HEADER HYDROLASE 23-MAR-06 2GG7 TITLE NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP, PEPTIDASE M; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: MAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS METHIONINE AMINO PEPTIDASE, PITA-BREAD FOLD, MAP INHIBITOR, KEYWDS 2 ANTIBACTERIAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.G.EVDOKIMOV,M.E.POKROSS,R.L.WALTER,M.MEKEL REVDAT 4 30-AUG-23 2GG7 1 REMARK LINK REVDAT 3 24-FEB-09 2GG7 1 VERSN REVDAT 2 24-APR-07 2GG7 1 JRNL REVDAT 1 13-JUN-06 2GG7 0 JRNL AUTH A.G.EVDOKIMOV,M.POKROSS,R.L.WALTER,M.MEKEL,B.L.BARNETT, JRNL AUTH 2 J.AMBURGEY,W.L.SEIBEL,S.J.SOPER,J.F.DJUNG,N.FAIRWEATHER, JRNL AUTH 3 C.DIVEN,V.RASTOGI,L.GRINIUS,C.KLANKE,R.SIEHNEL,T.TWINEM, JRNL AUTH 4 R.ANDREWS,A.CURNOW JRNL TITL SERENDIPITOUS DISCOVERY OF NOVEL BACTERIAL METHIONINE JRNL TITL 2 AMINOPEPTIDASE INHIBITORS. JRNL REF PROTEINS V. 66 538 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17120228 JRNL DOI 10.1002/PROT.21207 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 91867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 330 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2308 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2141 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3160 ; 1.640 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5033 ; 0.727 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 6.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;35.559 ;24.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;11.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2631 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 453 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 442 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2303 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1138 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1248 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 356 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.164 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.372 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 69 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1406 ; 1.585 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 573 ; 1.053 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2324 ; 2.270 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 917 ; 3.001 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 812 ; 4.354 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4530 ; 1.483 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 511 ; 9.599 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4383 ; 5.375 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91914 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 23.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.02100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2GG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 25% PEG 8000, 100 MM REMARK 280 TRIS-HCL, 1-5 MM INHIBITOR, PH 7.0, BATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.47250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 860 O HOH A 1096 2.08 REMARK 500 O HOH A 851 O HOH A 1206 2.13 REMARK 500 O HOH A 1055 O HOH A 1163 2.19 REMARK 500 NZ LYS A 196 O HOH A 1207 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1089 O HOH A 1193 2656 1.83 REMARK 500 OE2 GLU A 160 O HOH A 1158 2646 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 74 -116.23 60.17 REMARK 500 ASN A 192 83.39 -151.12 REMARK 500 GLU A 204 62.71 -159.87 REMARK 500 GLU A 204 58.58 -157.74 REMARK 500 TRP A 221 -50.94 -128.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 74 O REMARK 620 2 VAL A 76 O 97.8 REMARK 620 3 SER A 231 O 94.5 129.2 REMARK 620 4 HOH A 793 O 138.9 107.5 93.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 302 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 ASP A 97 OD2 56.3 REMARK 620 3 ASP A 108 OD1 107.3 162.7 REMARK 620 4 GLU A 235 OE1 114.6 89.7 93.3 REMARK 620 5 GLU A 235 OE1 93.2 85.7 90.3 23.8 REMARK 620 6 GLU A 235 OE2 144.0 94.7 98.0 37.1 60.9 REMARK 620 7 U14 A 701 N3 107.8 85.8 106.2 124.9 147.4 88.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 HIS A 171 NE2 89.3 REMARK 620 3 GLU A 204 OE2 153.0 85.7 REMARK 620 4 GLU A 204 OE2 132.4 94.5 22.7 REMARK 620 5 GLU A 235 OE2 78.0 128.1 84.4 62.7 REMARK 620 6 GLU A 235 OE2 94.4 168.9 86.3 75.3 43.2 REMARK 620 7 U14 A 701 N2 97.6 109.0 109.1 125.2 122.4 81.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U14 A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GG0 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG2 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG3 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG5 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG8 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG9 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GGB RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GGC RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS DBREF 2GG7 A 2 264 UNP P0AE18 AMPM_ECOLI 2 264 SEQRES 1 A 263 ALA ILE SER ILE LYS THR PRO GLU ASP ILE GLU LYS MET SEQRES 2 A 263 ARG VAL ALA GLY ARG LEU ALA ALA GLU VAL LEU GLU MET SEQRES 3 A 263 ILE GLU PRO TYR VAL LYS PRO GLY VAL SER THR GLY GLU SEQRES 4 A 263 LEU ASP ARG ILE CYS ASN ASP TYR ILE VAL ASN GLU GLN SEQRES 5 A 263 HIS ALA VAL SER ALA CYS LEU GLY TYR HIS GLY TYR PRO SEQRES 6 A 263 LYS SER VAL CYS ILE SER ILE ASN GLU VAL VAL CYS HIS SEQRES 7 A 263 GLY ILE PRO ASP ASP ALA LYS LEU LEU LYS ASP GLY ASP SEQRES 8 A 263 ILE VAL ASN ILE ASP VAL THR VAL ILE LYS ASP GLY PHE SEQRES 9 A 263 HIS GLY ASP THR SER LYS MET PHE ILE VAL GLY LYS PRO SEQRES 10 A 263 THR ILE MET GLY GLU ARG LEU CYS ARG ILE THR GLN GLU SEQRES 11 A 263 SER LEU TYR LEU ALA LEU ARG MET VAL LYS PRO GLY ILE SEQRES 12 A 263 ASN LEU ARG GLU ILE GLY ALA ALA ILE GLN LYS PHE VAL SEQRES 13 A 263 GLU ALA GLU GLY PHE SER VAL VAL ARG GLU TYR CYS GLY SEQRES 14 A 263 HIS GLY ILE GLY ARG GLY PHE HIS GLU GLU PRO GLN VAL SEQRES 15 A 263 LEU HIS TYR ASP SER ARG GLU THR ASN VAL VAL LEU LYS SEQRES 16 A 263 PRO GLY MET THR PHE THR ILE GLU PRO MET VAL ASN ALA SEQRES 17 A 263 GLY LYS LYS GLU ILE ARG THR MET LYS ASP GLY TRP THR SEQRES 18 A 263 VAL LYS THR LYS ASP ARG SER LEU SER ALA GLN TYR GLU SEQRES 19 A 263 HIS THR ILE VAL VAL THR ASP ASN GLY CYS GLU ILE LEU SEQRES 20 A 263 THR LEU ARG LYS ASP ASP THR ILE PRO ALA ILE ILE SER SEQRES 21 A 263 HIS ASP GLU HET CO A 301 1 HET CO A 302 1 HET NA A 703 1 HET U14 A 701 18 HETNAM CO COBALT (II) ION HETNAM NA SODIUM ION HETNAM U14 3-(5-AMINO-3-IMINO-3H-PYRAZOL-4-YLAZO)-BENZOIC ACID FORMUL 2 CO 2(CO 2+) FORMUL 4 NA NA 1+ FORMUL 5 U14 C10 H8 N6 O2 FORMUL 6 HOH *504(H2 O) HELIX 1 1 THR A 7 GLU A 29 1 23 HELIX 2 2 PRO A 30 VAL A 32 5 3 HELIX 3 3 SER A 37 GLU A 52 1 16 HELIX 4 4 GLY A 61 TYR A 65 5 5 HELIX 5 5 THR A 119 VAL A 140 1 22 HELIX 6 6 ASN A 145 GLU A 160 1 16 SHEET 1 A 3 VAL A 56 SER A 57 0 SHEET 2 A 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 A 3 CYS A 70 ILE A 73 -1 N SER A 72 O ASN A 95 SHEET 1 B 3 VAL A 56 SER A 57 0 SHEET 2 B 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 B 3 PHE A 105 ILE A 114 -1 O THR A 109 N VAL A 98 SHEET 1 C 3 VAL A 76 CYS A 78 0 SHEET 2 C 3 VAL A 223 THR A 225 -1 O VAL A 223 N VAL A 77 SHEET 3 C 3 ILE A 214 THR A 216 -1 N ARG A 215 O LYS A 224 SHEET 1 D 3 SER A 163 VAL A 164 0 SHEET 2 D 3 MET A 206 ASN A 208 -1 O ASN A 208 N SER A 163 SHEET 3 D 3 SER A 231 GLN A 233 -1 O ALA A 232 N VAL A 207 SHEET 1 E 2 GLY A 170 GLY A 172 0 SHEET 2 E 2 GLU A 179 VAL A 183 -1 O VAL A 183 N GLY A 170 SHEET 1 F 4 THR A 200 ILE A 203 0 SHEET 2 F 4 HIS A 236 VAL A 240 -1 O ILE A 238 N PHE A 201 SHEET 3 F 4 GLY A 244 ILE A 247 -1 O GLU A 246 N VAL A 239 SHEET 4 F 4 ILE A 259 SER A 261 -1 O ILE A 260 N CYS A 245 LINK O ASN A 74 NA NA A 703 1555 1555 2.26 LINK O VAL A 76 NA NA A 703 1555 1555 2.25 LINK OD1 ASP A 97 CO CO A 302 1555 1555 2.03 LINK OD2 ASP A 97 CO CO A 302 1555 1555 2.44 LINK OD2 ASP A 108 CO CO A 301 1555 1555 2.15 LINK OD1 ASP A 108 CO CO A 302 1555 1555 1.99 LINK NE2 HIS A 171 CO CO A 301 1555 1555 2.09 LINK OE2AGLU A 204 CO CO A 301 1555 1555 2.06 LINK OE2BGLU A 204 CO CO A 301 1555 1555 2.22 LINK O SER A 231 NA NA A 703 1555 1555 2.26 LINK OE2AGLU A 235 CO CO A 301 1555 1555 2.00 LINK OE2BGLU A 235 CO CO A 301 1555 1555 2.24 LINK OE1AGLU A 235 CO CO A 302 1555 1555 2.05 LINK OE1BGLU A 235 CO CO A 302 1555 1555 2.03 LINK OE2BGLU A 235 CO CO A 302 1555 1555 2.21 LINK CO CO A 301 N2 U14 A 701 1555 1555 2.02 LINK CO CO A 302 N3 U14 A 701 1555 1555 1.98 LINK NA NA A 703 O HOH A 793 1555 1555 2.23 CISPEP 1 GLU A 180 PRO A 181 0 -1.35 SITE 1 AC1 6 ASP A 108 HIS A 171 GLU A 204 GLU A 235 SITE 2 AC1 6 CO A 302 U14 A 701 SITE 1 AC2 6 ASP A 97 THR A 99 ASP A 108 GLU A 235 SITE 2 AC2 6 CO A 301 U14 A 701 SITE 1 AC3 4 ASN A 74 VAL A 76 SER A 231 HOH A 793 SITE 1 AC4 20 CYS A 59 TYR A 62 HIS A 63 TYR A 65 SITE 2 AC4 20 HIS A 79 ASP A 97 ASP A 108 HIS A 171 SITE 3 AC4 20 PHE A 177 HIS A 178 GLU A 204 TRP A 221 SITE 4 AC4 20 GLU A 235 CO A 301 CO A 302 HOH A1017 SITE 5 AC4 20 HOH A1047 HOH A1157 HOH A1183 HOH A1191 CRYST1 39.123 62.945 52.743 90.00 109.01 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025560 0.000000 0.008806 0.00000 SCALE2 0.000000 0.015887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020054 0.00000