HEADER HYDROLASE 06-MAR-06 2G9F TITLE CRYSTAL STRUCTURE OF INTEIN-TAGGED MOUSE PNGASE C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE N-GLYCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: PNGASE; COMPND 6 EC: 3.5.1.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NGLY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS BETA-SANDWICH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHOU,G.ZHAO,L.WANG,G.LI,W.J.LENNARZ,H.SCHINDELIN REVDAT 5 14-FEB-24 2G9F 1 REMARK REVDAT 4 13-JUL-11 2G9F 1 VERSN REVDAT 3 24-FEB-09 2G9F 1 VERSN REVDAT 2 08-JUL-08 2G9F 1 JRNL REVDAT 1 24-OCT-06 2G9F 0 JRNL AUTH X.ZHOU,G.ZHAO,J.J.TRUGLIO,L.WANG,G.LI,W.J.LENNARZ, JRNL AUTH 2 H.SCHINDELIN JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF THE C-TERMINAL DOMAIN JRNL TITL 2 OF MOUSE PEPTIDE-N-GLYCANASE IDENTIFY IT AS A JRNL TITL 3 MANNOSE-BINDING MODULE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 17214 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17088551 JRNL DOI 10.1073/PNAS.0602954103 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 14827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1058 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.882 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1514 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1333 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2036 ; 1.413 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3100 ; 1.194 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 179 ; 6.948 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;36.767 ;23.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 273 ;13.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1682 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 333 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 237 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1375 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 732 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 950 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.201 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.137 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1162 ; 1.081 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 373 ; 0.216 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1432 ; 1.286 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 750 ; 2.301 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 604 ; 3.232 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 490 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1981 9.8087 4.3342 REMARK 3 T TENSOR REMARK 3 T11: 0.3766 T22: 0.3141 REMARK 3 T33: -0.3460 T12: 0.1375 REMARK 3 T13: 0.1459 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 26.1117 L22: 10.4793 REMARK 3 L33: 8.2648 L12: 9.2852 REMARK 3 L13: -10.3049 L23: -3.7993 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 1.5556 S13: -0.0488 REMARK 3 S21: -1.7482 S22: -0.1251 S23: 0.2055 REMARK 3 S31: 0.5494 S32: -0.3429 S33: 0.0944 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 491 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9517 16.1358 14.7683 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: -0.0733 REMARK 3 T33: -0.1452 T12: -0.0010 REMARK 3 T13: -0.0192 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 4.5578 L22: 1.9716 REMARK 3 L33: 4.5590 L12: -1.0693 REMARK 3 L13: -1.8154 L23: 0.7418 REMARK 3 S TENSOR REMARK 3 S11: 0.1875 S12: 0.7507 S13: 0.3466 REMARK 3 S21: -0.6318 S22: -0.0499 S23: 0.0504 REMARK 3 S31: -0.3451 S32: -0.1686 S33: -0.1376 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 534 A 553 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3781 7.4753 21.0233 REMARK 3 T TENSOR REMARK 3 T11: -0.1461 T22: -0.2324 REMARK 3 T33: -0.2306 T12: -0.0284 REMARK 3 T13: -0.0683 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.0833 L22: 5.6553 REMARK 3 L33: 3.3569 L12: 0.0943 REMARK 3 L13: -0.4465 L23: -1.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.3788 S13: -0.1491 REMARK 3 S21: -0.5345 S22: 0.0620 S23: 0.3167 REMARK 3 S31: 0.0793 S32: -0.1243 S33: -0.0411 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 554 A 578 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9204 10.2252 19.5277 REMARK 3 T TENSOR REMARK 3 T11: -0.0772 T22: -0.1076 REMARK 3 T33: -0.1660 T12: -0.0217 REMARK 3 T13: 0.0502 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 4.4492 L22: 2.5654 REMARK 3 L33: 4.2138 L12: 0.0293 REMARK 3 L13: -2.0955 L23: -1.8849 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.5652 S13: 0.0832 REMARK 3 S21: -0.4955 S22: -0.0194 S23: -0.3062 REMARK 3 S31: 0.3662 S32: 0.2879 S33: 0.0834 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 579 A 583 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5521 4.3162 23.4944 REMARK 3 T TENSOR REMARK 3 T11: -0.0662 T22: -0.2042 REMARK 3 T33: -0.1341 T12: 0.0159 REMARK 3 T13: 0.0550 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 20.2763 L22: 2.3913 REMARK 3 L33: 26.3651 L12: -6.8999 REMARK 3 L13: -11.1555 L23: 4.7319 REMARK 3 S TENSOR REMARK 3 S11: -0.6560 S12: 0.3856 S13: -0.9164 REMARK 3 S21: -0.0785 S22: 0.1013 S23: 0.2858 REMARK 3 S31: 2.2143 S32: 0.5462 S33: 0.5548 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 584 A 608 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5035 7.9706 20.5119 REMARK 3 T TENSOR REMARK 3 T11: -0.0911 T22: -0.0407 REMARK 3 T33: -0.0772 T12: 0.0603 REMARK 3 T13: 0.0824 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.2503 L22: 7.4572 REMARK 3 L33: 10.0211 L12: -0.6020 REMARK 3 L13: -1.4915 L23: 3.4242 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: 0.5021 S13: -0.2882 REMARK 3 S21: -0.3422 S22: -0.1208 S23: -0.4873 REMARK 3 S31: 0.7268 S32: 0.7970 S33: 0.2023 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 609 A 615 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5931 5.0837 20.2882 REMARK 3 T TENSOR REMARK 3 T11: -0.0579 T22: -0.1789 REMARK 3 T33: -0.2363 T12: -0.0299 REMARK 3 T13: 0.0006 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 32.7127 L22: 1.6648 REMARK 3 L33: 44.0753 L12: 3.5422 REMARK 3 L13: -35.9300 L23: -6.3213 REMARK 3 S TENSOR REMARK 3 S11: -0.3378 S12: 0.2068 S13: -0.6796 REMARK 3 S21: -0.4783 S22: -0.1942 S23: -0.1152 REMARK 3 S31: 0.7085 S32: 0.7255 S33: 0.5320 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 616 A 624 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7735 5.8214 33.9342 REMARK 3 T TENSOR REMARK 3 T11: -0.2008 T22: -0.2284 REMARK 3 T33: -0.1053 T12: 0.0075 REMARK 3 T13: 0.0103 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 10.9379 L22: 13.3533 REMARK 3 L33: 6.5419 L12: -5.0205 REMARK 3 L13: 0.8522 L23: -4.2800 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: -0.5905 S13: -0.2489 REMARK 3 S21: 0.2724 S22: 0.5281 S23: 1.0832 REMARK 3 S31: -0.1753 S32: -0.6819 S33: -0.4199 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 625 A 641 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7009 19.3186 24.7685 REMARK 3 T TENSOR REMARK 3 T11: -0.0758 T22: -0.2278 REMARK 3 T33: -0.1143 T12: -0.0034 REMARK 3 T13: -0.0013 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 6.9800 L22: 10.8895 REMARK 3 L33: 6.8552 L12: -1.8400 REMARK 3 L13: -0.6830 L23: -2.5338 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.6411 S13: 0.8584 REMARK 3 S21: -0.4283 S22: 0.0550 S23: -0.3624 REMARK 3 S31: -0.7924 S32: -0.0195 S33: -0.1657 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 642 A 651 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7445 11.7844 10.5651 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: 0.2148 REMARK 3 T33: -0.1180 T12: 0.0755 REMARK 3 T13: 0.2097 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 29.2643 L22: 8.4422 REMARK 3 L33: 12.8522 L12: -11.9105 REMARK 3 L13: -14.2064 L23: 5.9212 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: 1.6820 S13: -0.5726 REMARK 3 S21: -1.0187 S22: -0.5043 S23: -0.2435 REMARK 3 S31: 0.2752 S32: 0.3433 S33: 0.4105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0055 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : 0.62200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SIRAS REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-16% PEG 8000, 100 MM TRIS-HCL, PH REMARK 280 8.5, 120 MM MGCL2 AND 10 MM DTT, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.10867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.55433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.55433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 129.10867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 1 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 451 REMARK 465 LEU A 452 REMARK 465 GLY A 453 REMARK 465 GLY A 454 REMARK 465 ARG A 455 REMARK 465 VAL A 456 REMARK 465 SER A 457 REMARK 465 GLY A 458 REMARK 465 SER A 459 REMARK 465 LEU A 460 REMARK 465 ALA A 461 REMARK 465 TRP A 462 REMARK 465 ARG A 463 REMARK 465 VAL A 464 REMARK 465 ALA A 465 REMARK 465 ARG A 466 REMARK 465 GLY A 467 REMARK 465 GLU A 468 REMARK 465 THR A 469 REMARK 465 GLY A 470 REMARK 465 LEU A 471 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 40 O HOH A 98 2.07 REMARK 500 O HOH A 74 O HOH A 97 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 650 CG ASP A 650 OD1 0.225 REMARK 500 ASP A 650 CG ASP A 650 OD2 0.228 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 473 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 473 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 650 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 519 -75.08 -73.74 REMARK 500 ASP A 562 -80.55 -101.21 REMARK 500 GLU A 574 -128.43 52.45 REMARK 500 SER A 584 -167.86 -104.52 REMARK 500 ARG A 617 -152.84 66.94 REMARK 500 ASN A 640 33.00 -143.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G9G RELATED DB: PDB DBREF 2G9F A 451 651 GB 30517852 AAP03060 451 651 SEQRES 1 A 201 GLU LEU GLY GLY ARG VAL SER GLY SER LEU ALA TRP ARG SEQRES 2 A 201 VAL ALA ARG GLY GLU THR GLY LEU GLU ARG LYS GLU ILE SEQRES 3 A 201 LEU PHE ILE PRO SER GLU ASN GLU LYS ILE SER LYS GLN SEQRES 4 A 201 PHE HIS LEU ARG TYR ASP ILE VAL ARG ASP ARG TYR ILE SEQRES 5 A 201 ARG VAL SER ASP ASN ASN THR ASN ILE SER GLY TRP GLU SEQRES 6 A 201 ASN GLY VAL TRP LYS MET GLU SER ILE PHE ARG LYS VAL SEQRES 7 A 201 GLU LYS ASP TRP ASN MET VAL TYR LEU ALA ARG LYS GLU SEQRES 8 A 201 GLY SER SER PHE ALA TYR ILE SER TRP LYS PHE GLU CYS SEQRES 9 A 201 GLY SER ALA GLY LEU LYS VAL ASP THR VAL SER ILE ARG SEQRES 10 A 201 THR SER SER GLN SER PHE GLU SER GLY SER VAL ARG TRP SEQRES 11 A 201 LYS LEU ARG SER GLU THR ALA GLN VAL ASN LEU LEU GLY SEQRES 12 A 201 ASP LYS ASN LEU ARG SER TYR ASN ASP PHE SER GLY ALA SEQRES 13 A 201 THR GLU VAL THR LEU GLU ALA GLU LEU SER ARG GLY ASP SEQRES 14 A 201 GLY ASP VAL ALA TRP GLN HIS THR GLN LEU PHE ARG GLN SEQRES 15 A 201 SER LEU ASN ASP SER GLY GLU ASN GLY LEU GLU ILE ILE SEQRES 16 A 201 ILE THR PHE ASN ASP LEU HET CL A 101 1 HET GOL A 115 6 HET GOL A 103 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL CL 1- FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *98(H2 O) HELIX 1 1 SER A 481 LYS A 488 1 8 HELIX 2 2 SER A 505 ASN A 507 5 3 HELIX 3 3 TRP A 514 VAL A 518 5 5 HELIX 4 4 GLY A 555 ALA A 557 5 3 HELIX 5 5 ASP A 619 GLN A 625 5 7 SHEET 1 A 6 THR A 509 SER A 512 0 SHEET 2 A 6 ARG A 500 ARG A 503 -1 N ARG A 503 O THR A 509 SHEET 3 A 6 GLN A 489 ASP A 495 -1 N ASP A 495 O ARG A 500 SHEET 4 A 6 LEU A 642 ASP A 650 -1 O ILE A 644 N LEU A 492 SHEET 5 A 6 LEU A 559 ARG A 567 -1 N SER A 565 O ILE A 645 SHEET 6 A 6 ARG A 598 TYR A 600 -1 O TYR A 600 N VAL A 564 SHEET 1 B 5 MET A 521 GLU A 522 0 SHEET 2 B 5 PHE A 545 GLU A 553 -1 O TYR A 547 N GLU A 522 SHEET 3 B 5 GLU A 608 SER A 616 -1 O LEU A 615 N ALA A 546 SHEET 4 B 5 SER A 577 ARG A 583 -1 N SER A 577 O SER A 616 SHEET 5 B 5 GLN A 588 LEU A 591 -1 O VAL A 589 N LEU A 582 SHEET 1 C 4 ILE A 524 GLU A 529 0 SHEET 2 C 4 MET A 534 ARG A 539 -1 O TYR A 536 N LYS A 527 SHEET 3 C 4 THR A 627 SER A 633 -1 O LEU A 629 N LEU A 537 SHEET 4 C 4 SER A 570 SER A 572 -1 N GLN A 571 O GLN A 628 SITE 1 AC1 3 ARG A 579 SER A 616 ARG A 617 SITE 1 AC2 5 HOH A 6 HOH A 61 PHE A 573 ARG A 598 SITE 2 AC2 5 ARG A 631 SITE 1 AC3 4 HOH A 81 LEU A 477 ILE A 479 ARG A 503 CRYST1 40.760 40.760 193.663 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024534 0.014165 0.000000 0.00000 SCALE2 0.000000 0.028329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005164 0.00000