HEADER SIGNALING PROTEIN 14-MAR-06 2GCO TITLE CRYSTAL STRUCTURE OF THE HUMAN RHOC-GPPNHP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHOC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H9; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RESIDUE 107 IN THIS CHAIN IS MODIFIED TO S-OXY COMPND 7 CYSTEINE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHOC; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: H9; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RHOC, ARH9, ARHC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RHOC, ARH9, ARHC; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RP; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS GTP-BINDING PROTEIN, GTPASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.G.DIAS,R.A.CERIONE REVDAT 5 30-AUG-23 2GCO 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2GCO 1 VERSN REVDAT 3 24-FEB-09 2GCO 1 VERSN REVDAT 2 12-JUN-07 2GCO 1 JRNL REVDAT 1 27-MAR-07 2GCO 0 JRNL AUTH S.M.G.DIAS,R.A.CERIONE JRNL TITL X-RAY CRYSTAL STRUCTURES REVEAL TWO ACTIVATED STATES FOR JRNL TITL 2 RHOC. JRNL REF BIOCHEMISTRY V. 46 6547 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17497936 JRNL DOI 10.1021/BI700035P REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 75014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 502 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3144 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4283 ; 1.360 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 5.128 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;32.996 ;23.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 563 ;11.720 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2358 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1640 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2138 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 469 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.040 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3078 ; 1.101 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 1.626 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1191 ; 2.411 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 180 REMARK 3 RESIDUE RANGE : A -12 A -4 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8270 -6.3720 30.9460 REMARK 3 T TENSOR REMARK 3 T11: -0.0398 T22: -0.0137 REMARK 3 T33: -0.0232 T12: -0.0066 REMARK 3 T13: 0.0032 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.5196 L22: 0.4431 REMARK 3 L33: 1.4833 L12: -0.1407 REMARK 3 L13: -0.0156 L23: 0.0824 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: -0.0242 S13: -0.0491 REMARK 3 S21: -0.0017 S22: 0.0262 S23: 0.0015 REMARK 3 S31: 0.0508 S32: -0.0680 S33: -0.0335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 180 REMARK 3 RESIDUE RANGE : B -11 B -4 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8220 21.9650 10.2740 REMARK 3 T TENSOR REMARK 3 T11: -0.0391 T22: -0.0160 REMARK 3 T33: -0.0188 T12: 0.0048 REMARK 3 T13: -0.0012 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.5099 L22: 0.4218 REMARK 3 L33: 1.4102 L12: 0.0430 REMARK 3 L13: 0.2846 L23: 0.0050 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.0117 S13: 0.0343 REMARK 3 S21: 0.0289 S22: 0.0206 S23: -0.0018 REMARK 3 S31: -0.0443 S32: -0.0696 S33: -0.0309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 82.903 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : 0.50800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Z2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.2M SODIUM ACETATE,1.2% REMARK 280 INOSITOL, 0.1M SODIUM CACODYLATE, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.04600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.82250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.04600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.82250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1068 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 181 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 465 TYR B 34 REMARK 465 VAL B 181 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 33 -95.56 -111.96 REMARK 500 LYS A 98 -56.86 -120.27 REMARK 500 LYS A 164 -3.98 76.79 REMARK 500 LYS B 98 -55.92 -120.66 REMARK 500 LYS B 164 -6.56 79.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 19 OG1 REMARK 620 2 THR A 37 O 85.3 REMARK 620 3 GNP A1001 O2G 174.3 91.2 REMARK 620 4 GNP A1001 O2B 88.3 170.5 95.7 REMARK 620 5 HOH A1049 O 89.8 86.4 94.5 86.5 REMARK 620 6 HOH A1080 O 85.2 92.1 90.4 94.4 174.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 19 OG1 REMARK 620 2 THR B 37 O 86.4 REMARK 620 3 GNP B1003 O2G 175.4 90.5 REMARK 620 4 GNP B1003 O2B 90.6 173.2 92.8 REMARK 620 5 HOH B1027 O 84.7 93.1 92.1 92.8 REMARK 620 6 HOH B1059 O 90.5 85.1 92.7 88.8 174.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GCN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RHOC-GDP COMPLEX REMARK 900 RELATED ID: 2GCP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RHOC-GSP COMPLEX DBREF 2GCO A 1 181 UNP P08134 RHOC_HUMAN 1 181 DBREF 2GCO B 1 181 UNP P08134 RHOC_HUMAN 1 181 SEQADV 2GCO MET A -19 UNP P08134 CLONING ARTIFACT SEQADV 2GCO GLY A -18 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER A -17 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER A -16 UNP P08134 CLONING ARTIFACT SEQADV 2GCO HIS A -15 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS A -14 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS A -13 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS A -12 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS A -11 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS A -10 UNP P08134 EXPRESSION TAG SEQADV 2GCO SER A -9 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER A -8 UNP P08134 CLONING ARTIFACT SEQADV 2GCO GLY A -7 UNP P08134 CLONING ARTIFACT SEQADV 2GCO LEU A -6 UNP P08134 CLONING ARTIFACT SEQADV 2GCO VAL A -5 UNP P08134 CLONING ARTIFACT SEQADV 2GCO PRO A -4 UNP P08134 CLONING ARTIFACT SEQADV 2GCO ARG A -3 UNP P08134 CLONING ARTIFACT SEQADV 2GCO GLY A -2 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER A -1 UNP P08134 CLONING ARTIFACT SEQADV 2GCO HIS A 0 UNP P08134 CLONING ARTIFACT SEQADV 2GCO CSX A 107 UNP P08134 CYS 107 MODIFIED RESIDUE SEQADV 2GCO MET B -19 UNP P08134 CLONING ARTIFACT SEQADV 2GCO GLY B -18 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER B -17 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER B -16 UNP P08134 CLONING ARTIFACT SEQADV 2GCO HIS B -15 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS B -14 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS B -13 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS B -12 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS B -11 UNP P08134 EXPRESSION TAG SEQADV 2GCO HIS B -10 UNP P08134 EXPRESSION TAG SEQADV 2GCO SER B -9 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER B -8 UNP P08134 CLONING ARTIFACT SEQADV 2GCO GLY B -7 UNP P08134 CLONING ARTIFACT SEQADV 2GCO LEU B -6 UNP P08134 CLONING ARTIFACT SEQADV 2GCO VAL B -5 UNP P08134 CLONING ARTIFACT SEQADV 2GCO PRO B -4 UNP P08134 CLONING ARTIFACT SEQADV 2GCO ARG B -3 UNP P08134 CLONING ARTIFACT SEQADV 2GCO GLY B -2 UNP P08134 CLONING ARTIFACT SEQADV 2GCO SER B -1 UNP P08134 CLONING ARTIFACT SEQADV 2GCO HIS B 0 UNP P08134 CLONING ARTIFACT SEQRES 1 A 201 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 201 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ILE ARG LYS SEQRES 3 A 201 LYS LEU VAL ILE VAL GLY ASP GLY ALA CYS GLY LYS THR SEQRES 4 A 201 CYS LEU LEU ILE VAL PHE SER LYS ASP GLN PHE PRO GLU SEQRES 5 A 201 VAL TYR VAL PRO THR VAL PHE GLU ASN TYR ILE ALA ASP SEQRES 6 A 201 ILE GLU VAL ASP GLY LYS GLN VAL GLU LEU ALA LEU TRP SEQRES 7 A 201 ASP THR ALA GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO SEQRES 8 A 201 LEU SER TYR PRO ASP THR ASP VAL ILE LEU MET CYS PHE SEQRES 9 A 201 SER ILE ASP SER PRO ASP SER LEU GLU ASN ILE PRO GLU SEQRES 10 A 201 LYS TRP THR PRO GLU VAL LYS HIS PHE CSX PRO ASN VAL SEQRES 11 A 201 PRO ILE ILE LEU VAL GLY ASN LYS LYS ASP LEU ARG GLN SEQRES 12 A 201 ASP GLU HIS THR ARG ARG GLU LEU ALA LYS MET LYS GLN SEQRES 13 A 201 GLU PRO VAL ARG SER GLU GLU GLY ARG ASP MET ALA ASN SEQRES 14 A 201 ARG ILE SER ALA PHE GLY TYR LEU GLU CYS SER ALA LYS SEQRES 15 A 201 THR LYS GLU GLY VAL ARG GLU VAL PHE GLU MET ALA THR SEQRES 16 A 201 ARG ALA GLY LEU GLN VAL SEQRES 1 B 201 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 201 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ILE ARG LYS SEQRES 3 B 201 LYS LEU VAL ILE VAL GLY ASP GLY ALA CYS GLY LYS THR SEQRES 4 B 201 CYS LEU LEU ILE VAL PHE SER LYS ASP GLN PHE PRO GLU SEQRES 5 B 201 VAL TYR VAL PRO THR VAL PHE GLU ASN TYR ILE ALA ASP SEQRES 6 B 201 ILE GLU VAL ASP GLY LYS GLN VAL GLU LEU ALA LEU TRP SEQRES 7 B 201 ASP THR ALA GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO SEQRES 8 B 201 LEU SER TYR PRO ASP THR ASP VAL ILE LEU MET CYS PHE SEQRES 9 B 201 SER ILE ASP SER PRO ASP SER LEU GLU ASN ILE PRO GLU SEQRES 10 B 201 LYS TRP THR PRO GLU VAL LYS HIS PHE CYS PRO ASN VAL SEQRES 11 B 201 PRO ILE ILE LEU VAL GLY ASN LYS LYS ASP LEU ARG GLN SEQRES 12 B 201 ASP GLU HIS THR ARG ARG GLU LEU ALA LYS MET LYS GLN SEQRES 13 B 201 GLU PRO VAL ARG SER GLU GLU GLY ARG ASP MET ALA ASN SEQRES 14 B 201 ARG ILE SER ALA PHE GLY TYR LEU GLU CYS SER ALA LYS SEQRES 15 B 201 THR LYS GLU GLY VAL ARG GLU VAL PHE GLU MET ALA THR SEQRES 16 B 201 ARG ALA GLY LEU GLN VAL MODRES 2GCO CSX A 107 CYS S-OXY CYSTEINE HET CSX A 107 7 HET MG A1002 1 HET GNP A1001 32 HET MG B1004 1 HET GNP B1003 32 HETNAM CSX S-OXY CYSTEINE HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 1 CSX C3 H7 N O3 S FORMUL 3 MG 2(MG 2+) FORMUL 4 GNP 2(C10 H17 N6 O13 P3) FORMUL 7 HOH *502(H2 O) HELIX 1 1 GLY A 17 ASP A 28 1 12 HELIX 2 2 GLN A 63 ASP A 67 5 5 HELIX 3 3 LEU A 69 TYR A 74 5 6 HELIX 4 4 SER A 88 LYS A 98 1 11 HELIX 5 5 LYS A 98 CSX A 107 1 10 HELIX 6 6 LYS A 118 ARG A 122 5 5 HELIX 7 7 ASP A 124 LYS A 133 1 10 HELIX 8 8 ARG A 140 ILE A 151 1 12 HELIX 9 9 GLY A 166 GLN A 180 1 15 HELIX 10 10 GLY B 17 ASP B 28 1 12 HELIX 11 11 GLN B 63 ASP B 67 5 5 HELIX 12 12 LEU B 69 TYR B 74 5 6 HELIX 13 13 SER B 88 LYS B 98 1 11 HELIX 14 14 LYS B 98 CYS B 107 1 10 HELIX 15 15 LYS B 118 ARG B 122 5 5 HELIX 16 16 ASP B 124 LYS B 133 1 10 HELIX 17 17 ARG B 140 ILE B 151 1 12 HELIX 18 18 GLY B 166 GLN B 180 1 15 SHEET 1 A 6 ILE A 43 VAL A 48 0 SHEET 2 A 6 LYS A 51 TRP A 58 -1 O LEU A 55 N ALA A 44 SHEET 3 A 6 ILE A 4 GLY A 12 1 N ILE A 4 O GLU A 54 SHEET 4 A 6 VAL A 79 SER A 85 1 O CYS A 83 N VAL A 11 SHEET 5 A 6 ILE A 112 ASN A 117 1 O ASN A 117 N PHE A 84 SHEET 6 A 6 GLY A 155 GLU A 158 1 O GLY A 155 N LEU A 114 SHEET 1 B 6 TYR B 42 VAL B 48 0 SHEET 2 B 6 LYS B 51 TRP B 58 -1 O LEU B 55 N ALA B 44 SHEET 3 B 6 ARG B 5 GLY B 12 1 N LYS B 6 O GLU B 54 SHEET 4 B 6 VAL B 79 SER B 85 1 O CYS B 83 N VAL B 11 SHEET 5 B 6 ILE B 112 ASN B 117 1 O ASN B 117 N PHE B 84 SHEET 6 B 6 GLY B 155 GLU B 158 1 O GLY B 155 N LEU B 114 LINK C PHE A 106 N CSX A 107 1555 1555 1.33 LINK C CSX A 107 N PRO A 108 1555 1555 1.34 LINK OG1 THR A 19 MG MG A1002 1555 1555 2.12 LINK O THR A 37 MG MG A1002 1555 1555 2.10 LINK O2G GNP A1001 MG MG A1002 1555 1555 1.96 LINK O2B GNP A1001 MG MG A1002 1555 1555 2.07 LINK MG MG A1002 O HOH A1049 1555 1555 2.10 LINK MG MG A1002 O HOH A1080 1555 1555 2.06 LINK OG1 THR B 19 MG MG B1004 1555 1555 2.08 LINK O THR B 37 MG MG B1004 1555 1555 2.16 LINK O2G GNP B1003 MG MG B1004 1555 1555 1.95 LINK O2B GNP B1003 MG MG B1004 1555 1555 2.03 LINK MG MG B1004 O HOH B1027 1555 1555 2.06 LINK MG MG B1004 O HOH B1059 1555 1555 2.04 SITE 1 AC1 5 THR A 19 THR A 37 GNP A1001 HOH A1049 SITE 2 AC1 5 HOH A1080 SITE 1 AC2 5 THR B 19 THR B 37 GNP B1003 HOH B1027 SITE 2 AC2 5 HOH B1059 SITE 1 AC3 29 GLY A 14 ALA A 15 CYS A 16 GLY A 17 SITE 2 AC3 29 LYS A 18 THR A 19 CYS A 20 PHE A 30 SITE 3 AC3 29 VAL A 35 THR A 37 GLY A 62 LYS A 118 SITE 4 AC3 29 ASP A 120 LEU A 121 SER A 160 ALA A 161 SITE 5 AC3 29 LYS A 162 MG A1002 HOH A1009 HOH A1019 SITE 6 AC3 29 HOH A1035 HOH A1049 HOH A1077 HOH A1080 SITE 7 AC3 29 HOH A1101 HOH A1218 HOH A1219 HOH A1226 SITE 8 AC3 29 HOH A1230 SITE 1 AC4 28 GLY B 14 ALA B 15 CYS B 16 GLY B 17 SITE 2 AC4 28 LYS B 18 THR B 19 CYS B 20 PHE B 30 SITE 3 AC4 28 THR B 37 GLY B 62 LYS B 118 ASP B 120 SITE 4 AC4 28 LEU B 121 SER B 160 ALA B 161 LYS B 162 SITE 5 AC4 28 MG B1004 HOH B1010 HOH B1012 HOH B1027 SITE 6 AC4 28 HOH B1053 HOH B1059 HOH B1060 HOH B1065 SITE 7 AC4 28 HOH B1124 HOH B1127 HOH B1132 HOH B1176 CRYST1 64.092 75.645 82.903 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012060 0.00000