HEADER HYDROLASE/DNA 17-MAR-06 2GE5 TITLE ECORV RESTRICTION ENDONUCLEASE C-TERMINAL DELETION MUTANT/GATATC/CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TYPE II RESTRICTION ENZYME ECORV; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: RESIDUES 1-219; COMPND 9 SYNONYM: ENDONUCLEASE ECORV, R.ECORV; COMPND 10 EC: 3.1.21.4; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 562; SOURCE 6 GENE: ECORVR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: MM294; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PBSRV KEYWDS PROTEIN-DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.A.HILLER,J.J.PERONA REVDAT 4 30-AUG-23 2GE5 1 REMARK LINK REVDAT 3 24-FEB-09 2GE5 1 VERSN REVDAT 2 17-OCT-06 2GE5 1 JRNL REVDAT 1 04-JUL-06 2GE5 0 JRNL AUTH D.A.HILLER,J.J.PERONA JRNL TITL POSITIVELY CHARGED C-TERMINAL SUBDOMAINS OF ECORV JRNL TITL 2 ENDONUCLEASE: CONTRIBUTIONS TO DNA BINDING, BENDING, AND JRNL TITL 3 CLEAVAGE. JRNL REF BIOCHEMISTRY V. 45 11453 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16981705 JRNL DOI 10.1021/BI0606400 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.K.WINKLER,D.W.BANNER,C.OEFNER,D.TSERNOGLOU,R.S.BROWN, REMARK 1 AUTH 2 S.P.HEATHMAN,R.K.BRYAN,P.D.MARTIN,K.PETRATOS,K.S.WILSON REMARK 1 TITL THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS REMARK 1 TITL 2 COMPLEXES WITH COGNATE AND NON-COGNATE DNA FRAGMENTS REMARK 1 REF EMBO J. V. 12 1781 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.C.HORTON,J.J.PERONA REMARK 1 TITL CRYSTALLOGRAPHIC SNAPSHOTS ALONG A PROTEIN-INDUCED REMARK 1 TITL 2 DNA-BENDING PATHWAY REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 97 5729 2000 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 64.1 REMARK 3 NUMBER OF REFLECTIONS : 15998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2692 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 102 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 7 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3475 REMARK 3 NUCLEIC ACID ATOMS : 446 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.23100 REMARK 3 B22 (A**2) : -9.23100 REMARK 3 B33 (A**2) : 18.46200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.230 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 38.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 297 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16007 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.677 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : 0.46700 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1EOP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 MM NACL, 8-12% PEG 4K, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.94600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.55050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.55050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 194.91900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.55050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.55050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.97300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.55050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.55050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 194.91900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.55050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.55050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.97300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 129.94600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 15 CG OD1 ND2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 SER A 146 OG REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 SER B 35 OG REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 ASN B 100 CG OD1 ND2 REMARK 470 THR B 143 OG1 CG2 REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 SER B 146 OG REMARK 470 SER B 147 OG REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 ASN B 154 CG OD1 ND2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 14 -135.24 46.98 REMARK 500 GLN A 16 -93.90 63.12 REMARK 500 ASP A 19 69.39 -168.62 REMARK 500 PRO A 32 -177.20 -63.39 REMARK 500 HIS A 59 44.79 -106.35 REMARK 500 PRO A 73 -159.79 -100.85 REMARK 500 PRO A 83 19.12 -69.17 REMARK 500 LYS A 85 78.17 -108.83 REMARK 500 LYS A 98 -168.36 -110.93 REMARK 500 ASN A 100 66.90 35.70 REMARK 500 SER A 112 -124.61 -100.30 REMARK 500 ASN A 117 -32.87 -30.55 REMARK 500 LEU A 148 41.04 -105.12 REMARK 500 ASN A 154 22.71 -75.95 REMARK 500 GLU A 155 16.26 -147.62 REMARK 500 LYS A 164 -102.47 -139.99 REMARK 500 THR A 187 62.76 23.12 REMARK 500 GLU B 82 49.76 -145.78 REMARK 500 LYS B 98 -156.22 -126.88 REMARK 500 GLU B 99 -119.31 -84.73 REMARK 500 ASN B 100 82.63 -60.01 REMARK 500 SER B 112 -130.25 -114.34 REMARK 500 PHE B 113 -19.50 -41.52 REMARK 500 ASN B 117 -32.94 -36.82 REMARK 500 VAL B 141 -155.57 -122.80 REMARK 500 ARG B 144 -81.39 58.59 REMARK 500 SER B 146 -51.87 -179.85 REMARK 500 GLU B 155 21.88 -143.06 REMARK 500 LYS B 164 -69.18 -124.51 REMARK 500 THR B 187 54.52 27.67 REMARK 500 LYS B 203 53.92 -91.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 6 0.14 SIDE CHAIN REMARK 500 DT D 6 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 283 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA C 7 O5' REMARK 620 2 DA C 7 OP1 51.1 REMARK 620 3 ASP A 74 OD2 162.4 111.7 REMARK 620 4 ASP A 74 OD1 132.8 106.6 41.4 REMARK 620 5 ASP A 90 OD1 111.8 61.3 52.2 71.9 REMARK 620 6 ASP A 90 OD2 94.2 61.6 77.5 110.7 41.1 REMARK 620 7 HOH A 290 O 98.8 144.5 95.7 79.0 147.3 150.4 REMARK 620 8 HOH A 292 O 85.2 61.9 82.1 50.4 70.4 105.4 102.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 283 DBREF 2GE5 A 2 220 UNP P04390 T2E5_ECOLI 1 219 DBREF 2GE5 B 2 220 UNP P04390 T2E5_ECOLI 1 219 DBREF 2GE5 C 1 11 PDB 2GE5 2GE5 1 11 DBREF 2GE5 D 1 11 PDB 2GE5 2GE5 1 11 SEQRES 1 C 11 DA DA DA DG DA DT DA DT DC DT DT SEQRES 1 D 11 DA DA DA DG DA DT DA DT DC DT DT SEQRES 1 A 219 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 A 219 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 A 219 GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL LEU SEQRES 4 A 219 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 A 219 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 A 219 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 A 219 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 A 219 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 A 219 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 A 219 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 A 219 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 A 219 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 A 219 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 A 219 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 A 219 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 A 219 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 A 219 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU SEQRES 1 B 219 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 B 219 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 B 219 GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL LEU SEQRES 4 B 219 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 B 219 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 B 219 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 B 219 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 B 219 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 B 219 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 B 219 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 B 219 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 B 219 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 B 219 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 B 219 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 B 219 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 B 219 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 B 219 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU HET CA A 283 1 HETNAM CA CALCIUM ION FORMUL 5 CA CA 2+ FORMUL 6 HOH *45(H2 O) HELIX 1 1 SER A 2 ASP A 13 1 12 HELIX 2 2 ASP A 36 HIS A 59 1 24 HELIX 3 3 PRO A 124 ASP A 126 5 3 HELIX 4 4 ARG A 144 LYS A 149 5 6 HELIX 5 5 ASN A 154 ILE A 159 5 6 HELIX 6 6 HIS A 195 GLY A 202 1 8 HELIX 7 7 SER A 208 ARG A 217 1 10 HELIX 8 8 SER B 2 LYS B 17 1 16 HELIX 9 9 ASP B 36 HIS B 59 1 24 HELIX 10 10 PRO B 124 ASP B 126 5 3 HELIX 11 11 ASN B 154 ILE B 159 5 6 HELIX 12 12 LYS B 173 ILE B 176 1 4 HELIX 13 13 HIS B 195 GLU B 201 1 7 HELIX 14 14 SER B 208 ASN B 218 1 11 SHEET 1 A 6 TYR A 151 ASN A 152 0 SHEET 2 A 6 LYS A 29 TYR A 31 -1 N ILE A 30 O TYR A 151 SHEET 3 A 6 VAL A 20 SER A 25 -1 N SER A 25 O LYS A 29 SHEET 4 A 6 VAL B 20 SER B 25 -1 O ILE B 24 N GLY A 22 SHEET 5 A 6 LYS B 29 PRO B 32 -1 O LYS B 29 N SER B 25 SHEET 6 A 6 TYR B 151 ASN B 152 -1 O TYR B 151 N ILE B 30 SHEET 1 B 5 ILE A 62 GLU A 64 0 SHEET 2 B 5 PHE A 75 LYS A 79 -1 O TYR A 78 N ILE A 62 SHEET 3 B 5 GLU A 82 THR A 96 -1 O ILE A 87 N LEU A 77 SHEET 4 B 5 TYR A 128 THR A 139 1 O TRP A 132 N ALA A 88 SHEET 5 B 5 LYS A 167 ASP A 172 -1 O GLN A 171 N ILE A 133 SHEET 1 C 3 THR A 106 GLY A 109 0 SHEET 2 C 3 ASN A 188 SER A 191 -1 O ILE A 189 N GLY A 108 SHEET 3 C 3 ALA A 177 ALA A 181 -1 N GLY A 178 O GLY A 190 SHEET 1 D 5 ILE B 62 GLU B 64 0 SHEET 2 D 5 PHE B 75 TYR B 78 -1 O TYR B 78 N ILE B 62 SHEET 3 D 5 LYS B 86 THR B 96 -1 O ILE B 87 N LEU B 77 SHEET 4 D 5 TYR B 128 THR B 139 1 O TRP B 132 N ALA B 88 SHEET 5 D 5 LYS B 167 ASP B 172 -1 O GLN B 171 N ILE B 133 SHEET 1 E 3 THR B 106 GLY B 109 0 SHEET 2 E 3 ASN B 188 SER B 191 -1 O ILE B 189 N GLY B 108 SHEET 3 E 3 ALA B 177 ALA B 181 -1 N GLY B 178 O GLY B 190 LINK O5' DA C 7 CA CA A 283 1555 1555 2.82 LINK OP1 DA C 7 CA CA A 283 1555 1555 2.98 LINK OD2 ASP A 74 CA CA A 283 1555 1555 2.97 LINK OD1 ASP A 74 CA CA A 283 1555 1555 3.21 LINK OD1 ASP A 90 CA CA A 283 1555 1555 3.26 LINK OD2 ASP A 90 CA CA A 283 1555 1555 2.94 LINK CA CA A 283 O HOH A 290 1555 1555 3.20 LINK CA CA A 283 O HOH A 292 1555 1555 3.00 CISPEP 1 TYR A 72 PRO A 73 0 -0.80 CISPEP 2 TYR B 72 PRO B 73 0 1.39 SITE 1 AC1 4 ASP A 74 ASP A 90 HOH A 292 DA C 7 CRYST1 67.101 67.101 259.892 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003848 0.00000