data_2GE2 # _entry.id 2GE2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GE2 pdb_00002ge2 10.2210/pdb2ge2/pdb RCSB RCSB037003 ? ? WWPDB D_1000037003 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-04 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GE2 _pdbx_database_status.recvd_initial_deposition_date 2006-03-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'de los Santos, C.' 1 'Zaliznyak, T.' 2 # _citation.id primary _citation.title ;Structure and Stability of Duplex DNA Containing the 3-(Deoxyguanosin-N(2)-yl)-2-acetylaminofluorene (dG(N(2))-AAF) Lesion: A Bulky Adduct that Persists in Cellular DNA. ; _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 19 _citation.page_first 745 _citation.page_last 752 _citation.year 2006 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16780352 _citation.pdbx_database_id_DOI 10.1021/tx060002i # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zaliznyak, T.' 1 ? primary 'Bonala, R.' 2 ? primary 'Johnson, F.' 3 ? primary 'de Los Santos, C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*GP*CP*AP*TP*GP*C)-3'" 3334.186 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'" 3374.210 1 ? ? ? ? 3 non-polymer syn 2-ACETYLAMINOFLUORENE-3-YL 223.270 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DA)(DT)(DG)(DC)' CGTACGCATGC A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DG)(DC)(DG)(DT)(DA)(DC)(DG)' GCATGCGTACG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-ACETYLAMINOFLUORENE-3-YL _pdbx_entity_nonpoly.comp_id AFF # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AFF 'DNA linking' . 2-ACETYLAMINOFLUORENE-3-YL ? 'C15 H13 N O' 223.270 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n B 2 1 DG 1 1 1 DG G B . n B 2 2 DC 2 2 2 DC C B . n B 2 3 DA 3 3 3 DA A B . n B 2 4 DT 4 4 4 DT T B . n B 2 5 DG 5 5 5 DG G B . n B 2 6 DC 6 6 6 DC C B . n B 2 7 DG 7 7 7 DG G B . n B 2 8 DT 8 8 8 DT T B . n B 2 9 DA 9 9 9 DA A B . n B 2 10 DC 10 10 10 DC C B . n B 2 11 DG 11 11 11 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id AFF _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 12 _pdbx_nonpoly_scheme.auth_seq_num 12 _pdbx_nonpoly_scheme.pdb_mon_id AFF _pdbx_nonpoly_scheme.auth_mon_id AFF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.entry_id 2GE2 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GE2 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2GE2 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 2GE2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2GE2 _struct.title 'Solution structure of the Duplex DNA Containing the 3-(Deoxyguanosin-N2-yl)-2-Acetoaminofluorene' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2GE2 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, acetylaminofluoren (AAF)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2GE2 2GE2 ? ? ? 2 2 PDB 2GE2 2GE2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GE2 A 1 ? 11 ? 2GE2 1 ? 11 ? 1 11 2 2 2GE2 B 1 ? 11 ? 2GE2 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 6 N2 ? ? ? 1_555 C AFF . C3 ? ? A DG 6 A AFF 12 1_555 ? ? ? ? ? ? ? 1.408 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 3 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 3 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 6 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 6 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 6 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 8 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 8 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 10 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 10 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 10 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AFF 12 ? 7 'BINDING SITE FOR RESIDUE AFF A 12' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DG A 6 ? DG A 6 . ? 1_555 ? 2 AC1 7 DC A 7 ? DC A 7 . ? 1_555 ? 3 AC1 7 DA A 8 ? DA A 8 . ? 1_555 ? 4 AC1 7 DG B 5 ? DG B 5 . ? 1_555 ? 5 AC1 7 DC B 6 ? DC B 6 . ? 1_555 ? 6 AC1 7 DG B 7 ? DG B 7 . ? 1_555 ? 7 AC1 7 DT B 8 ? DT B 8 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C5 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 9 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C7 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 9 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.533 _pdbx_validate_rmsd_bond.bond_target_value 1.496 _pdbx_validate_rmsd_bond.bond_deviation 0.037 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 127.58 119.70 7.88 1.20 Y 2 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.43 108.30 3.13 0.30 N 3 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 118.45 122.90 -4.45 0.60 N 4 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 113.01 108.30 4.71 0.30 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.64 108.30 5.34 0.30 N 6 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 127.66 119.70 7.96 1.20 Y 7 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 101.94 108.00 -6.06 0.70 N 8 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 108.41 105.40 3.01 0.40 N 9 1 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.87 108.30 3.57 0.30 N 10 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 127.61 119.70 7.91 1.20 Y 11 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.28 108.30 1.98 0.30 N 12 1 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DC 2 ? ? 127.11 119.70 7.41 1.20 Y 13 1 C6 B DT 4 ? ? C5 B DT 4 ? ? C7 B DT 4 ? ? 118.35 122.90 -4.55 0.60 N 14 1 "C3'" B DG 5 ? ? "O3'" B DG 5 ? ? P B DC 6 ? ? 128.80 119.70 9.10 1.20 Y 15 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 110.80 108.30 2.50 0.30 N 16 1 C6 B DT 8 ? ? C5 B DT 8 ? ? C7 B DT 8 ? ? 117.71 122.90 -5.19 0.60 N 17 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? "C2'" B DG 11 ? ? 100.29 105.90 -5.61 0.80 N 18 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.12 108.30 2.82 0.30 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER, COVALENT' # _pdbx_nmr_ensemble.entry_id 2GE2 _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2GE2 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.9mM duplex DNA, 3-(deoxyguanosin-N2-yl)-2acetylamino-fluorene, 25mM phosphate buffer, 0.5mM EDTA, 50mM NaCl, 100% D2O' '100% D2O' 2 '0.9mM duplex DNA, 3-(deoxyguanosin-N2-yl)-2acetylamino-fluorene, 25mM phosphate buffer, 0.5mM EDTA, 50mM NaCl, 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 1 6.8 '50mM NaCl' atm K 2 278 1 6.8 '50mM NaCl' atm K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 P-COSY 1 4 1 DQF-COSY 1 5 2 'noesyjrhs (H2O)' 2 # _pdbx_nmr_details.entry_id 2GE2 _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 2GE2 _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ;total of 582 NOE-derived inter-proton distances were restrained, 72 dihedral angle restraints, 29 distance restraints from hydrogen bonds ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing Felix ? ? 1 refinement X-PLOR 3.85 'Brunger et al.' 2 'structure solution' X-PLOR 3.85 'Brunger et al.' 3 collection VNMR 5.2 ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AFF C1 C Y N 1 AFF C2 C Y N 2 AFF N2 N N N 3 AFF C3 C Y N 4 AFF C4 C Y N 5 AFF C5 C Y N 6 AFF C6 C Y N 7 AFF C7 C Y N 8 AFF C8 C Y N 9 AFF C9 C N N 10 AFF C10 C Y N 11 AFF C11 C Y N 12 AFF C12 C Y N 13 AFF C13 C Y N 14 AFF C40 C N N 15 AFF O40 O N N 16 AFF C31 C N N 17 AFF H1 H N N 18 AFF HN2 H N N 19 AFF H3 H N N 20 AFF H4 H N N 21 AFF H5 H N N 22 AFF H6 H N N 23 AFF H7 H N N 24 AFF H8 H N N 25 AFF HD H N N 26 AFF HU H N N 27 AFF H33 H N N 28 AFF H31 H N N 29 AFF H32 H N N 30 DA OP3 O N N 31 DA P P N N 32 DA OP1 O N N 33 DA OP2 O N N 34 DA "O5'" O N N 35 DA "C5'" C N N 36 DA "C4'" C N R 37 DA "O4'" O N N 38 DA "C3'" C N S 39 DA "O3'" O N N 40 DA "C2'" C N N 41 DA "C1'" C N R 42 DA N9 N Y N 43 DA C8 C Y N 44 DA N7 N Y N 45 DA C5 C Y N 46 DA C6 C Y N 47 DA N6 N N N 48 DA N1 N Y N 49 DA C2 C Y N 50 DA N3 N Y N 51 DA C4 C Y N 52 DA HOP3 H N N 53 DA HOP2 H N N 54 DA "H5'" H N N 55 DA "H5''" H N N 56 DA "H4'" H N N 57 DA "H3'" H N N 58 DA "HO3'" H N N 59 DA "H2'" H N N 60 DA "H2''" H N N 61 DA "H1'" H N N 62 DA H8 H N N 63 DA H61 H N N 64 DA H62 H N N 65 DA H2 H N N 66 DC OP3 O N N 67 DC P P N N 68 DC OP1 O N N 69 DC OP2 O N N 70 DC "O5'" O N N 71 DC "C5'" C N N 72 DC "C4'" C N R 73 DC "O4'" O N N 74 DC "C3'" C N S 75 DC "O3'" O N N 76 DC "C2'" C N N 77 DC "C1'" C N R 78 DC N1 N N N 79 DC C2 C N N 80 DC O2 O N N 81 DC N3 N N N 82 DC C4 C N N 83 DC N4 N N N 84 DC C5 C N N 85 DC C6 C N N 86 DC HOP3 H N N 87 DC HOP2 H N N 88 DC "H5'" H N N 89 DC "H5''" H N N 90 DC "H4'" H N N 91 DC "H3'" H N N 92 DC "HO3'" H N N 93 DC "H2'" H N N 94 DC "H2''" H N N 95 DC "H1'" H N N 96 DC H41 H N N 97 DC H42 H N N 98 DC H5 H N N 99 DC H6 H N N 100 DG OP3 O N N 101 DG P P N N 102 DG OP1 O N N 103 DG OP2 O N N 104 DG "O5'" O N N 105 DG "C5'" C N N 106 DG "C4'" C N R 107 DG "O4'" O N N 108 DG "C3'" C N S 109 DG "O3'" O N N 110 DG "C2'" C N N 111 DG "C1'" C N R 112 DG N9 N Y N 113 DG C8 C Y N 114 DG N7 N Y N 115 DG C5 C Y N 116 DG C6 C N N 117 DG O6 O N N 118 DG N1 N N N 119 DG C2 C N N 120 DG N2 N N N 121 DG N3 N N N 122 DG C4 C Y N 123 DG HOP3 H N N 124 DG HOP2 H N N 125 DG "H5'" H N N 126 DG "H5''" H N N 127 DG "H4'" H N N 128 DG "H3'" H N N 129 DG "HO3'" H N N 130 DG "H2'" H N N 131 DG "H2''" H N N 132 DG "H1'" H N N 133 DG H8 H N N 134 DG H1 H N N 135 DG H21 H N N 136 DG H22 H N N 137 DT OP3 O N N 138 DT P P N N 139 DT OP1 O N N 140 DT OP2 O N N 141 DT "O5'" O N N 142 DT "C5'" C N N 143 DT "C4'" C N R 144 DT "O4'" O N N 145 DT "C3'" C N S 146 DT "O3'" O N N 147 DT "C2'" C N N 148 DT "C1'" C N R 149 DT N1 N N N 150 DT C2 C N N 151 DT O2 O N N 152 DT N3 N N N 153 DT C4 C N N 154 DT O4 O N N 155 DT C5 C N N 156 DT C7 C N N 157 DT C6 C N N 158 DT HOP3 H N N 159 DT HOP2 H N N 160 DT "H5'" H N N 161 DT "H5''" H N N 162 DT "H4'" H N N 163 DT "H3'" H N N 164 DT "HO3'" H N N 165 DT "H2'" H N N 166 DT "H2''" H N N 167 DT "H1'" H N N 168 DT H3 H N N 169 DT H71 H N N 170 DT H72 H N N 171 DT H73 H N N 172 DT H6 H N N 173 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AFF C1 C2 sing Y N 1 AFF C1 C10 doub Y N 2 AFF C1 H1 sing N N 3 AFF C2 N2 sing N N 4 AFF C2 C3 doub Y N 5 AFF N2 C40 sing N N 6 AFF N2 HN2 sing N N 7 AFF C3 C4 sing Y N 8 AFF C3 H3 sing N N 9 AFF C4 C11 doub Y N 10 AFF C4 H4 sing N N 11 AFF C5 C6 sing Y N 12 AFF C5 C12 doub Y N 13 AFF C5 H5 sing N N 14 AFF C6 C7 doub Y N 15 AFF C6 H6 sing N N 16 AFF C7 C8 sing Y N 17 AFF C7 H7 sing N N 18 AFF C8 C13 doub Y N 19 AFF C8 H8 sing N N 20 AFF C9 C10 sing N N 21 AFF C9 C13 sing N N 22 AFF C9 HD sing N N 23 AFF C9 HU sing N N 24 AFF C10 C11 sing Y N 25 AFF C11 C12 sing Y N 26 AFF C12 C13 sing Y N 27 AFF C40 O40 doub N N 28 AFF C40 C31 sing N N 29 AFF C31 H33 sing N N 30 AFF C31 H31 sing N N 31 AFF C31 H32 sing N N 32 DA OP3 P sing N N 33 DA OP3 HOP3 sing N N 34 DA P OP1 doub N N 35 DA P OP2 sing N N 36 DA P "O5'" sing N N 37 DA OP2 HOP2 sing N N 38 DA "O5'" "C5'" sing N N 39 DA "C5'" "C4'" sing N N 40 DA "C5'" "H5'" sing N N 41 DA "C5'" "H5''" sing N N 42 DA "C4'" "O4'" sing N N 43 DA "C4'" "C3'" sing N N 44 DA "C4'" "H4'" sing N N 45 DA "O4'" "C1'" sing N N 46 DA "C3'" "O3'" sing N N 47 DA "C3'" "C2'" sing N N 48 DA "C3'" "H3'" sing N N 49 DA "O3'" "HO3'" sing N N 50 DA "C2'" "C1'" sing N N 51 DA "C2'" "H2'" sing N N 52 DA "C2'" "H2''" sing N N 53 DA "C1'" N9 sing N N 54 DA "C1'" "H1'" sing N N 55 DA N9 C8 sing Y N 56 DA N9 C4 sing Y N 57 DA C8 N7 doub Y N 58 DA C8 H8 sing N N 59 DA N7 C5 sing Y N 60 DA C5 C6 sing Y N 61 DA C5 C4 doub Y N 62 DA C6 N6 sing N N 63 DA C6 N1 doub Y N 64 DA N6 H61 sing N N 65 DA N6 H62 sing N N 66 DA N1 C2 sing Y N 67 DA C2 N3 doub Y N 68 DA C2 H2 sing N N 69 DA N3 C4 sing Y N 70 DC OP3 P sing N N 71 DC OP3 HOP3 sing N N 72 DC P OP1 doub N N 73 DC P OP2 sing N N 74 DC P "O5'" sing N N 75 DC OP2 HOP2 sing N N 76 DC "O5'" "C5'" sing N N 77 DC "C5'" "C4'" sing N N 78 DC "C5'" "H5'" sing N N 79 DC "C5'" "H5''" sing N N 80 DC "C4'" "O4'" sing N N 81 DC "C4'" "C3'" sing N N 82 DC "C4'" "H4'" sing N N 83 DC "O4'" "C1'" sing N N 84 DC "C3'" "O3'" sing N N 85 DC "C3'" "C2'" sing N N 86 DC "C3'" "H3'" sing N N 87 DC "O3'" "HO3'" sing N N 88 DC "C2'" "C1'" sing N N 89 DC "C2'" "H2'" sing N N 90 DC "C2'" "H2''" sing N N 91 DC "C1'" N1 sing N N 92 DC "C1'" "H1'" sing N N 93 DC N1 C2 sing N N 94 DC N1 C6 sing N N 95 DC C2 O2 doub N N 96 DC C2 N3 sing N N 97 DC N3 C4 doub N N 98 DC C4 N4 sing N N 99 DC C4 C5 sing N N 100 DC N4 H41 sing N N 101 DC N4 H42 sing N N 102 DC C5 C6 doub N N 103 DC C5 H5 sing N N 104 DC C6 H6 sing N N 105 DG OP3 P sing N N 106 DG OP3 HOP3 sing N N 107 DG P OP1 doub N N 108 DG P OP2 sing N N 109 DG P "O5'" sing N N 110 DG OP2 HOP2 sing N N 111 DG "O5'" "C5'" sing N N 112 DG "C5'" "C4'" sing N N 113 DG "C5'" "H5'" sing N N 114 DG "C5'" "H5''" sing N N 115 DG "C4'" "O4'" sing N N 116 DG "C4'" "C3'" sing N N 117 DG "C4'" "H4'" sing N N 118 DG "O4'" "C1'" sing N N 119 DG "C3'" "O3'" sing N N 120 DG "C3'" "C2'" sing N N 121 DG "C3'" "H3'" sing N N 122 DG "O3'" "HO3'" sing N N 123 DG "C2'" "C1'" sing N N 124 DG "C2'" "H2'" sing N N 125 DG "C2'" "H2''" sing N N 126 DG "C1'" N9 sing N N 127 DG "C1'" "H1'" sing N N 128 DG N9 C8 sing Y N 129 DG N9 C4 sing Y N 130 DG C8 N7 doub Y N 131 DG C8 H8 sing N N 132 DG N7 C5 sing Y N 133 DG C5 C6 sing N N 134 DG C5 C4 doub Y N 135 DG C6 O6 doub N N 136 DG C6 N1 sing N N 137 DG N1 C2 sing N N 138 DG N1 H1 sing N N 139 DG C2 N2 sing N N 140 DG C2 N3 doub N N 141 DG N2 H21 sing N N 142 DG N2 H22 sing N N 143 DG N3 C4 sing N N 144 DT OP3 P sing N N 145 DT OP3 HOP3 sing N N 146 DT P OP1 doub N N 147 DT P OP2 sing N N 148 DT P "O5'" sing N N 149 DT OP2 HOP2 sing N N 150 DT "O5'" "C5'" sing N N 151 DT "C5'" "C4'" sing N N 152 DT "C5'" "H5'" sing N N 153 DT "C5'" "H5''" sing N N 154 DT "C4'" "O4'" sing N N 155 DT "C4'" "C3'" sing N N 156 DT "C4'" "H4'" sing N N 157 DT "O4'" "C1'" sing N N 158 DT "C3'" "O3'" sing N N 159 DT "C3'" "C2'" sing N N 160 DT "C3'" "H3'" sing N N 161 DT "O3'" "HO3'" sing N N 162 DT "C2'" "C1'" sing N N 163 DT "C2'" "H2'" sing N N 164 DT "C2'" "H2''" sing N N 165 DT "C1'" N1 sing N N 166 DT "C1'" "H1'" sing N N 167 DT N1 C2 sing N N 168 DT N1 C6 sing N N 169 DT C2 O2 doub N N 170 DT C2 N3 sing N N 171 DT N3 C4 sing N N 172 DT N3 H3 sing N N 173 DT C4 O4 doub N N 174 DT C4 C5 sing N N 175 DT C5 C7 sing N N 176 DT C5 C6 doub N N 177 DT C7 H71 sing N N 178 DT C7 H72 sing N N 179 DT C7 H73 sing N N 180 DT C6 H6 sing N N 181 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2GE2 'double helix' 2GE2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.689 -0.224 0.062 -2.980 -0.434 -1.011 1 A_DC1:DG11_B A 1 ? B 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.751 -0.247 0.300 0.712 -9.946 0.536 2 A_DG2:DC10_B A 2 ? B 10 ? 19 1 1 A DT 3 1_555 B DA 9 1_555 0.039 -0.186 0.427 -1.956 -21.794 -9.053 3 A_DT3:DA9_B A 3 ? B 9 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 0.420 -0.111 0.050 -3.799 -23.642 -12.392 4 A_DA4:DT8_B A 4 ? B 8 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.720 -0.254 0.187 5.846 -8.151 -1.090 5 A_DC5:DG7_B A 5 ? B 7 ? 19 1 1 A DG 6 1_555 B DC 6 1_555 -0.184 -0.143 -0.014 -3.189 -17.878 4.402 6 A_DG6:DC6_B A 6 ? B 6 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 -0.101 -0.108 0.759 -12.890 -16.640 -5.969 7 A_DC7:DG5_B A 7 ? B 5 ? 19 1 1 A DA 8 1_555 B DT 4 1_555 0.050 -0.179 -0.199 -8.148 -33.700 -6.340 8 A_DA8:DT4_B A 8 ? B 4 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 -0.352 -0.048 -0.006 -25.227 -18.048 -4.169 9 A_DT9:DA3_B A 9 ? B 3 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.577 -0.252 0.017 -7.721 -10.835 -3.386 10 A_DG10:DC2_B A 10 ? B 2 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.735 -0.248 -0.006 3.129 -3.095 -2.010 11 A_DC11:DG1_B A 11 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.701 1.430 3.493 -5.762 28.522 6.213 -5.637 -3.068 1.972 76.657 15.486 29.740 1 AA_DC1DG2:DC10DG11_BB A 1 ? B 11 ? A 2 ? B 10 ? 1 A DG 2 1_555 B DC 10 1_555 A DT 3 1_555 B DA 9 1_555 -0.874 -0.716 3.190 -2.982 0.264 35.958 -1.193 0.996 3.245 0.427 4.820 36.078 2 AA_DG2DT3:DA9DC10_BB A 2 ? B 10 ? A 3 ? B 9 ? 1 A DT 3 1_555 B DA 9 1_555 A DA 4 1_555 B DT 8 1_555 -0.185 -1.131 3.171 6.555 14.946 31.048 -3.894 1.190 2.319 25.807 -11.319 34.983 3 AA_DT3DA4:DT8DA9_BB A 3 ? B 9 ? A 4 ? B 8 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 1.872 -0.539 2.894 2.373 -3.557 32.748 -0.398 -2.926 3.059 -6.275 -4.186 33.018 4 AA_DA4DC5:DG7DT8_BB A 4 ? B 8 ? A 5 ? B 7 ? 1 A DC 5 1_555 B DG 7 1_555 A DG 6 1_555 B DC 6 1_555 -0.566 -0.877 3.277 3.431 6.443 32.791 -2.541 1.525 2.983 11.240 -5.985 33.572 5 AA_DC5DG6:DC6DG7_BB A 5 ? B 7 ? A 6 ? B 6 ? 1 A DG 6 1_555 B DC 6 1_555 A DC 7 1_555 B DG 5 1_555 -0.645 1.392 3.535 -5.706 -16.997 40.838 3.442 0.315 2.830 -23.066 7.743 44.446 6 AA_DG6DC7:DG5DC6_BB A 6 ? B 6 ? A 7 ? B 5 ? 1 A DC 7 1_555 B DG 5 1_555 A DA 8 1_555 B DT 4 1_555 0.758 0.409 3.201 9.721 3.252 39.010 0.221 0.013 3.311 4.770 -14.260 40.284 7 AA_DC7DA8:DT4DG5_BB A 7 ? B 5 ? A 8 ? B 4 ? 1 A DA 8 1_555 B DT 4 1_555 A DT 9 1_555 B DA 3 1_555 -0.099 0.114 3.587 -0.663 7.319 35.544 -0.946 0.057 3.541 11.833 1.073 36.272 8 AA_DA8DT9:DA3DT4_BB A 8 ? B 4 ? A 9 ? B 3 ? 1 A DT 9 1_555 B DA 3 1_555 A DG 10 1_555 B DC 2 1_555 1.452 1.234 3.011 4.567 15.461 30.116 -0.468 -1.717 3.407 27.425 -8.101 34.071 9 AA_DT9DG10:DC2DA3_BB A 9 ? B 3 ? A 10 ? B 2 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 0.574 0.588 3.007 -0.030 -8.417 42.950 1.516 -0.774 2.847 -11.365 0.040 43.729 10 AA_DG10DC11:DG1DC2_BB A 10 ? B 2 ? A 11 ? B 1 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 2GE2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_