HEADER SIGNALING PROTEIN 14-MAR-06 2GCP TITLE CRYSTAL STRUCTURE OF THE HUMAN RHOC-GSP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHOC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RHO CDNA CLONE 9, H9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARH9, ARHC, RHOC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS GTP-BINDING PROTEIN, GTPASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.G.DIAS,R.A.CERIONE REVDAT 5 30-AUG-23 2GCP 1 REMARK SEQADV LINK REVDAT 4 31-AUG-11 2GCP 1 SEQADV SOURCE VERSN REVDAT 3 24-FEB-09 2GCP 1 VERSN REVDAT 2 12-JUN-07 2GCP 1 JRNL REVDAT 1 27-MAR-07 2GCP 0 JRNL AUTH S.M.G.DIAS,R.A.CERIONE JRNL TITL X-RAY CRYSTAL STRUCTURES REVEAL TWO ACTIVATED STATES FOR JRNL TITL 2 RHOC. JRNL REF BIOCHEMISTRY V. 46 6547 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17497936 JRNL DOI 10.1021/BI700035P REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.800 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 967 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1517 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2062 ; 1.733 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 6.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;37.976 ;24.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;15.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.198 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1135 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 710 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1005 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.290 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 946 ; 1.183 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1476 ; 1.891 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 669 ; 2.957 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 581 ; 4.424 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9020 17.1530 15.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.0143 T22: 0.0206 REMARK 3 T33: -0.0502 T12: 0.0004 REMARK 3 T13: 0.0021 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.3336 L22: 0.0939 REMARK 3 L33: 0.2314 L12: -0.0469 REMARK 3 L13: -0.0383 L23: 0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0022 S13: 0.0005 REMARK 3 S21: -0.0018 S22: -0.0127 S23: -0.0007 REMARK 3 S31: -0.0018 S32: 0.0052 S33: -0.0009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 54.593 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : 0.58300 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Z2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M SODIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.04500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.71750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.71750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.56750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.71750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.71750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.52250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.71750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.71750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.56750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.71750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.71750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.52250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.04500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 28 NZ LYS A 164 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 8 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 38 -70.71 -95.16 REMARK 500 LYS A 164 -7.72 87.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 19 OG1 REMARK 620 2 THR A 37 OG1 86.6 REMARK 620 3 GSP A1001 O3G 176.2 91.5 REMARK 620 4 GSP A1001 O2B 88.3 172.7 93.2 REMARK 620 5 HOH A3025 O 90.6 93.3 92.8 92.0 REMARK 620 6 HOH A3036 O 82.3 90.7 94.5 83.4 171.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HOH A3089 O 70.6 REMARK 620 3 HOH A3090 O 118.5 140.2 REMARK 620 4 HOH A3091 O 90.9 105.7 112.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GCN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RHOC-GDP COMPLEX REMARK 900 RELATED ID: 2GCO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN RHOC-GPPNHP COMPLEX DBREF 2GCP A 1 181 UNP P08134 RHOC_HUMAN 1 181 SEQADV 2GCP MET A -19 UNP P08134 EXPRESSION TAG SEQADV 2GCP GLY A -18 UNP P08134 EXPRESSION TAG SEQADV 2GCP SER A -17 UNP P08134 EXPRESSION TAG SEQADV 2GCP SER A -16 UNP P08134 EXPRESSION TAG SEQADV 2GCP HIS A -15 UNP P08134 EXPRESSION TAG SEQADV 2GCP HIS A -14 UNP P08134 EXPRESSION TAG SEQADV 2GCP HIS A -13 UNP P08134 EXPRESSION TAG SEQADV 2GCP HIS A -12 UNP P08134 EXPRESSION TAG SEQADV 2GCP HIS A -11 UNP P08134 EXPRESSION TAG SEQADV 2GCP HIS A -10 UNP P08134 EXPRESSION TAG SEQADV 2GCP SER A -9 UNP P08134 EXPRESSION TAG SEQADV 2GCP SER A -8 UNP P08134 EXPRESSION TAG SEQADV 2GCP GLY A -7 UNP P08134 EXPRESSION TAG SEQADV 2GCP LEU A -6 UNP P08134 EXPRESSION TAG SEQADV 2GCP VAL A -5 UNP P08134 EXPRESSION TAG SEQADV 2GCP PRO A -4 UNP P08134 EXPRESSION TAG SEQADV 2GCP ARG A -3 UNP P08134 EXPRESSION TAG SEQADV 2GCP GLY A -2 UNP P08134 EXPRESSION TAG SEQADV 2GCP SER A -1 UNP P08134 EXPRESSION TAG SEQADV 2GCP HIS A 0 UNP P08134 EXPRESSION TAG SEQRES 1 A 201 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 201 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ILE ARG LYS SEQRES 3 A 201 LYS LEU VAL ILE VAL GLY ASP GLY ALA CYS GLY LYS THR SEQRES 4 A 201 CYS LEU LEU ILE VAL PHE SER LYS ASP GLN PHE PRO GLU SEQRES 5 A 201 VAL TYR VAL PRO THR VAL PHE GLU ASN TYR ILE ALA ASP SEQRES 6 A 201 ILE GLU VAL ASP GLY LYS GLN VAL GLU LEU ALA LEU TRP SEQRES 7 A 201 ASP THR ALA GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO SEQRES 8 A 201 LEU SER TYR PRO ASP THR ASP VAL ILE LEU MET CYS PHE SEQRES 9 A 201 SER ILE ASP SER PRO ASP SER LEU GLU ASN ILE PRO GLU SEQRES 10 A 201 LYS TRP THR PRO GLU VAL LYS HIS PHE CYS PRO ASN VAL SEQRES 11 A 201 PRO ILE ILE LEU VAL GLY ASN LYS LYS ASP LEU ARG GLN SEQRES 12 A 201 ASP GLU HIS THR ARG ARG GLU LEU ALA LYS MET LYS GLN SEQRES 13 A 201 GLU PRO VAL ARG SER GLU GLU GLY ARG ASP MET ALA ASN SEQRES 14 A 201 ARG ILE SER ALA PHE GLY TYR LEU GLU CYS SER ALA LYS SEQRES 15 A 201 THR LYS GLU GLY VAL ARG GLU VAL PHE GLU MET ALA THR SEQRES 16 A 201 ARG ALA GLY LEU GLN VAL HET MG A2001 1 HET MG A2002 1 HET MG A2003 1 HET GSP A1001 32 HET EDO A3001 4 HET EDO A3002 4 HETNAM MG MAGNESIUM ION HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 3(MG 2+) FORMUL 5 GSP C10 H16 N5 O13 P3 S FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *157(H2 O) HELIX 1 1 GLY A 17 ASP A 28 1 12 HELIX 2 2 GLN A 63 ASP A 67 5 5 HELIX 3 3 LEU A 69 TYR A 74 5 6 HELIX 4 4 SER A 88 LYS A 98 1 11 HELIX 5 5 LYS A 98 CYS A 107 1 10 HELIX 6 6 LYS A 118 ARG A 122 5 5 HELIX 7 7 ASP A 124 MET A 134 1 11 HELIX 8 8 ARG A 140 ILE A 151 1 12 HELIX 9 9 GLY A 166 LEU A 179 1 14 SHEET 1 A 6 PHE A 39 VAL A 48 0 SHEET 2 A 6 LYS A 51 THR A 60 -1 O LEU A 57 N TYR A 42 SHEET 3 A 6 ARG A 5 GLY A 12 1 N LEU A 8 O TRP A 58 SHEET 4 A 6 VAL A 79 SER A 85 1 O CYS A 83 N VAL A 11 SHEET 5 A 6 ILE A 112 ASN A 117 1 O ILE A 113 N ILE A 80 SHEET 6 A 6 GLY A 155 GLU A 158 1 O LEU A 157 N GLY A 116 LINK OG1 THR A 19 MG MG A2001 1555 1555 1.99 LINK OG1 THR A 37 MG MG A2001 1555 1555 2.12 LINK NE2 HIS A 105 MG MG A2002 1555 1555 2.99 LINK O3G GSP A1001 MG MG A2001 1555 1555 2.04 LINK O2B GSP A1001 MG MG A2001 1555 1555 2.22 LINK MG MG A2001 O HOH A3025 1555 1555 2.17 LINK MG MG A2001 O HOH A3036 1555 1555 2.09 LINK MG MG A2002 O HOH A3089 1555 1555 3.08 LINK MG MG A2002 O HOH A3090 1555 1555 2.99 LINK MG MG A2002 O HOH A3091 1555 1555 3.07 SITE 1 AC1 5 THR A 19 THR A 37 GSP A1001 HOH A3025 SITE 2 AC1 5 HOH A3036 SITE 1 AC2 5 HIS A 105 ARG A 122 HOH A3089 HOH A3090 SITE 2 AC2 5 HOH A3091 SITE 1 AC3 2 ARG A 145 TYR A 156 SITE 1 AC4 28 GLY A 14 ALA A 15 CYS A 16 GLY A 17 SITE 2 AC4 28 LYS A 18 THR A 19 CYS A 20 PHE A 30 SITE 3 AC4 28 TYR A 34 THR A 37 GLY A 62 LYS A 118 SITE 4 AC4 28 ASP A 120 PHE A 154 SER A 160 ALA A 161 SITE 5 AC4 28 LYS A 162 MG A2001 EDO A3002 HOH A3015 SITE 6 AC4 28 HOH A3022 HOH A3025 HOH A3036 HOH A3077 SITE 7 AC4 28 HOH A3099 HOH A3100 HOH A3103 HOH A3104 SITE 1 AC5 6 ASP A 13 GLY A 14 ASP A 49 SER A 88 SITE 2 AC5 6 ASP A 90 SER A 91 SITE 1 AC6 10 THR A 19 CYS A 20 VAL A 33 TYR A 34 SITE 2 AC6 10 VAL A 35 GSP A1001 HOH A3025 HOH A3083 SITE 3 AC6 10 HOH A3103 HOH A3124 CRYST1 59.435 59.435 138.090 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007240 0.00000