HEADER DNA BINDING PROTEIN 07-MAR-06 2G9W TITLE CRYSTAL STRUCTURE OF RV1846C, A PUTATIVE TRANSCRIPTIONAL REGULATORY TITLE 2 PROTEIN OF MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV1846C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS DNA-BINDING DOMAIN, BACTERIAL TRANSCRIPTION REPRESSOR, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.A.SAUL,A.HAOUZ,C.FIEZ-VANDAL,W.SHEPARD,P.M.ALZARI REVDAT 5 20-OCT-21 2G9W 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2G9W 1 VERSN REVDAT 3 07-APR-09 2G9W 1 JRNL REVDAT 2 24-FEB-09 2G9W 1 VERSN REVDAT 1 13-MAR-07 2G9W 0 JRNL AUTH C.SALA,A.HAOUZ,F.A.SAUL,I.MIRAS,I.ROSENKRANDS,P.M.ALZARI, JRNL AUTH 2 S.T.COLE JRNL TITL GENOME-WIDE REGULON AND CRYSTAL STRUCTURE OF BLAI (RV1846C) JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF MOL.MICROBIOL. V. 71 1102 2009 JRNL REFN ISSN 0950-382X JRNL PMID 19154333 JRNL DOI 10.1111/J.1365-2958.2008.06583.X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1410 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 40 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1855 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : 3.07000 REMARK 3 B33 (A**2) : -2.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.792 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1900 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1841 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2567 ; 1.415 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4207 ; 0.827 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 5.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;36.853 ;22.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;15.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;13.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2121 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 402 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 406 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1893 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 900 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1199 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.010 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1271 ; 1.435 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 486 ; 0.311 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1885 ; 1.737 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 755 ; 2.082 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 682 ; 2.730 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3264 41.1621 7.8114 REMARK 3 T TENSOR REMARK 3 T11: -0.1209 T22: -0.1696 REMARK 3 T33: -0.0963 T12: -0.0218 REMARK 3 T13: -0.0008 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.5169 L22: 1.2315 REMARK 3 L33: 4.4943 L12: -1.3582 REMARK 3 L13: -0.0759 L23: -1.1189 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: -0.0883 S13: -0.1923 REMARK 3 S21: -0.0058 S22: 0.0303 S23: 0.0652 REMARK 3 S31: -0.0080 S32: -0.0266 S33: -0.0778 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 61.5536 43.3622 19.8468 REMARK 3 T TENSOR REMARK 3 T11: -0.0565 T22: -0.0776 REMARK 3 T33: -0.0960 T12: -0.0746 REMARK 3 T13: -0.0189 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 23.9740 L22: 2.6736 REMARK 3 L33: 1.9605 L12: -0.2107 REMARK 3 L13: 6.6701 L23: 0.4704 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: -0.0369 S13: 0.3013 REMARK 3 S21: 0.5555 S22: -0.1173 S23: 0.0118 REMARK 3 S31: -0.0400 S32: 0.3470 S33: 0.0736 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 69.1092 46.5547 29.7061 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0336 REMARK 3 T33: -0.0649 T12: -0.0916 REMARK 3 T13: -0.1108 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 10.0623 L22: 1.7110 REMARK 3 L33: 8.3612 L12: 1.5506 REMARK 3 L13: -4.8316 L23: 0.4333 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.9219 S13: 0.2168 REMARK 3 S21: 0.3434 S22: -0.0499 S23: -0.1229 REMARK 3 S31: -0.0703 S32: 0.3553 S33: -0.0626 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 58.8637 38.6214 35.9729 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.2054 REMARK 3 T33: -0.0569 T12: -0.0912 REMARK 3 T13: 0.0244 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 3.8037 L22: 27.5976 REMARK 3 L33: 6.1054 L12: 3.8442 REMARK 3 L13: -1.5865 L23: -0.5669 REMARK 3 S TENSOR REMARK 3 S11: 0.2652 S12: -0.6809 S13: -0.3293 REMARK 3 S21: 0.9483 S22: -0.2556 S23: 0.1712 REMARK 3 S31: -0.0547 S32: -0.1263 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 81.9246 57.3532 11.7441 REMARK 3 T TENSOR REMARK 3 T11: -0.0963 T22: -0.2819 REMARK 3 T33: -0.0828 T12: -0.0036 REMARK 3 T13: -0.0134 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 5.6959 L22: 1.7427 REMARK 3 L33: 6.2703 L12: -0.8420 REMARK 3 L13: -0.6656 L23: 1.1324 REMARK 3 S TENSOR REMARK 3 S11: 0.1001 S12: 0.0627 S13: 0.1765 REMARK 3 S21: 0.1376 S22: -0.0482 S23: 0.1002 REMARK 3 S31: -0.2104 S32: 0.3141 S33: -0.0519 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 66.7209 50.7098 23.0594 REMARK 3 T TENSOR REMARK 3 T11: 0.0205 T22: -0.0007 REMARK 3 T33: -0.1286 T12: -0.0943 REMARK 3 T13: -0.0493 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 31.6528 L22: 2.2689 REMARK 3 L33: 2.5415 L12: 3.8184 REMARK 3 L13: -1.5432 L23: 1.9256 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.0461 S13: -0.0850 REMARK 3 S21: 0.3090 S22: -0.1642 S23: 0.1615 REMARK 3 S31: 0.3077 S32: 0.1650 S33: 0.0841 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 59.1219 41.2868 27.8758 REMARK 3 T TENSOR REMARK 3 T11: 0.0137 T22: 0.0343 REMARK 3 T33: -0.1126 T12: -0.1186 REMARK 3 T13: 0.0215 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 9.3516 L22: 7.5193 REMARK 3 L33: 6.2081 L12: -3.0273 REMARK 3 L13: 3.4572 L23: -2.0123 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: -0.5429 S13: -0.2438 REMARK 3 S21: 0.1052 S22: -0.0414 S23: -0.2623 REMARK 3 S31: 0.2242 S32: -0.0158 S33: -0.0540 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): 68.1178 43.3028 39.1203 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.3952 REMARK 3 T33: 0.0375 T12: -0.0984 REMARK 3 T13: -0.0934 T23: 0.1242 REMARK 3 L TENSOR REMARK 3 L11: 13.2690 L22: 7.2121 REMARK 3 L33: 11.7901 L12: 0.3886 REMARK 3 L13: 2.5745 L23: 1.9035 REMARK 3 S TENSOR REMARK 3 S11: 0.3228 S12: -0.7687 S13: 0.2005 REMARK 3 S21: 1.1076 S22: 0.1733 S23: -0.8226 REMARK 3 S31: -0.6564 S32: 0.1391 S33: -0.4961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919, 0.93929, 0.97935 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : 0.65900 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M SODIUM CHLORIDE, 50MM MAGNESIUM REMARK 280 CHLORIDE, 100MM SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.87500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.87500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER. CHAINS A AND B ARE REMARK 300 RELATED BY APPROXIMATE NON-CRYSTALLOGRAPHIC SYMMETRY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 63 REMARK 465 ASP A 64 REMARK 465 ARG A 65 REMARK 465 GLY A 125 REMARK 465 HIS A 126 REMARK 465 GLY A 127 REMARK 465 ASN A 128 REMARK 465 ARG A 129 REMARK 465 PRO A 130 REMARK 465 PRO A 131 REMARK 465 ALA A 132 REMARK 465 GLY A 133 REMARK 465 ALA A 134 REMARK 465 ALA A 135 REMARK 465 THR A 136 REMARK 465 GLU A 137 REMARK 465 THR A 138 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 63 REMARK 465 ASP B 64 REMARK 465 ARG B 65 REMARK 465 GLY B 125 REMARK 465 HIS B 126 REMARK 465 GLY B 127 REMARK 465 ASN B 128 REMARK 465 ARG B 129 REMARK 465 PRO B 130 REMARK 465 PRO B 131 REMARK 465 ALA B 132 REMARK 465 GLY B 133 REMARK 465 ALA B 134 REMARK 465 ALA B 135 REMARK 465 THR B 136 REMARK 465 GLU B 137 REMARK 465 THR B 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ARG B 6 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 254 O HOH B 363 1.74 REMARK 500 N LYS A 3 O HOH A 384 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 58 CB VAL B 58 CG1 -0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 123 -75.09 -69.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 253 DBREF 2G9W A 1 138 UNP P95163 P95163_MYCTU 1 138 DBREF 2G9W B 1 138 UNP P95163 P95163_MYCTU 1 138 SEQADV 2G9W MSE A 1 UNP P95163 MET 1 MODIFIED RESIDUE SEQADV 2G9W MSE A 15 UNP P95163 MET 15 MODIFIED RESIDUE SEQADV 2G9W MSE A 46 UNP P95163 MET 46 MODIFIED RESIDUE SEQADV 2G9W ALA A 47 UNP P95163 THR 47 ENGINEERED MUTATION SEQADV 2G9W MSE A 83 UNP P95163 MET 83 MODIFIED RESIDUE SEQADV 2G9W MSE B 1 UNP P95163 MET 1 MODIFIED RESIDUE SEQADV 2G9W MSE B 15 UNP P95163 MET 15 MODIFIED RESIDUE SEQADV 2G9W MSE B 46 UNP P95163 MET 46 MODIFIED RESIDUE SEQADV 2G9W ALA B 47 UNP P95163 THR 47 ENGINEERED MUTATION SEQADV 2G9W MSE B 83 UNP P95163 MET 83 MODIFIED RESIDUE SEQRES 1 A 138 MSE ALA LYS LEU THR ARG LEU GLY ASP LEU GLU ARG ALA SEQRES 2 A 138 VAL MSE ASP HIS LEU TRP SER ARG THR GLU PRO GLN THR SEQRES 3 A 138 VAL ARG GLN VAL HIS GLU ALA LEU SER ALA ARG ARG ASP SEQRES 4 A 138 LEU ALA TYR THR THR VAL MSE ALA VAL LEU GLN ARG LEU SEQRES 5 A 138 ALA LYS LYS ASN LEU VAL LEU GLN ILE ARG ASP ASP ARG SEQRES 6 A 138 ALA HIS ARG TYR ALA PRO VAL HIS GLY ARG ASP GLU LEU SEQRES 7 A 138 VAL ALA GLY LEU MSE VAL ASP ALA LEU ALA GLN ALA GLU SEQRES 8 A 138 ASP SER GLY SER ARG GLN ALA ALA LEU VAL HIS PHE VAL SEQRES 9 A 138 GLU ARG VAL GLY ALA ASP GLU ALA ASP ALA LEU ARG ARG SEQRES 10 A 138 ALA LEU ALA GLU LEU GLU ALA GLY HIS GLY ASN ARG PRO SEQRES 11 A 138 PRO ALA GLY ALA ALA THR GLU THR SEQRES 1 B 138 MSE ALA LYS LEU THR ARG LEU GLY ASP LEU GLU ARG ALA SEQRES 2 B 138 VAL MSE ASP HIS LEU TRP SER ARG THR GLU PRO GLN THR SEQRES 3 B 138 VAL ARG GLN VAL HIS GLU ALA LEU SER ALA ARG ARG ASP SEQRES 4 B 138 LEU ALA TYR THR THR VAL MSE ALA VAL LEU GLN ARG LEU SEQRES 5 B 138 ALA LYS LYS ASN LEU VAL LEU GLN ILE ARG ASP ASP ARG SEQRES 6 B 138 ALA HIS ARG TYR ALA PRO VAL HIS GLY ARG ASP GLU LEU SEQRES 7 B 138 VAL ALA GLY LEU MSE VAL ASP ALA LEU ALA GLN ALA GLU SEQRES 8 B 138 ASP SER GLY SER ARG GLN ALA ALA LEU VAL HIS PHE VAL SEQRES 9 B 138 GLU ARG VAL GLY ALA ASP GLU ALA ASP ALA LEU ARG ARG SEQRES 10 B 138 ALA LEU ALA GLU LEU GLU ALA GLY HIS GLY ASN ARG PRO SEQRES 11 B 138 PRO ALA GLY ALA ALA THR GLU THR MODRES 2G9W MSE A 15 MET SELENOMETHIONINE MODRES 2G9W MSE A 46 MET SELENOMETHIONINE MODRES 2G9W MSE A 83 MET SELENOMETHIONINE MODRES 2G9W MSE B 15 MET SELENOMETHIONINE MODRES 2G9W MSE B 46 MET SELENOMETHIONINE MODRES 2G9W MSE B 83 MET SELENOMETHIONINE HET MSE A 15 8 HET MSE A 46 8 HET MSE A 83 8 HET MSE B 15 8 HET MSE B 46 8 HET MSE B 83 8 HET CL A 251 1 HET CL B 252 1 HET CL B 253 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *243(H2 O) HELIX 1 1 LYS A 3 LEU A 7 5 5 HELIX 2 2 GLY A 8 SER A 20 1 13 HELIX 3 3 VAL A 27 SER A 35 1 9 HELIX 4 4 ALA A 41 LYS A 55 1 15 HELIX 5 5 GLY A 74 ALA A 88 1 15 HELIX 6 6 ASP A 92 VAL A 107 1 16 HELIX 7 7 GLY A 108 ALA A 124 1 17 HELIX 8 8 GLY B 8 SER B 20 1 13 HELIX 9 9 VAL B 27 SER B 35 1 9 HELIX 10 10 ALA B 41 LYS B 55 1 15 HELIX 11 11 GLY B 74 ALA B 88 1 15 HELIX 12 12 ASP B 92 VAL B 107 1 16 HELIX 13 13 GLY B 108 ALA B 124 1 17 SHEET 1 A 3 GLN A 25 THR A 26 0 SHEET 2 A 3 ARG A 68 PRO A 71 -1 O TYR A 69 N GLN A 25 SHEET 3 A 3 VAL A 58 ILE A 61 -1 N ILE A 61 O ARG A 68 SHEET 1 B 3 GLN B 25 THR B 26 0 SHEET 2 B 3 ARG B 68 PRO B 71 -1 O TYR B 69 N GLN B 25 SHEET 3 B 3 VAL B 58 ILE B 61 -1 N ILE B 61 O ARG B 68 LINK C VAL A 14 N MSE A 15 1555 1555 1.34 LINK C MSE A 15 N ASP A 16 1555 1555 1.33 LINK C VAL A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N ALA A 47 1555 1555 1.34 LINK C LEU A 82 N MSE A 83 1555 1555 1.34 LINK C MSE A 83 N VAL A 84 1555 1555 1.32 LINK C VAL B 14 N MSE B 15 1555 1555 1.32 LINK C MSE B 15 N ASP B 16 1555 1555 1.31 LINK C VAL B 45 N MSE B 46 1555 1555 1.31 LINK C MSE B 46 N ALA B 47 1555 1555 1.32 LINK C LEU B 82 N MSE B 83 1555 1555 1.34 LINK C MSE B 83 N VAL B 84 1555 1555 1.33 SITE 1 AC1 5 ALA A 41 THR A 44 GLY B 8 LEU B 10 SITE 2 AC1 5 GLU B 11 SITE 1 AC2 5 GLY A 8 LEU A 10 GLU A 11 ALA B 41 SITE 2 AC2 5 THR B 44 SITE 1 AC3 5 ARG A 75 HOH A 313 ALA B 90 GLU B 91 SITE 2 AC3 5 SER B 95 CRYST1 60.580 64.330 75.750 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016507 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013201 0.00000