HEADER TRANSFERASE 08-MAR-06 2GA9 TITLE CRYSTAL STRUCTURE OF THE HETERODIMERIC VACCINIA VIRUS POLYADENYLATE TITLE 2 POLYMERASE WITH BOUND ATP-GAMMA-S COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYA, POLYMERASE REGULATORY SUBUNIT, POLYA, POLYMERASE COMPND 5 SMALL SUBUNIT, PAP-S, VP39; COMPND 6 EC: 2.1.1.57; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POLY(A) POLYMERASE CATALYTIC SUBUNIT; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: POLYA, POLYMERASE LARGE SUBUNIT, PAP-L, VP55; COMPND 13 EC: 2.7.7.19; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PPG177; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 11 ORGANISM_TAXID: 10245; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA KEYWDS POLYADENYLATE POLYMERASE, NUCLEOTIDYLTRANSFERASE, POXVIRUS, KEYWDS 2 HETERODIMER, PROCESSIVITY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.MOURE,B.R.BOWMAN,P.D.GERSHON,F.A.QUIOCHO REVDAT 6 14-FEB-24 2GA9 1 REMARK REVDAT 5 20-OCT-21 2GA9 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2GA9 1 REMARK REVDAT 3 15-FEB-12 2GA9 1 HETATM HETNAM HETSYN REMARK REVDAT 3 2 1 VERSN REVDAT 2 24-FEB-09 2GA9 1 VERSN REVDAT 1 16-MAY-06 2GA9 0 JRNL AUTH C.M.MOURE,B.R.BOWMAN,P.D.GERSHON,F.A.QUIOCHO JRNL TITL CRYSTAL STRUCTURES OF THE VACCINIA VIRUS POLYADENYLATE JRNL TITL 2 POLYMERASE HETERODIMER: INSIGHTS INTO ATP SELECTIVITY AND JRNL TITL 3 PROCESSIVITY. JRNL REF MOL.CELL V. 22 339 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16678106 JRNL DOI 10.1016/J.MOLCEL.2006.03.015 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 36590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1819 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.45 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2617 REMARK 3 BIN FREE R VALUE : 0.3079 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6009 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.61100 REMARK 3 B22 (A**2) : 2.28400 REMARK 3 B33 (A**2) : 0.32800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 2.30 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.617 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 35.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : SAP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(11) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.240 M CACL2, 5% REMARK 280 GLYCEROL, PH 8.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.02500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.85000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.85000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.02500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 27 REMARK 465 ASN A 28 REMARK 465 GLU A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 LYS A 32 REMARK 465 ALA A 142 REMARK 465 ALA A 143 REMARK 465 GLY A 144 REMARK 465 PRO D 11 REMARK 465 LYS D 118 REMARK 465 ALA D 119 REMARK 465 PRO D 120 REMARK 465 ASN D 121 REMARK 465 VAL D 122 REMARK 465 ILE D 123 REMARK 465 SER D 124 REMARK 465 SER D 125 REMARK 465 LYS D 126 REMARK 465 ILE D 127 REMARK 465 SER D 128 REMARK 465 TYR D 129 REMARK 465 ILE D 150 REMARK 465 ASP D 151 REMARK 465 LYS D 152 REMARK 465 ALA D 153 REMARK 465 LYS D 154 REMARK 465 VAL D 155 REMARK 465 MET D 156 REMARK 465 GLY D 157 REMARK 465 ARG D 158 REMARK 465 HIS D 159 REMARK 465 ASN D 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 528 O HOH D 576 2.04 REMARK 500 OE2 GLU D 314 NH2 ARG D 317 2.14 REMARK 500 O HOH A 369 O HOH A 389 2.16 REMARK 500 O ASN D 329 N MET D 331 2.17 REMARK 500 O HOH A 329 O HOH A 355 2.18 REMARK 500 CA ILE D 13 O HOH D 555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 235 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG D 328 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 50.58 -169.61 REMARK 500 PRO A 24 -25.21 -38.22 REMARK 500 ARG A 114 153.13 176.38 REMARK 500 ALA A 140 -144.89 -116.89 REMARK 500 ASN A 146 -153.36 56.67 REMARK 500 ILE A 242 -69.85 -92.84 REMARK 500 THR D 86 -9.52 -58.17 REMARK 500 PRO D 196 -18.65 -46.93 REMARK 500 ASN D 209 41.72 -145.49 REMARK 500 ILE D 252 145.62 -171.21 REMARK 500 ARG D 328 96.30 -173.59 REMARK 500 ASN D 330 -4.81 41.03 REMARK 500 MET D 331 -153.38 -65.49 REMARK 500 PRO D 332 63.30 21.36 REMARK 500 LYS D 334 124.43 -11.59 REMARK 500 GLU D 382 -137.39 49.63 REMARK 500 SER D 387 153.68 177.52 REMARK 500 TYR D 435 -19.41 -160.53 REMARK 500 SER D 456 -179.33 -177.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 204 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 480 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 202 OD2 REMARK 620 2 ASP D 204 OD1 76.3 REMARK 620 3 ASP D 204 OD2 109.6 46.0 REMARK 620 4 AGS D 482 O1B 134.2 136.4 90.6 REMARK 620 5 AGS D 482 O3B 108.5 160.6 139.9 53.1 REMARK 620 6 AGS D 482 O3A 170.6 107.8 78.5 48.0 64.8 REMARK 620 7 HOH D 494 O 65.8 92.7 78.7 79.4 106.5 121.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 481 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 202 OD1 REMARK 620 2 ASP D 204 OD1 84.4 REMARK 620 3 HOH D 621 O 143.7 73.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS D 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS D 483 DBREF 2GA9 A 1 297 UNP P07617 PAP2_VACCV 1 297 DBREF 2GA9 D 11 479 UNP P23371 PAP1_VACCV 11 479 SEQADV 2GA9 ALA A 140 UNP P07617 ARG 140 ENGINEERED MUTATION SEQADV 2GA9 ALA A 142 UNP P07617 LYS 142 ENGINEERED MUTATION SEQADV 2GA9 ALA A 143 UNP P07617 ARG 143 ENGINEERED MUTATION SEQADV 2GA9 SER D 36 UNP P23371 LEU 36 VARIANT SEQRES 1 A 297 MET ASP VAL VAL SER LEU ASP LYS PRO PHE MET TYR PHE SEQRES 2 A 297 GLU GLU ILE ASP ASN GLU LEU ASP TYR GLU PRO GLU SER SEQRES 3 A 297 ALA ASN GLU VAL ALA LYS LYS LEU PRO TYR GLN GLY GLN SEQRES 4 A 297 LEU LYS LEU LEU LEU GLY GLU LEU PHE PHE LEU SER LYS SEQRES 5 A 297 LEU GLN ARG HIS GLY ILE LEU ASP GLY ALA THR VAL VAL SEQRES 6 A 297 TYR ILE GLY SER ALA PRO GLY THR HIS ILE ARG TYR LEU SEQRES 7 A 297 ARG ASP HIS PHE TYR ASN LEU GLY VAL ILE ILE LYS TRP SEQRES 8 A 297 MET LEU ILE ASP GLY ARG HIS HIS ASP PRO ILE LEU ASN SEQRES 9 A 297 GLY LEU ARG ASP VAL THR LEU VAL THR ARG PHE VAL ASP SEQRES 10 A 297 GLU GLU TYR LEU ARG SER ILE LYS LYS GLN LEU HIS PRO SEQRES 11 A 297 SER LYS ILE ILE LEU ILE SER ASP VAL ALA SER ALA ALA SEQRES 12 A 297 GLY GLY ASN GLU PRO SER THR ALA ASP LEU LEU SER ASN SEQRES 13 A 297 TYR ALA LEU GLN ASN VAL MET ILE SER ILE LEU ASN PRO SEQRES 14 A 297 VAL ALA SER SER LEU LYS TRP ARG CYS PRO PHE PRO ASP SEQRES 15 A 297 GLN TRP ILE LYS ASP PHE TYR ILE PRO HIS GLY ASN LYS SEQRES 16 A 297 MET LEU GLN PRO PHE ALA PRO SER TYR SER ALA GLU MET SEQRES 17 A 297 ARG LEU LEU SER ILE TYR THR GLY GLU ASN MET ARG LEU SEQRES 18 A 297 THR ARG VAL THR LYS SER ASP ALA VAL ASN TYR GLU LYS SEQRES 19 A 297 LYS MET TYR TYR LEU ASN LYS ILE VAL ARG ASN LYS VAL SEQRES 20 A 297 VAL VAL ASN PHE ASP TYR PRO ASN GLN GLU TYR ASP TYR SEQRES 21 A 297 PHE HIS MET TYR PHE MET LEU ARG THR VAL TYR CYS ASN SEQRES 22 A 297 LYS THR PHE PRO THR THR LYS ALA LYS VAL LEU PHE LEU SEQRES 23 A 297 GLN GLN SER ILE PHE ARG PHE LEU ASN ILE PRO SEQRES 1 D 469 PRO ASN ILE THR LEU LYS ILE ILE GLU THR TYR LEU GLY SEQRES 2 D 469 ARG VAL PRO SER VAL ASN GLU TYR HIS MET LEU LYS SER SEQRES 3 D 469 GLN ALA ARG ASN ILE GLN LYS ILE THR VAL PHE ASN LYS SEQRES 4 D 469 ASP ILE PHE VAL SER LEU VAL LYS LYS ASN LYS LYS ARG SEQRES 5 D 469 PHE PHE SER ASP VAL ASN THR SER ALA SER GLU ILE LYS SEQRES 6 D 469 ASP ARG ILE LEU SER TYR PHE SER LYS GLN THR GLN THR SEQRES 7 D 469 TYR ASN ILE GLY LYS LEU PHE THR ILE ILE GLU LEU GLN SEQRES 8 D 469 SER VAL LEU VAL THR THR TYR THR ASP ILE LEU GLY VAL SEQRES 9 D 469 LEU THR ILE LYS ALA PRO ASN VAL ILE SER SER LYS ILE SEQRES 10 D 469 SER TYR ASN VAL THR SER MET GLU GLU LEU ALA ARG ASP SEQRES 11 D 469 MET LEU ASN SER MET ASN VAL ALA VAL ILE ASP LYS ALA SEQRES 12 D 469 LYS VAL MET GLY ARG HIS ASN VAL SER SER LEU VAL LYS SEQRES 13 D 469 ASN VAL ASN LYS LEU MET GLU GLU TYR LEU ARG ARG HIS SEQRES 14 D 469 ASN LYS SER CYS ILE CYS TYR GLY SER TYR SER LEU TYR SEQRES 15 D 469 LEU ILE ASN PRO ASN ILE ARG TYR GLY ASP ILE ASP ILE SEQRES 16 D 469 LEU GLN THR ASN SER ARG THR PHE LEU ILE ASP LEU ALA SEQRES 17 D 469 PHE LEU ILE LYS PHE ILE THR GLY ASN ASN ILE ILE LEU SEQRES 18 D 469 SER LYS ILE PRO TYR LEU ARG ASN TYR MET VAL ILE LYS SEQRES 19 D 469 ASP GLU ASN ASP ASN HIS ILE ILE ASP SER PHE ASN ILE SEQRES 20 D 469 ARG GLN ASP THR MET ASN VAL VAL PRO LYS ILE PHE ILE SEQRES 21 D 469 ASP ASN ILE TYR ILE VAL ASP PRO THR PHE GLN LEU LEU SEQRES 22 D 469 ASN MET ILE LYS MET PHE SER GLN ILE ASP ARG LEU GLU SEQRES 23 D 469 ASP LEU SER LYS ASP PRO GLU LYS PHE ASN ALA ARG MET SEQRES 24 D 469 ALA THR MET LEU GLU TYR VAL ARG TYR THR HIS GLY ILE SEQRES 25 D 469 VAL PHE ASP GLY LYS ARG ASN ASN MET PRO MET LYS CYS SEQRES 26 D 469 ILE ILE ASP GLU ASN ASN ARG ILE VAL THR VAL THR THR SEQRES 27 D 469 LYS ASP TYR PHE SER PHE LYS LYS CYS LEU VAL TYR LEU SEQRES 28 D 469 ASP GLU ASN VAL LEU SER SER ASP ILE LEU ASP LEU ASN SEQRES 29 D 469 ALA ASP THR SER CYS ASP PHE GLU SER VAL THR ASN SER SEQRES 30 D 469 VAL TYR LEU ILE HIS ASP ASN ILE MET TYR THR TYR PHE SEQRES 31 D 469 SER ASN THR ILE LEU LEU SER ASP LYS GLY LYS VAL HIS SEQRES 32 D 469 GLU ILE SER ALA ARG GLY LEU CYS ALA HIS ILE LEU LEU SEQRES 33 D 469 TYR GLN MET LEU THR SER GLY GLU TYR LYS GLN CYS LEU SEQRES 34 D 469 SER ASP LEU LEU ASN SER MET MET ASN ARG ASP LYS ILE SEQRES 35 D 469 PRO ILE TYR SER HIS THR GLU ARG ASP LYS LYS PRO GLY SEQRES 36 D 469 ARG HIS GLY PHE ILE ASN ILE GLU LYS ASP ILE ILE VAL SEQRES 37 D 469 PHE HET CA D 480 1 HET CA D 481 1 HET AGS D 482 31 HET AGS D 483 31 HETNAM CA CALCIUM ION HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 CA 2(CA 2+) FORMUL 5 AGS 2(C10 H16 N5 O12 P3 S) FORMUL 7 HOH *260(H2 O) HELIX 1 1 TYR A 12 ILE A 16 5 5 HELIX 2 2 TYR A 36 HIS A 56 1 21 HELIX 3 3 HIS A 74 LEU A 85 1 12 HELIX 4 4 ASP A 100 ASN A 104 5 5 HELIX 5 5 ASP A 117 HIS A 129 1 13 HELIX 6 6 SER A 149 ASN A 168 1 20 HELIX 7 7 PHE A 180 TRP A 184 5 5 HELIX 8 8 THR A 225 ILE A 242 1 18 HELIX 9 9 VAL A 243 LYS A 246 5 4 HELIX 10 10 GLU A 257 ARG A 268 1 12 HELIX 11 11 THR A 278 ASN A 295 1 18 HELIX 12 12 ASN D 12 GLY D 23 1 12 HELIX 13 13 SER D 27 LYS D 35 1 9 HELIX 14 14 GLN D 37 PHE D 47 1 11 HELIX 15 15 ASN D 48 PHE D 64 1 17 HELIX 16 16 SER D 70 PHE D 82 1 13 HELIX 17 17 SER D 83 THR D 88 5 6 HELIX 18 18 ASN D 90 LEU D 112 1 23 HELIX 19 19 GLY D 113 ILE D 117 5 5 HELIX 20 20 ASN D 130 SER D 133 5 4 HELIX 21 21 MET D 134 ASN D 146 1 13 HELIX 22 22 SER D 163 HIS D 179 1 17 HELIX 23 23 GLY D 187 LEU D 193 1 7 HELIX 24 24 ASN D 209 GLY D 226 1 18 HELIX 25 25 ARG D 258 VAL D 265 1 8 HELIX 26 26 ASP D 277 PHE D 289 1 13 HELIX 27 27 GLN D 291 ASP D 301 1 11 HELIX 28 28 ASP D 301 GLY D 321 1 21 HELIX 29 29 ASP D 362 LEU D 373 1 12 HELIX 30 30 GLU D 382 THR D 385 5 4 HELIX 31 31 HIS D 413 THR D 431 1 19 HELIX 32 32 TYR D 435 SER D 445 1 11 SHEET 1 A 2 VAL A 3 VAL A 4 0 SHEET 2 A 2 VAL A 247 VAL A 248 1 O VAL A 247 N VAL A 4 SHEET 1 B 7 VAL A 109 THR A 113 0 SHEET 2 B 7 LYS A 90 ASP A 95 1 N LEU A 93 O VAL A 112 SHEET 3 B 7 THR A 63 ILE A 67 1 N TYR A 66 O ILE A 94 SHEET 4 B 7 ILE A 133 SER A 137 1 O ILE A 134 N VAL A 65 SHEET 5 B 7 ALA A 171 TRP A 176 1 O SER A 173 N SER A 137 SHEET 6 B 7 MET A 208 ILE A 213 -1 O LEU A 210 N LEU A 174 SHEET 7 B 7 ASN A 194 MET A 196 -1 N ASN A 194 O LEU A 211 SHEET 1 C 2 PHE A 188 PRO A 191 0 SHEET 2 C 2 LEU A 221 VAL A 224 -1 O VAL A 224 N PHE A 188 SHEET 1 D 7 CYS D 183 TYR D 186 0 SHEET 2 D 7 ASP D 204 GLN D 207 -1 O LEU D 206 N ILE D 184 SHEET 3 D 7 HIS D 250 ASN D 256 1 O PHE D 255 N GLN D 207 SHEET 4 D 7 TYR D 240 LYS D 244 -1 N ILE D 243 O ILE D 252 SHEET 5 D 7 ILE D 230 LYS D 233 -1 N ILE D 230 O LYS D 244 SHEET 6 D 7 GLY D 468 ASN D 471 -1 O GLY D 468 N LYS D 233 SHEET 7 D 7 ILE D 476 VAL D 478 -1 O ILE D 476 N ASN D 471 SHEET 1 E 2 LYS D 267 ILE D 270 0 SHEET 2 E 2 ILE D 273 VAL D 276 -1 O ILE D 273 N ILE D 270 SHEET 1 F 6 CYS D 335 ASP D 338 0 SHEET 2 F 6 ILE D 343 THR D 347 -1 O THR D 345 N ILE D 336 SHEET 3 F 6 LYS D 356 TYR D 360 -1 O VAL D 359 N VAL D 344 SHEET 4 F 6 ILE D 395 TYR D 399 1 O THR D 398 N TYR D 360 SHEET 5 F 6 VAL D 388 HIS D 392 -1 N LEU D 390 O TYR D 397 SHEET 6 F 6 CYS D 379 ASP D 380 -1 N CYS D 379 O TYR D 389 SHEET 1 G 3 LYS D 411 VAL D 412 0 SHEET 2 G 3 LEU D 405 ASP D 408 -1 N ASP D 408 O LYS D 411 SHEET 3 G 3 SER D 456 HIS D 457 -1 O SER D 456 N LEU D 406 LINK OD2 ASP D 202 CA CA D 480 1555 1555 2.60 LINK OD1 ASP D 202 CA CA D 481 1555 1555 2.43 LINK OD1 ASP D 204 CA CA D 480 1555 1555 2.98 LINK OD2 ASP D 204 CA CA D 480 1555 1555 2.50 LINK OD1 ASP D 204 CA CA D 481 1555 1555 2.31 LINK CA CA D 480 O1B AGS D 482 1555 1555 3.21 LINK CA CA D 480 O3B AGS D 482 1555 1555 2.23 LINK CA CA D 480 O3A AGS D 482 1555 1555 2.46 LINK CA CA D 480 O HOH D 494 1555 1555 2.35 LINK CA CA D 481 O HOH D 621 1555 1555 2.21 CISPEP 1 ALA A 70 PRO A 71 0 0.33 CISPEP 2 HIS A 129 PRO A 130 0 -0.15 SITE 1 AC1 4 ASP D 202 ASP D 204 AGS D 482 HOH D 494 SITE 1 AC2 3 ASP D 202 ASP D 204 HOH D 621 SITE 1 AC3 16 TYR D 186 GLY D 187 SER D 188 ASP D 204 SITE 2 AC3 16 GLN D 281 ASN D 284 MET D 285 MET D 288 SITE 3 AC3 16 ARG D 294 LYS D 304 ASN D 402 CA D 480 SITE 4 AC3 16 HOH D 492 HOH D 551 HOH D 575 HOH D 607 SITE 1 AC4 8 PHE D 47 ASN D 48 ILE D 51 PHE D 52 SITE 2 AC4 8 LEU D 55 THR D 109 GLY D 113 THR D 116 CRYST1 70.050 91.690 133.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007480 0.00000