HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-MAR-06 2GBS TITLE NMR STRUCTURE OF RPA0253 FROM RHODOPSEUDOMONAS PALUSTRIS. NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET RPR3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RPA0253; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 GENE: RPA0253; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL-GOLD+PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21 KEYWDS ALPHA-BETA, RPR3, NESG, STRUCTURAL GENOMICS, RPA0253, COG2947, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,K.CONOVER,Y.CHEN,L.C.MA,M.CIANO,R.XIAO, AUTHOR 2 T.B.ACTON,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 5 20-OCT-21 2GBS 1 REMARK SEQADV REVDAT 4 13-JUL-11 2GBS 1 VERSN REVDAT 3 09-JUN-10 2GBS 1 JRNL REVDAT 2 24-FEB-09 2GBS 1 VERSN REVDAT 1 11-APR-06 2GBS 0 JRNL AUTH C.BERTONATI,M.PUNTA,M.FISCHER,G.YACHDAV,F.FOROUHAR,W.ZHOU, JRNL AUTH 2 A.P.KUZIN,J.SEETHARAMAN,M.ABASHIDZE,T.A.RAMELOT,M.A.KENNEDY, JRNL AUTH 3 J.R.CORT,A.BELACHEW,J.F.HUNT,L.TONG,G.T.MONTELIONE,B.ROST JRNL TITL STRUCTURAL GENOMICS REVEALS EVE AS A NEW ASCH/PUA-RELATED JRNL TITL 2 DOMAIN. JRNL REF PROTEINS V. 75 760 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19191354 JRNL DOI 10.1002/PROT.22287 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.1, CNS 1.1 REMARK 3 AUTHORS : T.D. GODDARD AND D.G. KNELLER (SPARKY), A. REMARK 3 BRUNGER, G.L. WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1690 RESTRAINTS. 1512 ARE REMARK 3 NOE-DERIVED; SEQUENTIAL [(I-J)=1] = 201; MEDIUM RANGE [1<(I-J)<5] = REMARK 3 411; LONG RANGE [(I-J)>=5] = 900; HYDROGEN BOND RESTRAINTS = 80 REMARK 3 (2 PER H-BOND); NUMBER OF NOE RESTRAINTS PER RESIDUE = 11.0 REMARK 3 (RESIDES 2-138); DIHEDRAL-ANGLE RESTRAINTS = 178 (89 PHI, 89 PSI); REMARK 3 TOTAL NUMBER OF RESTRAINTS PER RESIDUE = 12.2 (RESIDES 1-138); REMARK 3 NUMBER OF LONG RANGE RESTRAINTS PER RESIDUE = 6.5; NUMBER OF REMARK 3 STRUCTURES COMPUTED = 20; NUMBER OF STRUCTURES USED = 20. AVERAGE REMARK 3 DISTANCE VIOLATIONS >0.1 ANG = 0; AVERAGE RMS DISTANCE VIOLATION / REMARK 3 CONSTRAINT = 0.001 ANG.; MAXIMUM DISTANCE VIOLATION 0.038. REMARK 3 AVERAGE DIHEDRAL ANGLE VIOLATIONS: >1 DEG = 0; MAX DIHEDRAL ANGLE REMARK 3 VIOLATION = 0.73; AVERAGE RMS ANGLE VIOLATION / CONSTRAINT = 0.03 REMARK 3 DEG. RMSD VALUES: BACKBONE ATOMS (N,C,C', RESIDUES 2-136) = 0.57 REMARK 3 ANG; ALL HEAVY ATOMS = 0.93 ANG; PROCHECK (RESIDUES 2-136): MOST REMARK 3 FAVORED REGIONS = 90%; ADDITIONAL ALLOWED REGIONS = 9%; GENEROUSLY REMARK 3 ALLOWED REGIONS = 0%; DISALLOWED REGIONS = 1%. REMARK 3 REMARK 3 THE 8 RESIDUE C-TERMINAL HIS TAG (LEHHHHHH) WAS INCLUDED IN THE REMARK 3 STRUCTURE CALCULATION. REMARK 4 REMARK 4 2GBS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036929. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM RPA0253, U-15N, 13C; 20MM REMARK 210 MES, 100MM NACL, 5MM CACL2, 10 REMARK 210 MM DTT, 0.02% NAN3; 95% H2O, 5% REMARK 210 D2O, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE LINUX9, AUTOSTRUCTURE REMARK 210 2.1.1, X-PLOR XPLOR-NIH-2.10, REMARK 210 VNMR 6.1C REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS, CNS WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 21 OE2 GLU A 26 1.57 REMARK 500 OD2 ASP A 89 HZ1 LYS A 90 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 55 -74.23 72.62 REMARK 500 1 ASP A 89 -72.69 -83.37 REMARK 500 1 LEU A 137 42.08 -88.93 REMARK 500 2 VAL A 12 -61.20 -105.40 REMARK 500 2 ASN A 55 -65.61 71.84 REMARK 500 2 LYS A 58 74.55 54.68 REMARK 500 2 ALA A 88 99.14 -64.68 REMARK 500 2 HIS A 140 -68.18 69.48 REMARK 500 2 HIS A 141 -40.84 -175.65 REMARK 500 2 HIS A 142 129.80 72.86 REMARK 500 2 HIS A 143 96.98 37.68 REMARK 500 3 VAL A 12 -68.25 -94.37 REMARK 500 3 ASN A 55 -74.45 70.33 REMARK 500 3 ASP A 89 -71.99 -94.16 REMARK 500 3 LEU A 138 -67.93 -155.48 REMARK 500 3 HIS A 141 -9.41 -176.32 REMARK 500 4 ASN A 55 -82.45 66.90 REMARK 500 4 HIS A 140 134.00 73.96 REMARK 500 4 HIS A 144 119.13 -178.41 REMARK 500 5 ASN A 55 -64.83 70.45 REMARK 500 5 PRO A 105 -7.73 -58.64 REMARK 500 5 LYS A 114 -55.28 -130.03 REMARK 500 5 HIS A 140 -76.77 67.81 REMARK 500 5 HIS A 141 -56.78 -158.85 REMARK 500 5 HIS A 142 149.65 70.44 REMARK 500 5 HIS A 143 94.40 59.10 REMARK 500 5 HIS A 144 70.86 -108.70 REMARK 500 6 ASN A 55 -80.18 66.59 REMARK 500 6 ASP A 89 -74.37 -79.15 REMARK 500 6 LYS A 114 -60.81 -121.96 REMARK 500 7 VAL A 12 -63.46 -94.69 REMARK 500 7 ASN A 55 -72.07 71.16 REMARK 500 7 GLU A 69 -165.96 -69.55 REMARK 500 7 ALA A 70 104.66 -48.62 REMARK 500 7 PHE A 81 -165.69 -108.79 REMARK 500 7 HIS A 141 -103.26 52.46 REMARK 500 7 HIS A 142 18.85 -172.78 REMARK 500 8 ASN A 55 -71.23 67.40 REMARK 500 8 SER A 78 30.54 -165.79 REMARK 500 8 LYS A 80 -25.36 -169.02 REMARK 500 8 LEU A 138 19.59 -153.60 REMARK 500 9 ASN A 55 -69.75 70.45 REMARK 500 9 ARG A 68 118.06 -165.55 REMARK 500 9 LYS A 114 -60.37 -103.11 REMARK 500 10 VAL A 12 -60.51 -103.36 REMARK 500 10 ASN A 55 -69.53 69.35 REMARK 500 10 LYS A 58 70.45 55.08 REMARK 500 10 HIS A 144 24.86 -152.02 REMARK 500 11 VAL A 12 -61.94 -124.35 REMARK 500 11 ASN A 55 -76.70 68.72 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7004 RELATED DB: BMRB REMARK 900 RELATED ID: RPR3 RELATED DB: TARGETDB DBREF 2GBS A 1 137 UNP Q6ND56 Q6ND56_RHOPA 1 137 SEQADV 2GBS VAL A 1 UNP Q6ND56 MET 1 ENGINEERED MUTATION SEQADV 2GBS LEU A 138 UNP Q6ND56 CLONING ARTIFACT SEQADV 2GBS GLU A 139 UNP Q6ND56 CLONING ARTIFACT SEQADV 2GBS HIS A 140 UNP Q6ND56 CLONING ARTIFACT SEQADV 2GBS HIS A 141 UNP Q6ND56 CLONING ARTIFACT SEQADV 2GBS HIS A 142 UNP Q6ND56 CLONING ARTIFACT SEQADV 2GBS HIS A 143 UNP Q6ND56 CLONING ARTIFACT SEQADV 2GBS HIS A 144 UNP Q6ND56 CLONING ARTIFACT SEQADV 2GBS HIS A 145 UNP Q6ND56 CLONING ARTIFACT SEQRES 1 A 145 VAL ALA TYR TRP LEU VAL LYS SER GLU PRO SER VAL TRP SEQRES 2 A 145 SER TRP ASP GLN GLN VAL ALA LYS GLY ALA ALA GLY GLU SEQRES 3 A 145 ALA TRP THR GLY VAL ARG ASN HIS SER ALA LYS LEU HIS SEQRES 4 A 145 MET VAL ALA MET ARG ARG GLY ASP ARG ALA PHE TYR TYR SEQRES 5 A 145 HIS SER ASN GLU GLY LYS GLU ILE VAL GLY ILE ALA GLU SEQRES 6 A 145 ILE ILE ARG GLU ALA TYR PRO ASP PRO THR ASP ALA SER SEQRES 7 A 145 GLY LYS PHE VAL CYS VAL ASP ILE LYS ALA ASP LYS PRO SEQRES 8 A 145 LEU LYS THR PRO VAL THR LEU ALA ALA VAL LYS ALA GLU SEQRES 9 A 145 PRO ARG LEU ALA ASP MET ALA LEU MET LYS TYR SER ARG SEQRES 10 A 145 LEU SER VAL GLN PRO VAL THR ALA GLU GLU TRP LYS LEU SEQRES 11 A 145 VAL CYS LYS MET GLY GLY LEU LEU GLU HIS HIS HIS HIS SEQRES 12 A 145 HIS HIS HELIX 1 1 SER A 14 ALA A 20 1 7 HELIX 2 2 ASN A 33 MET A 43 1 11 HELIX 3 3 LEU A 98 GLU A 104 1 7 HELIX 4 4 ARG A 106 ASP A 109 5 4 HELIX 5 5 MET A 110 TYR A 115 1 6 HELIX 6 6 THR A 124 GLY A 135 1 12 SHEET 1 A 6 GLU A 26 ALA A 27 0 SHEET 2 A 6 VAL A 82 THR A 97 -1 O ILE A 86 N GLU A 26 SHEET 3 A 6 GLU A 59 PRO A 72 -1 N ILE A 67 O ASP A 85 SHEET 4 A 6 ARG A 48 HIS A 53 -1 N HIS A 53 O GLU A 59 SHEET 5 A 6 TYR A 3 SER A 8 1 N SER A 8 O TYR A 52 SHEET 6 A 6 GLN A 121 VAL A 123 -1 O VAL A 123 N TYR A 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1