HOH 95 396 396 HOH HOH A . P 5 HOH 96 397 397 HOH HOH A . P 5 HOH 97 398 398 HOH HOH A . P 5 HOH 98 399 399 HOH HOH A . P 5 HOH 99 400 400 HOH HOH A . P 5 HOH 100 401 401 HOH HOH A . P 5 HOH 101 402 402 HOH HOH A . P 5 HOH 102 403 403 HOH HOH A . P 5 HOH 103 404 404 HOH HOH A . P 5 HOH 104 405 405 HOH HOH A . P 5 HOH 105 406 406 HOH HOH A . P 5 HOH 106 407 407 HOH HOH A . P 5 HOH 107 408 408 HOH HOH A . P 5 HOH 108 409 409 HOH HOH A . P 5 HOH 109 410 410 HOH HOH A . P 5 HOH 110 411 411 HOH HOH A . P 5 HOH 111 412 412 HOH HOH A . P 5 HOH 112 413 413 HOH HOH A . P 5 HOH 113 414 414 HOH HOH A . P 5 HOH 114 415 415 HOH HOH A . P 5 HOH 115 416 416 HOH HOH A . P 5 HOH 116 417 417 HOH HOH A . P 5 HOH 117 418 418 HOH HOH A . P 5 HOH 118 419 419 HOH HOH A . P 5 HOH 119 420 420 HOH HOH A . P 5 HOH 120 421 421 HOH HOH A . P 5 HOH 121 422 422 HOH HOH A . P 5 HOH 122 423 423 HOH HOH A . P 5 HOH 123 424 424 HOH HOH A . P 5 HOH 124 425 425 HOH HOH A . P 5 HOH 125 426 426 HOH HOH A . P 5 HOH 126 427 427 HOH HOH A . P 5 HOH 127 428 428 HOH HOH A . P 5 HOH 128 429 429 HOH HOH A . P 5 HOH 129 430 430 HOH HOH A . P 5 HOH 130 431 431 HOH HOH A . P 5 HOH 131 432 432 HOH HOH A . P 5 HOH 132 433 433 HOH HOH A . P 5 HOH 133 434 434 HOH HOH A . P 5 HOH 134 435 435 HOH HOH A . P 5 HOH 135 436 436 HOH HOH A . P 5 HOH 136 437 437 HOH HOH A . P 5 HOH 137 438 438 HOH HOH A . P 5 HOH 138 439 439 HOH HOH A . P 5 HOH 139 440 440 HOH HOH A . P 5 HOH 140 441 441 HOH HOH A . P 5 HOH 141 442 442 HOH HOH A . P 5 HOH 142 443 443 HOH HOH A . P 5 HOH 143 444 444 HOH HOH A . P 5 HOH 144 445 445 HOH HOH A . P 5 HOH 145 446 446 HOH HOH A . P 5 HOH 146 447 447 HOH HOH A . P 5 HOH 147 448 448 HOH HOH A . P 5 HOH 148 449 449 HOH HOH A . P 5 HOH 149 450 450 HOH HOH A . P 5 HOH 150 451 451 HOH HOH A . P 5 HOH 151 452 452 HOH HOH A . P 5 HOH 152 453 453 HOH HOH A . P 5 HOH 153 455 455 HOH HOH A . P 5 HOH 154 456 456 HOH HOH A . P 5 HOH 155 457 457 HOH HOH A . P 5 HOH 156 458 458 HOH HOH A . P 5 HOH 157 459 459 HOH HOH A . P 5 HOH 158 460 460 HOH HOH A . P 5 HOH 159 461 461 HOH HOH A . P 5 HOH 160 462 462 HOH HOH A . P 5 HOH 161 463 463 HOH HOH A . P 5 HOH 162 464 464 HOH HOH A . P 5 HOH 163 465 465 HOH HOH A . P 5 HOH 164 466 466 HOH HOH A . P 5 HOH 165 467 467 HOH HOH A . P 5 HOH 166 468 468 HOH HOH A . P 5 HOH 167 469 469 HOH HOH A . P 5 HOH 168 470 470 HOH HOH A . P 5 HOH 169 471 471 HOH HOH A . P 5 HOH 170 472 472 HOH HOH A . P 5 HOH 171 473 473 HOH HOH A . P 5 HOH 172 474 474 HOH HOH A . P 5 HOH 173 475 475 HOH HOH A . P 5 HOH 174 476 476 HOH HOH A . P 5 HOH 175 477 477 HOH HOH A . P 5 HOH 176 478 478 HOH HOH A . P 5 HOH 177 479 479 HOH HOH A . P 5 HOH 178 480 480 HOH HOH A . P 5 HOH 179 481 481 HOH HOH A . P 5 HOH 180 482 482 HOH HOH A . P 5 HOH 181 483 483 HOH HOH A . P 5 HOH 182 484 484 HOH HOH A . P 5 HOH 183 485 485 HOH HOH A . P 5 HOH 184 486 486 HOH HOH A . P 5 HOH 185 487 487 HOH HOH A . P 5 HOH 186 488 488 HOH HOH A . P 5 HOH 187 489 489 HOH HOH A . P 5 HOH 188 490 490 HOH HOH A . P 5 HOH 189 491 491 HOH HOH A . P 5 HOH 190 492 492 HOH HOH A . P 5 HOH 191 493 493 HOH HOH A . P 5 HOH 192 494 494 HOH HOH A . P 5 HOH 193 495 495 HOH HOH A . P 5 HOH 194 496 496 HOH HOH A . P 5 HOH 195 497 497 HOH HOH A . P 5 HOH 196 498 498 HOH HOH A . P 5 HOH 197 499 499 HOH HOH A . P 5 HOH 198 500 500 HOH HOH A . P 5 HOH 199 501 501 HOH HOH A . P 5 HOH 200 502 502 HOH HOH A . P 5 HOH 201 503 503 HOH HOH A . P 5 HOH 202 504 504 HOH HOH A . P 5 HOH 203 505 505 HOH HOH A . P 5 HOH 204 506 506 HOH HOH A . P 5 HOH 205 507 507 HOH HOH A . P 5 HOH 206 508 508 HOH HOH A . P 5 HOH 207 509 509 HOH HOH A . P 5 HOH 208 510 510 HOH HOH A . P 5 HOH 209 511 511 HOH HOH A . P 5 HOH 210 512 512 HOH HOH A . P 5 HOH 211 513 513 HOH HOH A . P 5 HOH 212 514 514 HOH HOH A . P 5 HOH 213 515 515 HOH HOH A . P 5 HOH 214 516 516 HOH HOH A . P 5 HOH 215 517 517 HOH HOH A . P 5 HOH 216 518 518 HOH HOH A . P 5 HOH 217 519 519 HOH HOH A . P 5 HOH 218 520 520 HOH HOH A . P 5 HOH 219 521 521 HOH HOH A . P 5 HOH 220 522 522 HOH HOH A . P 5 HOH 221 523 523 HOH HOH A . P 5 HOH 222 524 524 HOH HOH A . P 5 HOH 223 525 525 HOH HOH A . P 5 HOH 224 526 526 HOH HOH A . P 5 HOH 225 527 527 HOH HOH A . P 5 HOH 226 528 528 HOH HOH A . P 5 HOH 227 529 529 HOH HOH A . P 5 HOH 228 530 530 HOH HOH A . P 5 HOH 229 531 531 HOH HOH A . P 5 HOH 230 532 532 HOH HOH A . P 5 HOH 231 533 533 HOH HOH A . P 5 HOH 232 534 534 HOH HOH A . P 5 HOH 233 535 535 HOH HOH A . P 5 HOH 234 536 536 HOH HOH A . P 5 HOH 235 537 537 HOH HOH A . P 5 HOH 236 538 538 HOH HOH A . P 5 HOH 237 539 539 HOH HOH A . P 5 HOH 238 540 540 HOH HOH A . P 5 HOH 239 541 541 HOH HOH A . P 5 HOH 240 542 542 HOH HOH A . P 5 HOH 241 543 543 HOH HOH A . P 5 HOH 242 544 544 HOH HOH A . P 5 HOH 243 545 545 HOH HOH A . P 5 HOH 244 546 546 HOH HOH A . P 5 HOH 245 547 547 HOH HOH A . P 5 HOH 246 548 548 HOH HOH A . P 5 HOH 247 549 549 HOH HOH A . P 5 HOH 248 550 550 HOH HOH A . P 5 HOH 249 551 551 HOH HOH A . P 5 HOH 250 552 552 HOH HOH A . P 5 HOH 251 553 553 HOH HOH A . P 5 HOH 252 554 554 HOH HOH A . P 5 HOH 253 555 555 HOH HOH A . P 5 HOH 254 556 556 HOH HOH A . P 5 HOH 255 557 557 HOH HOH A . P 5 HOH 256 558 558 HOH HOH A . P 5 HOH 257 559 559 HOH HOH A . P 5 HOH 258 560 560 HOH HOH A . P 5 HOH 259 561 561 HOH HOH A . P 5 HOH 260 562 562 HOH HOH A . P 5 HOH 261 563 563 HOH HOH A . P 5 HOH 262 564 564 HOH HOH A . P 5 HOH 263 565 565 HOH HOH A . P 5 HOH 264 566 566 HOH HOH A . P 5 HOH 265 567 567 HOH HOH A . P 5 HOH 266 568 568 HOH HOH A . P 5 HOH 267 569 569 HOH HOH A . P 5 HOH 268 570 570 HOH HOH A . P 5 HOH 269 571 571 HOH HOH A . P 5 HOH 270 572 572 HOH HOH A . P 5 HOH 271 573 573 HOH HOH A . P 5 HOH 272 574 574 HOH HOH A . P 5 HOH 273 575 575 HOH HOH A . P 5 HOH 274 576 576 HOH HOH A . P 5 HOH 275 577 577 HOH HOH A . P 5 HOH 276 578 578 HOH HOH A . P 5 HOH 277 579 579 HOH HOH A . P 5 HOH 278 580 580 HOH HOH A . P 5 HOH 279 581 581 HOH HOH A . P 5 HOH 280 582 582 HOH HOH A . P 5 HOH 281 583 583 HOH HOH A . P 5 HOH 282 584 584 HOH HOH A . P 5 HOH 283 585 585 HOH HOH A . P 5 HOH 284 586 586 HOH HOH A . P 5 HOH 285 587 587 HOH HOH A . P 5 HOH 286 588 588 HOH HOH A . P 5 HOH 287 589 589 HOH HOH A . P 5 HOH 288 590 590 HOH HOH A . P 5 HOH 289 591 591 HOH HOH A . P 5 HOH 290 592 592 HOH HOH A . P 5 HOH 291 593 593 HOH HOH A . P 5 HOH 292 594 594 HOH HOH A . P 5 HOH 293 595 595 HOH HOH A . P 5 HOH 294 596 596 HOH HOH A . P 5 HOH 295 597 597 HOH HOH A . P 5 HOH 296 598 598 HOH HOH A . P 5 HOH 297 599 599 HOH HOH A . P 5 HOH 298 600 600 HOH HOH A . P 5 HOH 299 601 601 HOH HOH A . P 5 HOH 300 602 602 HOH HOH A . P 5 HOH 301 603 603 HOH HOH A . P 5 HOH 302 604 604 HOH HOH A . P 5 HOH 303 605 605 HOH HOH A . P 5 HOH 304 606 606 HOH HOH A . P 5 HOH 305 607 607 HOH HOH A . P 5 HOH 306 608 608 HOH HOH A . P 5 HOH 307 609 609 HOH HOH A . P 5 HOH 308 610 610 HOH HOH A . P 5 HOH 309 611 611 HOH HOH A . P 5 HOH 310 612 612 HOH HOH A . P 5 HOH 311 613 613 HOH HOH A . P 5 HOH 312 614 614 HOH HOH A . P 5 HOH 313 615 615 HOH HOH A . P 5 HOH 314 616 616 HOH HOH A . P 5 HOH 315 617 617 HOH HOH A . P 5 HOH 316 618 618 HOH HOH A . P 5 HOH 317 619 619 HOH HOH A . P 5 HOH 318 620 620 HOH HOH A . P 5 HOH 319 621 621 HOH HOH A . P 5 HOH 320 622 622 HOH HOH A . P 5 HOH 321 623 623 HOH HOH A . P 5 HOH 322 624 624 HOH HOH A . P 5 HOH 323 625 625 HOH HOH A . P 5 HOH 324 626 626 HOH HOH A . P 5 HOH 325 627 627 HOH HOH A . P 5 HOH 326 628 628 HOH HOH A . P 5 HOH 327 629 629 HOH HOH A . P 5 HOH 328 630 630 HOH HOH A . P 5 HOH 329 631 631 HOH HOH A . P 5 HOH 330 632 632 HOH HOH A . P 5 HOH 331 633 633 HOH HOH A . P 5 HOH 332 634 634 HOH HOH A . P 5 HOH 333 635 635 HOH HOH A . P 5 HOH 334 636 636 HOH HOH A . P 5 HOH 335 637 637 HOH HOH A . P 5 HOH 336 638 638 HOH HOH A . P 5 HOH 337 639 639 HOH HOH A . P 5 HOH 338 640 640 HOH HOH A . P 5 HOH 339 641 641 HOH HOH A . P 5 HOH 340 642 642 HOH HOH A . P 5 HOH 341 643 643 HOH HOH A . P 5 HOH 342 644 644 HOH HOH A . P 5 HOH 343 645 645 HOH HOH A . P 5 HOH 344 646 646 HOH HOH A . P 5 HOH 345 647 647 HOH HOH A . P 5 HOH 346 648 648 HOH HOH A . P 5 HOH 347 649 649 HOH HOH A . P 5 HOH 348 650 650 HOH HOH A . P 5 HOH 349 651 651 HOH HOH A . P 5 HOH 350 652 652 HOH HOH A . P 5 HOH 351 653 653 HOH HOH A . P 5 HOH 352 654 654 HOH HOH A . P 5 HOH 353 655 655 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 BOS 'data collection' . ? 2 d*TREK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 2G9C _cell.length_a 131.990 _cell.length_b 35.100 _cell.length_c 41.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.43 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2G9C _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2G9C _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 45.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-11-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9160 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9160 # _reflns.entry_id 2G9C _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.58 _reflns.number_obs 26388 _reflns.number_all 26583 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 15.9 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2G9C _refine.ls_number_reflns_obs 21203 _refine.ls_number_reflns_all 21383 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 457952.91 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.97 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.231 _refine.ls_R_factor_all 0.233 _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.242 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.2 _refine.ls_number_reflns_R_free 1530 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 27.8 _refine.aniso_B[1][1] 3.66 _refine.aniso_B[2][2] -3.36 _refine.aniso_B[3][3] -0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -1.69 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.351368 _refine.solvent_model_param_bsol 45.6037 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2G9C _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1422 _refine_hist.pdbx_number_atoms_ligand 97 _refine_hist.number_atoms_solvent 353 _refine_hist.number_atoms_total 1872 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 19.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.88 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 3191 _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.percent_reflns_obs 98.2 _refine_ls_shell.R_factor_R_free 0.327 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 7.9 _refine_ls_shell.number_reflns_R_free 273 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 2 dna-rna_rep_revise.param dna-rna_rep_revise.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 cohex_rep.param cohex_rep.top 'X-RAY DIFFRACTION' 5 acetate.param acetate.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2G9C _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2G9C _struct.title 'Modified pyrimidines Specifically bind the purine riboswitch' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2G9C _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'mRNA, riboswitch, triaminopyrimidine, RNA-ligand complex, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2G9C _struct_ref.pdbx_db_accession 2G9C _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2G9C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2G9C _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A G 32 N1 ? ? A U 22 A G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? A C 26 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog26 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog43 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog44 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog45 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog46 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog53 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog54 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog58 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog59 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog60 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog77 hydrog ? ? A G 48 N2 ? ? ? 1_555 A U 49 O4 ? ? A G 62 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 96 ? 6 'BINDING SITE FOR RESIDUE ACT A 96' AC2 Software A NCO 101 ? 8 'BINDING SITE FOR RESIDUE NCO A 101' AC3 Software A NCO 102 ? 13 'BINDING SITE FOR RESIDUE NCO A 102' AC4 Software A NCO 103 ? 11 'BINDING SITE FOR RESIDUE NCO A 103' AC5 Software A NCO 104 ? 11 'BINDING SITE FOR RESIDUE NCO A 104' AC6 Software A NCO 105 ? 10 'BINDING SITE FOR RESIDUE NCO A 105' AC7 Software A NCO 106 ? 9 'BINDING SITE FOR RESIDUE NCO A 106' AC8 Software A NCO 107 ? 7 'BINDING SITE FOR RESIDUE NCO A 107' AC9 Software A NCO 108 ? 5 'BINDING SITE FOR RESIDUE NCO A 108' BC1 Software A NCO 109 ? 7 'BINDING SITE FOR RESIDUE NCO A 109' BC2 Software A NCO 110 ? 4 'BINDING SITE FOR RESIDUE NCO A 110' BC3 Software A NCO 111 ? 4 'BINDING SITE FOR RESIDUE NCO A 111' BC4 Software A NCO 112 ? 6 'BINDING SITE FOR RESIDUE NCO A 112' BC5 Software A 3AY 91 ? 9 'BINDING SITE FOR RESIDUE 3AY A 91' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G A 18 ? G A 32 . ? 1_555 ? 2 AC1 6 A A 19 ? A A 33 . ? 1_555 ? 3 AC1 6 G A 24 ? G A 38 . ? 1_555 ? 4 AC1 6 C A 25 ? C A 39 . ? 1_555 ? 5 AC1 6 U A 53 ? U A 67 . ? 1_555 ? 6 AC1 6 HOH P . ? HOH A 305 . ? 1_555 ? 7 AC2 8 G A 15 ? G A 29 . ? 4_545 ? 8 AC2 8 U A 16 ? U A 30 . ? 4_545 ? 9 AC2 8 A A 52 ? A A 66 . ? 1_555 ? 10 AC2 8 U A 53 ? U A 67 . ? 1_555 ? 11 AC2 8 HOH P . ? HOH A 326 . ? 1_555 ? 12 AC2 8 HOH P . ? HOH A 368 . ? 1_555 ? 13 AC2 8 HOH P . ? HOH A 516 . ? 1_555 ? 14 AC2 8 HOH P . ? HOH A 592 . ? 1_555 ? 15 AC3 13 G A 24 ? G A 38 . ? 1_555 ? 16 AC3 13 C A 25 ? C A 39 . ? 1_555 ? 17 AC3 13 G A 42 ? G A 56 . ? 1_555 ? 18 AC3 13 G A 43 ? G A 57 . ? 4_556 ? 19 AC3 13 C A 44 ? C A 58 . ? 4_556 ? 20 AC3 13 HOH P . ? HOH A 325 . ? 1_555 ? 21 AC3 13 HOH P . ? HOH A 342 . ? 1_555 ? 22 AC3 13 HOH P . ? HOH A 361 . ? 1_555 ? 23 AC3 13 HOH P . ? HOH A 371 . ? 1_555 ? 24 AC3 13 HOH P . ? HOH A 391 . ? 1_555 ? 25 AC3 13 HOH P . ? HOH A 407 . ? 4_546 ? 26 AC3 13 HOH P . ? HOH A 438 . ? 4_546 ? 27 AC3 13 HOH P . ? HOH A 616 . ? 1_555 ? 28 AC4 11 C A 25 ? C A 39 . ? 1_555 ? 29 AC4 11 G A 41 ? G A 55 . ? 1_555 ? 30 AC4 11 G A 42 ? G A 56 . ? 1_555 ? 31 AC4 11 G A 43 ? G A 57 . ? 1_555 ? 32 AC4 11 G A 54 ? G A 68 . ? 1_555 ? 33 AC4 11 U A 55 ? U A 69 . ? 1_555 ? 34 AC4 11 HOH P . ? HOH A 320 . ? 1_555 ? 35 AC4 11 HOH P . ? HOH A 374 . ? 1_555 ? 36 AC4 11 HOH P . ? HOH A 388 . ? 1_555 ? 37 AC4 11 HOH P . ? HOH A 412 . ? 1_555 ? 38 AC4 11 HOH P . ? HOH A 442 . ? 1_555 ? 39 AC5 11 U A 16 ? U A 30 . ? 1_555 ? 40 AC5 11 G A 17 ? G A 31 . ? 1_555 ? 41 AC5 11 G A 18 ? G A 32 . ? 1_555 ? 42 AC5 11 A A 51 ? A A 65 . ? 1_555 ? 43 AC5 11 A A 52 ? A A 66 . ? 1_555 ? 44 AC5 11 HOH P . ? HOH A 304 . ? 1_555 ? 45 AC5 11 HOH P . ? HOH A 305 . ? 1_555 ? 46 AC5 11 HOH P . ? HOH A 319 . ? 1_555 ? 47 AC5 11 HOH P . ? HOH A 340 . ? 1_555 ? 48 AC5 11 HOH P . ? HOH A 346 . ? 1_555 ? 49 AC5 11 HOH P . ? HOH A 532 . ? 4_555 ? 50 AC6 10 G A 23 ? G A 37 . ? 1_555 ? 51 AC6 10 G A 24 ? G A 38 . ? 1_555 ? 52 AC6 10 HOH P . ? HOH A 327 . ? 1_555 ? 53 AC6 10 HOH P . ? HOH A 357 . ? 1_555 ? 54 AC6 10 HOH P . ? HOH A 415 . ? 1_555 ? 55 AC6 10 HOH P . ? HOH A 424 . ? 1_555 ? 56 AC6 10 HOH P . ? HOH A 468 . ? 1_555 ? 57 AC6 10 HOH P . ? HOH A 499 . ? 1_555 ? 58 AC6 10 HOH P . ? HOH A 590 . ? 1_555 ? 59 AC6 10 HOH P . ? HOH A 609 . ? 1_555 ? 60 AC7 9 C A 12 ? C A 26 . ? 1_555 ? 61 AC7 9 G A 13 ? G A 27 . ? 1_555 ? 62 AC7 9 G A 15 ? G A 29 . ? 4_545 ? 63 AC7 9 U A 16 ? U A 30 . ? 4_545 ? 64 AC7 9 G A 54 ? G A 68 . ? 1_555 ? 65 AC7 9 HOH P . ? HOH A 362 . ? 1_555 ? 66 AC7 9 HOH P . ? HOH A 460 . ? 1_555 ? 67 AC7 9 HOH P . ? HOH A 507 . ? 1_555 ? 68 AC7 9 HOH P . ? HOH A 532 . ? 1_555 ? 69 AC8 7 C A 27 ? C A 41 . ? 1_555 ? 70 AC8 7 G A 28 ? G A 42 . ? 1_555 ? 71 AC8 7 C A 39 ? C A 53 . ? 1_555 ? 72 AC8 7 C A 40 ? C A 54 . ? 1_555 ? 73 AC8 7 HOH P . ? HOH A 312 . ? 1_555 ? 74 AC8 7 HOH P . ? HOH A 390 . ? 1_555 ? 75 AC8 7 HOH P . ? HOH A 546 . ? 1_555 ? 76 AC9 5 G A 32 ? G A 46 . ? 1_555 ? 77 AC9 5 U A 33 ? U A 47 . ? 1_555 ? 78 AC9 5 C A 36 ? C A 50 . ? 1_555 ? 79 AC9 5 U A 37 ? U A 51 . ? 1_555 ? 80 AC9 5 HOH P . ? HOH A 648 . ? 1_555 ? 81 BC1 7 A A 10 ? A A 24 . ? 1_555 ? 82 BC1 7 C A 57 ? C A 71 . ? 1_555 ? 83 BC1 7 HOH P . ? HOH A 360 . ? 1_555 ? 84 BC1 7 HOH P . ? HOH A 383 . ? 1_555 ? 85 BC1 7 HOH P . ? HOH A 538 . ? 1_545 ? 86 BC1 7 HOH P . ? HOH A 585 . ? 1_555 ? 87 BC1 7 HOH P . ? HOH A 627 . ? 1_545 ? 88 BC2 4 A A 7 ? A A 21 . ? 1_555 ? 89 BC2 4 U A 8 ? U A 22 . ? 1_555 ? 90 BC2 4 HOH P . ? HOH A 548 . ? 1_555 ? 91 BC2 4 HOH P . ? HOH A 567 . ? 2_555 ? 92 BC3 4 G A 18 ? G A 32 . ? 1_555 ? 93 BC3 4 A A 19 ? A A 33 . ? 1_555 ? 94 BC3 4 HOH P . ? HOH A 367 . ? 1_555 ? 95 BC3 4 HOH P . ? HOH A 575 . ? 1_555 ? 96 BC4 6 U A 22 ? U A 36 . ? 4_546 ? 97 BC4 6 G A 28 ? G A 42 . ? 1_545 ? 98 BC4 6 C A 29 ? C A 43 . ? 1_545 ? 99 BC4 6 G A 58 ? G A 72 . ? 1_555 ? 100 BC4 6 A A 59 ? A A 73 . ? 1_555 ? 101 BC4 6 HOH P . ? HOH A 492 . ? 1_545 ? 102 BC5 9 A A 7 ? A A 21 . ? 1_555 ? 103 BC5 9 U A 8 ? U A 22 . ? 1_555 ? 104 BC5 9 U A 33 ? U A 47 . ? 1_555 ? 105 BC5 9 U A 37 ? U A 51 . ? 1_555 ? 106 BC5 9 A A 38 ? A A 52 . ? 1_555 ? 107 BC5 9 A A 59 ? A A 73 . ? 1_555 ? 108 BC5 9 U A 60 ? U A 74 . ? 1_555 ? 109 BC5 9 U A 61 ? U A 75 . ? 1_555 ? 110 BC5 9 HOH P . ? HOH A 364 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 300 ? ? O A HOH 604 ? ? 2.11 2 1 O A HOH 336 ? ? O A HOH 421 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 382 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 507 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" A C 39 ? ? "C5'" A C 39 ? ? 1.342 1.420 -0.078 0.009 N 2 1 "C5'" A C 39 ? ? "C4'" A C 39 ? ? 1.588 1.509 0.079 0.012 N 3 1 C6 A A 40 ? ? N6 A A 40 ? ? 1.383 1.335 0.048 0.008 N 4 1 N7 A G 42 ? ? C8 A G 42 ? ? 1.345 1.305 0.040 0.006 N 5 1 "O5'" A C 54 ? ? "C5'" A C 54 ? ? 1.361 1.420 -0.059 0.009 N 6 1 C2 A G 55 ? ? N3 A G 55 ? ? 1.374 1.323 0.051 0.008 N 7 1 C4 A C 58 ? ? N4 A C 58 ? ? 1.396 1.335 0.061 0.009 N 8 1 C4 A U 69 ? ? O4 A U 69 ? ? 1.313 1.232 0.081 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A C 39 ? ? P A C 39 ? ? OP2 A C 39 ? ? 94.70 105.70 -11.00 0.90 N 2 1 "C5'" A C 39 ? ? "C4'" A C 39 ? ? "C3'" A C 39 ? ? 140.83 116.00 24.83 1.60 N 3 1 "O5'" A C 41 ? ? P A C 41 ? ? OP2 A C 41 ? ? 99.81 105.70 -5.89 0.90 N 4 1 "C5'" A C 54 ? ? "C4'" A C 54 ? ? "C3'" A C 54 ? ? 125.78 116.00 9.78 1.60 N 5 1 "O5'" A G 56 ? ? P A G 56 ? ? OP2 A G 56 ? ? 99.03 105.70 -6.67 0.90 N 6 1 "O3'" A A 59 ? ? P A C 60 ? ? OP2 A C 60 ? ? 118.79 110.50 8.29 1.10 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 34 ? ? 0.063 'SIDE CHAIN' 2 1 G A 38 ? ? 0.088 'SIDE CHAIN' 3 1 U A 69 ? ? 0.070 'SIDE CHAIN' 4 1 C A 70 ? ? 0.070 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3AY NAA N N N 1 3AY C6 C Y N 2 3AY C5 C Y N 3 3AY N1 N Y N 4 3AY C2 C Y N 5 3AY NAH N N N 6 3AY N3 N Y N 7 3AY C4 C Y N 8 3AY NAI N N N 9 3AY HAA1 H N N 10 3AY HAA2 H N N 11 3AY H5 H N N 12 3AY HAH1 H N N 13 3AY HAH2 H N N 14 3AY HAI1 H N N 15 3AY HAI2 H N N 16 A OP3 O N N 17 A P P N N 18 A OP1 O N N 19 A OP2 O N N 20 A "O5'" O N N 21 A "C5'" C N N 22 A "C4'" C N R 23 A "O4'" O N N 24 A "C3'" C N S 25 A "O3'" O N N 26 A "C2'" C N R 27 A "O2'" O N N 28 A "C1'" C N R 29 A N9 N Y N 30 A C8 C Y N 31 A N7 N Y N 32 A C5 C Y N 33 A C6 C Y N 34 A N6 N N N 35 A N1 N Y N 36 A C2 C Y N 37 A N3 N Y N 38 A C4 C Y N 39 A HOP3 H N N 40 A HOP2 H N N 41 A "H5'" H N N 42 A "H5''" H N N 43 A "H4'" H N N 44 A "H3'" H N N 45 A "HO3'" H N N 46 A "H2'" H N N 47 A "HO2'" H N N 48 A "H1'" H N N 49 A H8 H N N 50 A H61 H N N 51 A H62 H N N 52 A H2 H N N 53 ACT C C N N 54 ACT O O N N 55 ACT OXT O N N 56 ACT CH3 C N N 57 ACT H1 H N N 58 ACT H2 H N N 59 ACT H3 H N N 60 C OP3 O N N 61 C P P N N 62 C OP1 O N N 63 C OP2 O N N 64 C "O5'" O N N 65 C "C5'" C N N 66 C "C4'" C N R 67 C "O4'" O N N 68 C "C3'" C N S 69 C "O3'" O N N 70 C "C2'" C N R 71 C "O2'" O N N 72 C "C1'" C N R 73 C N1 N N N 74 C C2 C N N 75 C O2 O N N 76 C N3 N N N 77 C C4 C N N 78 C N4 N N N 79 C C5 C N N 80 C C6 C N N 81 C HOP3 H N N 82 C HOP2 H N N 83 C "H5'" H N N 84 C "H5''" H N N 85 C "H4'" H N N 86 C "H3'" H N N 87 C "HO3'" H N N 88 C "H2'" H N N 89 C "HO2'" H N N 90 C "H1'" H N N 91 C H41 H N N 92 C H42 H N N 93 C H5 H N N 94 C H6 H N N 95 G OP3 O N N 96 G P P N N 97 G OP1 O N N 98 G OP2 O N N 99 G "O5'" O N N 100 G "C5'" C N N 101 G "C4'" C N R 102 G "O4'" O N N 103 G "C3'" C N S 104 G "O3'" O N N 105 G "C2'" C N R 106 G "O2'" O N N 107 G "C1'" C N R 108 G N9 N Y N 109 G C8 C Y N 110 G N7 N Y N 111 G C5 C Y N 112 G C6 C N N 113 G O6 O N N 114 G N1 N N N 115 G C2 C N N 116 G N2 N N N 117 G N3 N N N 118 G C4 C Y N 119 G HOP3 H N N 120 G HOP2 H N N 121 G "H5'" H N N 122 G "H5''" H N N 123 G "H4'" H N N 124 G "H3'" H N N 125 G "HO3'" H N N 126 G "H2'" H N N 127 G "HO2'" H N N 128 G "H1'" H N N 129 G H8 H N N 130 G H1 H N N 131 G H21 H N N 132 G H22 H N N 133 HOH O O N N 134 HOH H1 H N N 135 HOH H2 H N N 136 NCO CO CO N N 137 NCO N1 N N N 138 NCO N2 N N N 139 NCO N3 N N N 140 NCO N4 N N N 141 NCO N5 N N N 142 NCO N6 N N N 143 NCO HN11 H N N 144 NCO HN12 H N N 145 NCO HN13 H N N 146 NCO HN21 H N N 147 NCO HN22 H N N 148 NCO HN23 H N N 149 NCO HN31 H N N 150 NCO HN32 H N N 151 NCO HN33 H N N 152 NCO HN41 H N N 153 NCO HN42 H N N 154 NCO HN43 H N N 155 NCO HN51 H N N 156 NCO HN52 H N N 157 NCO HN53 H N N 158 NCO HN61 H N N 159 NCO HN62 H N N 160 NCO HN63 H N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3AY NAA C6 sing N N 1 3AY NAA HAA1 sing N N 2 3AY NAA HAA2 sing N N 3 3AY C6 C5 doub Y N 4 3AY C6 N1 sing Y N 5 3AY C5 C4 sing Y N 6 3AY C5 H5 sing N N 7 3AY N1 C2 doub Y N 8 3AY C2 NAH sing N N 9 3AY C2 N3 sing Y N 10 3AY NAH HAH1 sing N N 11 3AY NAH HAH2 sing N N 12 3AY N3 C4 doub Y N 13 3AY C4 NAI sing N N 14 3AY NAI HAI1 sing N N 15 3AY NAI HAI2 sing N N 16 A OP3 P sing N N 17 A OP3 HOP3 sing N N 18 A P OP1 doub N N 19 A P OP2 sing N N 20 A P "O5'" sing N N 21 A OP2 HOP2 sing N N 22 A "O5'" "C5'" sing N N 23 A "C5'" "C4'" sing N N 24 A "C5'" "H5'" sing N N 25 A "C5'" "H5''" sing N N 26 A "C4'" "O4'" sing N N 27 A "C4'" "C3'" sing N N 28 A "C4'" "H4'" sing N N 29 A "O4'" "C1'" sing N N 30 A "C3'" "O3'" sing N N 31 A "C3'" "C2'" sing N N 32 A "C3'" "H3'" sing N N 33 A "O3'" "HO3'" sing N N 34 A "C2'" "O2'" sing N N 35 A "C2'" "C1'" sing N N 36 A "C2'" "H2'" sing N N 37 A "O2'" "HO2'" sing N N 38 A "C1'" N9 sing N N 39 A "C1'" "H1'" sing N N 40 A N9 C8 sing Y N 41 A N9 C4 sing Y N 42 A C8 N7 doub Y N 43 A C8 H8 sing N N 44 A N7 C5 sing Y N 45 A C5 C6 sing Y N 46 A C5 C4 doub Y N 47 A C6 N6 sing N N 48 A C6 N1 doub Y N 49 A N6 H61 sing N N 50 A N6 H62 sing N N 51 A N1 C2 sing Y N 52 A C2 N3 doub Y N 53 A C2 H2 sing N N 54 A N3 C4 sing Y N 55 ACT C O doub N N 56 ACT C OXT sing N N 57 ACT C CH3 sing N N 58 ACT CH3 H1 sing N N 59 ACT CH3 H2 sing N N 60 ACT CH3 H3 sing N N 61 C OP3 P sing N N 62 C OP3 HOP3 sing N N 63 C P OP1 doub N N 64 C P OP2 sing N N 65 C P "O5'" sing N N 66 C OP2 HOP2 sing N N 67 C "O5'" "C5'" sing N N 68 C "C5'" "C4'" sing N N 69 C "C5'" "H5'" sing N N 70 C "C5'" "H5''" sing N N 71 C "C4'" "O4'" sing N N 72 C "C4'" "C3'" sing N N 73 C "C4'" "H4'" sing N N 74 C "O4'" "C1'" sing N N 75 C "C3'" "O3'" sing N N 76 C "C3'" "C2'" sing N N 77 C "C3'" "H3'" sing N N 78 C "O3'" "HO3'" sing N N 79 C "C2'" "O2'" sing N N 80 C "C2'" "C1'" sing N N 81 C "C2'" "H2'" sing N N 82 C "O2'" "HO2'" sing N N 83 C "C1'" N1 sing N N 84 C "C1'" "H1'" sing N N 85 C N1 C2 sing N N 86 C N1 C6 sing N N 87 C C2 O2 doub N N 88 C C2 N3 sing N N 89 C N3 C4 doub N N 90 C C4 N4 sing N N 91 C C4 C5 sing N N 92 C N4 H41 sing N N 93 C N4 H42 sing N N 94 C C5 C6 doub N N 95 C C5 H5 sing N N 96 C C6 H6 sing N N 97 G OP3 P sing N N 98 G OP3 HOP3 sing N N 99 G P OP1 doub N N 100 G P OP2 sing N N 101 G P "O5'" sing N N 102 G OP2 HOP2 sing N N 103 G "O5'" "C5'" sing N N 104 G "C5'" "C4'" sing N N 105 G "C5'" "H5'" sing N N 106 G "C5'" "H5''" sing N N 107 G "C4'" "O4'" sing N N 108 G "C4'" "C3'" sing N N 109 G "C4'" "H4'" sing N N 110 G "O4'" "C1'" sing N N 111 G "C3'" "O3'" sing N N 112 G "C3'" "C2'" sing N N 113 G "C3'" "H3'" sing N N 114 G "O3'" "HO3'" sing N N 115 G "C2'" "O2'" sing N N 116 G "C2'" "C1'" sing N N 117 G "C2'" "H2'" sing N N 118 G "O2'" "HO2'" sing N N 119 G "C1'" N9 sing N N 120 G "C1'" "H1'" sing N N 121 G N9 C8 sing Y N 122 G N9 C4 sing Y N 123 G C8 N7 doub Y N 124 G C8 H8 sing N N 125 G N7 C5 sing Y N 126 G C5 C6 sing N N 127 G C5 C4 doub Y N 128 G C6 O6 doub N N 129 G C6 N1 sing N N 130 G N1 C2 sing N N 131 G N1 H1 sing N N 132 G C2 N2 sing N N 133 G C2 N3 doub N N 134 G N2 H21 sing N N 135 G N2 H22 sing N N 136 G N3 C4 sing N N 137 HOH O H1 sing N N 138 HOH O H2 sing N N 139 NCO CO N1 sing N N 140 NCO CO N2 sing N N 141 NCO CO N3 sing N N 142 NCO CO N4 sing N N 143 NCO CO N5 sing N N 144 NCO CO N6 sing N N 145 NCO N1 HN11 sing N N 146 NCO N1 HN12 sing N N 147 NCO N1 HN13 sing N N 148 NCO N2 HN21 sing N N 149 NCO N2 HN22 sing N N 150 NCO N2 HN23 sing N N 151 NCO N3 HN31 sing N N 152 NCO N3 HN32 sing N N 153 NCO N3 HN33 sing N N 154 NCO N4 HN41 sing N N 155 NCO N4 HN42 sing N N 156 NCO N4 HN43 sing N N 157 NCO N5 HN51 sing N N 158 NCO N5 HN52 sing N N 159 NCO N5 HN53 sing N N 160 NCO N6 HN61 sing N N 161 NCO N6 HN62 sing N N 162 NCO N6 HN63 sing N N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2G9C 'double helix' 2G9C 'a-form double helix' 2G9C 'mismatched base pair' 2G9C 'internal loop' 2G9C 'triple helix' 2G9C 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 67 1_555 -0.848 -0.433 0.502 3.857 -10.061 -3.543 1 A_G15:C81_A A 15 ? A 81 ? 19 1 1 A G 2 1_555 A C 66 1_555 -0.006 -0.568 -0.080 -5.578 -14.745 -4.118 2 A_G16:C80_A A 16 ? A 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 -0.051 -0.089 -0.090 -0.382 -18.925 6.605 3 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 0.106 -0.295 -0.196 1.596 -17.033 -2.050 4 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.155 -0.056 -0.018 -7.156 -11.436 4.087 5 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.092 -0.175 0.230 -10.028 -19.861 4.592 6 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.092 -0.029 -0.006 -8.581 -13.356 1.680 7 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 37 1_555 A U 33 1_555 -3.622 -0.420 0.600 -28.102 37.995 -73.393 8 A_U51:U47_A A 51 ? A 47 ? ? ? 1 A A 38 1_555 A U 8 1_555 -0.096 -0.128 -0.157 -12.415 4.123 -0.631 9 A_A52:U22_A A 52 ? A 22 ? 20 1 1 A C 39 1_555 A G 32 1_555 0.182 0.055 -0.246 18.726 -1.638 0.195 10 A_C53:G46_A A 53 ? A 46 ? 19 1 1 A U 11 1_555 A A 31 1_555 -0.028 -0.083 0.243 0.213 -12.995 2.497 11 A_U25:A45_A A 25 ? A 45 ? 20 1 1 A C 12 1_555 A A 30 1_555 -1.828 0.288 -0.133 1.980 -18.440 10.760 12 A_C26:A44_A A 26 ? A 44 ? ? 1 1 A G 13 1_555 A C 29 1_555 -0.289 -0.101 0.009 -8.150 -9.544 1.123 13 A_G27:C43_A A 27 ? A 43 ? 19 1 1 A C 14 1_555 A G 28 1_555 0.022 -0.057 -0.105 3.948 -7.858 0.741 14 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A G 15 1_555 A C 27 1_555 -0.325 -0.139 -0.009 1.605 -14.845 -0.711 15 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A U 16 1_555 A A 26 1_555 -0.045 -0.039 0.072 3.612 -5.504 5.328 16 A_U30:A40_A A 30 ? A 40 ? 20 1 1 A G 17 1_555 A C 25 1_555 -0.175 -0.158 0.028 6.192 -7.398 0.627 17 A_G31:C39_A A 31 ? A 39 ? 19 1 1 A A 19 1_555 A A 52 1_555 4.154 1.500 -0.188 -8.767 -5.112 -111.856 18 A_A33:A66_A A 33 ? A 66 ? 5 4 1 A U 20 1_555 A A 51 1_555 4.263 -2.006 -0.485 -4.692 -4.054 -100.066 19 A_U34:A65_A A 34 ? A 65 ? 24 4 1 A A 21 1_555 A A 50 1_555 -4.128 1.454 0.510 -4.342 5.817 -111.163 20 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A G 23 1_555 A C 47 1_555 -0.190 -0.182 0.409 1.519 -9.842 -3.799 21 A_G37:C61_A A 37 ? A 61 ? 19 1 1 A G 24 1_555 A C 46 1_555 -0.039 -0.061 0.329 15.383 -14.989 0.012 22 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A U 53 1_555 A A 45 1_555 -0.151 -0.049 0.015 3.000 -9.676 0.141 23 A_U67:A59_A A 67 ? A 59 ? 20 1 1 A G 54 1_555 A C 44 1_555 -0.059 -0.174 0.047 -4.471 -14.541 1.500 24 A_G68:C58_A A 68 ? A 58 ? 19 1 1 A U 55 1_555 A G 43 1_555 2.271 -0.623 0.079 -0.911 -17.451 -3.761 25 A_U69:G57_A A 69 ? A 57 ? 28 ? 1 A C 56 1_555 A G 42 1_555 0.425 -0.125 0.002 2.901 -14.442 -1.622 26 A_C70:G56_A A 70 ? A 56 ? 19 1 1 A C 57 1_555 A G 41 1_555 0.160 -0.116 0.016 7.486 -10.341 -0.725 27 A_C71:G55_A A 71 ? A 55 ? 19 1 1 A G 58 1_555 A C 40 1_555 -0.146 -0.156 0.095 3.210 -13.095 2.004 28 A_G72:C54_A A 72 ? A 54 ? 19 1 1 A G 48 1_555 A U 49 1_555 7.768 1.878 0.581 -1.936 9.428 14.418 29 A_G62:U63_A A 62 ? A 63 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 67 1_555 A G 2 1_555 A C 66 1_555 0.066 -1.711 3.505 0.531 5.418 44.133 -2.784 -0.036 3.283 7.178 -0.703 44.451 1 AA_G15G16:C80C81_AA A 15 ? A 81 ? A 16 ? A 80 ? 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 -0.039 -1.553 2.994 0.197 7.772 35.225 -3.464 0.088 2.604 12.653 -0.321 36.046 2 AA_G16A17:U79C80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.230 -1.620 3.173 2.000 8.787 30.525 -4.413 -0.088 2.626 16.249 -3.698 31.797 3 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 0.105 -1.777 3.435 -0.871 13.910 29.469 -5.444 -0.330 2.373 25.618 1.604 32.533 4 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 0.072 -1.298 3.313 -1.164 13.248 31.001 -4.264 -0.303 2.556 23.478 2.063 33.669 5 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.488 -1.408 3.069 3.742 18.956 29.185 -4.733 -0.344 1.883 33.402 -6.593 34.885 6 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 7 1_555 A U 61 1_555 A U 37 1_555 A U 33 1_555 -1.929 6.286 1.761 12.834 5.704 158.666 3.189 1.000 1.779 2.902 -6.529 158.828 7 AA_A21U51:U47U75_AA A 21 ? A 75 ? A 51 ? A 47 ? 1 A U 37 1_555 A U 33 1_555 A A 38 1_555 A U 8 1_555 0.032 -1.036 3.287 -2.104 23.146 2.446 -8.318 -0.603 -0.682 83.730 7.612 23.368 8 AA_U51A52:U22U47_AA A 51 ? A 47 ? A 52 ? A 22 ? 1 A A 38 1_555 A U 8 1_555 A C 39 1_555 A G 32 1_555 2.055 0.029 2.543 1.897 9.966 45.281 -0.633 -2.484 2.573 12.755 -2.428 46.345 9 AA_A52C53:G46U22_AA A 52 ? A 22 ? A 53 ? A 46 ? 1 A C 39 1_555 A G 32 1_555 A U 11 1_555 A A 31 1_555 -2.133 -0.399 3.598 -14.880 2.216 53.230 -0.586 1.261 4.000 2.419 16.243 55.165 10 AA_C53U25:A45G46_AA A 53 ? A 46 ? A 25 ? A 45 ? 1 A U 11 1_555 A A 31 1_555 A C 12 1_555 A A 30 1_555 -0.351 -2.495 2.914 -0.110 7.287 25.363 -6.999 0.746 2.127 16.176 0.245 26.373 11 AA_U25C26:A44A45_AA A 25 ? A 45 ? A 26 ? A 44 ? 1 A C 12 1_555 A A 30 1_555 A G 13 1_555 A C 29 1_555 -0.161 -1.608 3.500 -2.468 10.158 34.778 -4.015 -0.089 2.935 16.538 4.018 36.269 12 AA_C26G27:C43A44_AA A 26 ? A 44 ? A 27 ? A 43 ? 1 A G 13 1_555 A C 29 1_555 A C 14 1_555 A G 28 1_555 0.801 -2.305 2.989 3.325 5.161 26.539 -6.011 -0.984 2.582 11.055 -7.123 27.227 13 AA_G27C28:G42C43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -0.727 -1.829 3.209 -1.669 9.193 28.056 -5.348 1.105 2.534 18.331 3.327 29.541 14 AA_C28G29:C41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 15 1_555 A C 27 1_555 A U 16 1_555 A A 26 1_555 0.015 -1.237 3.207 -2.257 9.559 32.208 -3.587 -0.368 2.731 16.750 3.954 33.635 15 AA_G29U30:A40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A U 16 1_555 A A 26 1_555 A G 17 1_555 A C 25 1_555 0.710 -1.761 3.207 -0.096 2.438 31.677 -3.646 -1.314 3.064 4.458 0.176 31.768 16 AA_U30G31:C39A40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A A 19 1_555 A A 52 1_555 A U 20 1_555 A A 51 1_555 0.121 -1.859 3.334 9.225 3.402 39.229 -3.075 0.864 3.118 4.972 -13.484 40.396 17 AA_A33U34:A65A66_AA A 33 ? A 66 ? A 34 ? A 65 ? 1 A U 20 1_555 A A 51 1_555 A A 21 1_555 A A 50 1_555 -3.731 4.104 3.632 -20.676 17.309 -19.348 -7.974 -7.468 -2.292 -35.288 -42.153 -33.083 18 AA_U34A35:A64A65_AA A 34 ? A 65 ? A 35 ? A 64 ? 1 A G 23 1_555 A C 47 1_555 A G 24 1_555 A C 46 1_555 0.632 -0.547 3.056 1.655 7.261 29.147 -2.425 -0.907 2.870 14.139 -3.222 30.064 19 AA_G37G38:C60C61_AA A 37 ? A 61 ? A 38 ? A 60 ? 1 A G 24 1_555 A C 46 1_555 A U 53 1_555 A A 45 1_555 -2.038 -0.480 3.248 -5.387 8.210 54.154 -1.015 1.883 3.322 8.936 5.863 54.971 20 AA_G38U67:A59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A U 53 1_555 A A 45 1_555 A G 54 1_555 A C 44 1_555 -0.291 -1.646 3.428 -0.182 5.846 34.105 -3.676 0.462 3.113 9.878 0.307 34.588 21 AA_U67G68:C58A59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A G 54 1_555 A C 44 1_555 A U 55 1_555 A G 43 1_555 -0.498 -1.107 3.146 1.176 2.263 43.029 -1.719 0.788 3.072 3.082 -1.602 43.101 22 AA_G68U69:G57C58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A U 55 1_555 A G 43 1_555 A C 56 1_555 A G 42 1_555 -0.029 -1.474 2.994 3.776 8.855 27.283 -4.617 0.768 2.383 18.074 -7.706 28.901 23 AA_U69C70:G56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A C 56 1_555 A G 42 1_555 A C 57 1_555 A G 41 1_555 0.195 -0.567 3.196 0.399 6.691 29.816 -2.352 -0.295 3.003 12.802 -0.763 30.544 24 AA_C70C71:G55G56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A C 57 1_555 A G 41 1_555 A G 58 1_555 A C 40 1_555 0.930 -1.734 3.200 -1.769 9.208 33.613 -4.158 -1.795 2.598 15.551 2.987 34.860 25 AA_C71G72:C54G55_AA A 71 ? A 55 ? A 72 ? A 54 ? # _atom_sites.entry_id 2G9C _atom_sites.fract_transf_matrix[1][1] 0.007576 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000057 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028490 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023924 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_